ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17k09 |
|---|---|
| Clone Library Name | barley_pub |
>Y1561_METJA (Q58956) Hypothetical protein MJ1561| Length = 553 Score = 32.3 bits (72), Expect = 0.98 Identities = 13/53 (24%), Positives = 31/53 (58%) Frame = -3 Query: 398 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFPDGTIQQQKENL 240 ++GK +SHL PG + V+F++ +D+ A +++++ + + + KE + Sbjct: 76 IKGKATISHLNPGESDTVYFKLHVDENAPSRDYEIDVKVSYDEINKEDGKETI 128
>SPIC_HUMAN (Q8N5J4) Transcription factor Spi-C| Length = 248 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -3 Query: 326 DDPAYGWSTPVNLRLKFP-DGTIQQQKENLQEKPRGKWLQVKVGEVKPHKGQNGEVEISM 150 ++P Y W T +N F +G I Q +N+ E Q+ + KG G ++ + Sbjct: 60 EEPVYNWRTVINSAADFYFEGNIHQSLQNITEN------QLVQPTLLQQKGGKGRKKLRL 113 Query: 149 FEY 141 FEY Sbjct: 114 FEY 116
>Y1506_METJA (Q58901) Hypothetical protein MJ1506| Length = 437 Score = 31.2 bits (69), Expect = 2.2 Identities = 13/51 (25%), Positives = 30/51 (58%) Frame = -3 Query: 398 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFPDGTIQQQKE 246 ++GK +SHL PG + V+F++ +D+ A +++++ + + + KE Sbjct: 117 IKGKATISHLNPGESDTVYFKLHVDENAPSRDYRIDVKVSYDEVDKEDGKE 167
>ZNT1_MOUSE (Q60738) Zinc transporter 1 (ZnT-1) (Solute carrier family 30| member 1) Length = 503 Score = 30.8 bits (68), Expect = 2.9 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -2 Query: 384 GAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPAQVPRRHD 262 GA H+ H G L AR+ G V+AG PP + P + + Sbjct: 143 GAGHGHSHGHGHGHLAKGARKAGRAGVEAGAPPGRAPDQEE 183
>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase| (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 Score = 30.8 bits (68), Expect = 2.9 Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 8/85 (9%) Frame = -2 Query: 504 WPSPGAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEAR 325 W +PG + G P E +NR G AE+ L GP E G R R +G Sbjct: 643 WATPGLE----GAAVPQTLE-KNRAGPEAEKRLRRGPEEDGPWGPWDRRGARSQGKGRRA 697 Query: 324 RPGL--------RVVDAGEPPAQVP 274 RP V AGE P + P Sbjct: 698 RPTSPELESSDDSYVSAGEEPLEAP 722
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 30.8 bits (68), Expect = 2.9 Identities = 23/70 (32%), Positives = 28/70 (40%) Frame = -2 Query: 498 SPGAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRP 319 SP A + GL T ++G D G GG AG PS + H+ G G A P Sbjct: 374 SPPAAGTAAGLPTALLRQGLKTDAGGGA---GGGGAGAGQRPSFSIDHIMGHGGGGAAPP 430 Query: 318 GLRVVDAGEP 289 G G P Sbjct: 431 GAGEGSPGPP 440
>RIMM_MYCTU (P66653) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 30.4 bits (67), Expect = 3.7 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -3 Query: 398 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFP 273 V G++ SH GVT EV E++ DDPA ++ LR K P Sbjct: 4 VVGRVVKSH---GVTGEVVVEIRTDDPADRFAPGTRLRAKGP 42
>RIMM_MYCBO (P66654) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 30.4 bits (67), Expect = 3.7 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -3 Query: 398 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFP 273 V G++ SH GVT EV E++ DDPA ++ LR K P Sbjct: 4 VVGRVVKSH---GVTGEVVVEIRTDDPADRFAPGTRLRAKGP 42
>IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 390 EAGAVPSHARSHLRGLLRGEARRPGLR 310 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>IP3KC_MOUSE (Q7TS72) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 390 EAGAVPSHARSHLRGLLRGEARRPGLR 310 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>ACSA_NITEU (Q82SI5) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 655 Score = 30.4 bits (67), Expect = 3.7 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 550 DERTRHNCFMLFPRGLAITWSEDPKYWTWHPLKEGRPE 437 D T H+ + G ITW + +W WH L G+P+ Sbjct: 215 DTATVHSVIVFRHTGTGITWQPERDHW-WHDLIAGQPD 251
>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)| Length = 288 Score = 30.0 bits (66), Expect = 4.9 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = -2 Query: 561 STGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAG 382 + G R PG + A P+PGA P G G GR +GG A L G ++ G Sbjct: 70 TAGEPRRPGAESRRSPAAAAPAPGAPVPGGGGGGGGGSPGRG-EGGPAALALHGAAKKGG 128
>NUMBL_MOUSE (O08919) Numb-like protein| Length = 604 Score = 29.6 bits (65), Expect = 6.4 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -2 Query: 474 TGLGTP*KKEG--RNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGLRVVD 301 +G G P ++E + + AA +A GP + G V + G +GEA P V Sbjct: 228 SGGGRPAEREAGDKKKAEAAAAPAVAPGPAQPGHVSPTPATTSPGE-KGEAGTP----VA 282 Query: 300 AGEPPAQVPRRHDP 259 AG A +PRRH P Sbjct: 283 AGTTAAAIPRRHAP 296
>CF010_HUMAN (Q5SRN2) Protein C6orf10| Length = 563 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = -3 Query: 350 EVFFEVKLDDPAYGWSTPVNLRLKF-----PDGTIQQQKENLQEKPRGKWLQVKVGEVKP 186 ++ EVK+D A G +LK P G Q K+++ + PRG+ QVK E Sbjct: 287 KIGMEVKVDSDA-GIPKRQETQLKISEMSIPQGQGAQIKKSVSDVPRGQESQVKKSESGV 345 Query: 185 HKGQNGEV 162 KGQ +V Sbjct: 346 PKGQEAQV 353
>NUMBL_HUMAN (Q9Y6R0) Numb-like protein (Numb-R)| Length = 609 Score = 29.6 bits (65), Expect = 6.4 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -2 Query: 474 TGLGTP*KKEG--RNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGLRVVD 301 +G G P ++E + + AA +A GP + G V + G +GEA P V Sbjct: 228 SGGGRPAEREAPDKKKAEAAAAPTVAPGPAQPGHVSPTPATTSPGE-KGEAGTP----VA 282 Query: 300 AGEPPAQVPRRHDP 259 AG A +PRRH P Sbjct: 283 AGTTAAAIPRRHAP 296
>LON_BRECH (P36772) ATP-dependent protease La (EC 3.4.21.53)| Length = 779 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 12/75 (16%) Frame = -3 Query: 338 EVKLDDP------AYGWSTPVNLRLKFPDGTIQQQKENLQEKPRGKWLQ------VKVGE 195 EV +++P + G V LK P+GTI+ E LQ ++LQ V + Sbjct: 56 EVHIEEPDAEQIYSIGTVARVKQMLKLPNGTIRVLVEGLQRAKIEEYLQKEDYFVVSITY 115 Query: 194 VKPHKGQNGEVEISM 150 +K K + EVE M Sbjct: 116 LKEEKAEENEVEALM 130
>ADH4_MOUSE (Q9QYY9) Alcohol dehydrogenase 4 (EC 1.1.1.1) (Alcohol| dehydrogenase class II) (Alcohol dehydrogenase II) (ADH2) Length = 376 Score = 29.3 bits (64), Expect = 8.3 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 73 FGFGCVLLPAIIGCCLSTALRSVS 2 FG GCV L AIIGC ++ A R ++ Sbjct: 202 FGLGCVGLSAIIGCKIAGASRIIA 225
>AF17_HUMAN (P55198) Protein AF-17| Length = 1093 Score = 29.3 bits (64), Expect = 8.3 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 6/77 (7%) Frame = -2 Query: 558 TGWTRGPGTTASCCSLEAWPSPGAKTPSTGL------GTP*KKEGRNRDGGAAERLLAGG 397 TG GT +L A P P +TP TGL + + G R G+ + GG Sbjct: 433 TGSGASAGTHKRMPALSATPVPADETPETGLKEKKHKASKRSRHGPGRPKGSRNKEGTGG 492 Query: 396 PREAGAVPSHARSHLRG 346 P A PS + L G Sbjct: 493 P----AAPSLPSAQLAG 505 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,610,520 Number of Sequences: 219361 Number of extensions: 1696349 Number of successful extensions: 5982 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5530 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5974 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
