ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467671.1| Oryza sativa (japonica cultivar-group), mRNA 232 8e-58
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 232 8e-58
3dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic D... 232 8e-58
4dbj|AK099700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 8e-58
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
6dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
7gb|AC078786.22| Homo sapiens 3 BAC RP11-474F17 (Roswell Park Can... 48 0.024
8gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Can... 48 0.024
9gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswel... 46 0.094
10gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54... 46 0.094
11emb|BX004837.9| Zebrafish DNA sequence from clone CH211-134F7 in... 44 0.37
12emb|CR382336.11| Zebrafish DNA sequence from clone CH211-125A6 i... 44 0.37
13ref|XM_465614.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
14emb|AL590484.10| Human DNA sequence from clone RP11-76E18 on chr... 42 1.5
15emb|AL162390.9| Human DNA sequence from clone RP11-386J22 on chr... 42 1.5
16gb|AE005852.1| Caulobacter crescentus CB15 section 178 of 359 of... 42 1.5
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
19dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20dbj|AK120516.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
21dbj|AK105639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
22dbj|AP001793.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.5
23emb|CT573021.3| Pig DNA sequence from clone XX-BE155F1 on chromo... 42 1.5
24emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 ... 42 1.5
25gb|AC149528.2| Xenopus tropicalis clone ISB-292P1, complete sequ... 40 5.8
26ref|NM_184913.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
27gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.8
28gb|AY658885.1| Synthetic construct Peudomonas aeruginosa clone F... 40 5.8
29ref|XM_610755.2| PREDICTED: Bos taurus hypothetical LOC532244 (L... 40 5.8
30gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.8
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
32gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complet... 40 5.8
33gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complet... 40 5.8
34ref|XM_671871.1| Plasmodium berghei strain ANKA hypothetical pro... 40 5.8
35emb|Z97198.1|HS471M13 Human DNA sequence from clone RP3-471M13 o... 40 5.8
36emb|AL590709.5| Human DNA sequence from clone RP11-441N10 on chr... 40 5.8
37emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chr... 40 5.8
38emb|AL136223.11| Human DNA sequence from clone RP1-242G1 on chro... 40 5.8
39emb|AL132874.30|HSJ329L24 Human DNA sequence from clone RP3-329L... 40 5.8
40gb|AC011848.11| Homo sapiens chromosome 17, clone RP11-354C22, c... 40 5.8
41gb|AC009812.17| Homo sapiens chromosome 8, clone RP11-48B3, comp... 40 5.8
42emb|AJ853840.1| Hordeum vulgare partial mRNA for putative WRKY4 ... 40 5.8
43gb|AC093014.11| Homo sapiens 12 BAC RP11-734E19 (Roswell Park Ca... 40 5.8
44gb|AC148826.4| Pan troglodytes BAC clone CH251-484F13 from chrom... 40 5.8
45dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 5.8
46gb|AC092937.8| Homo sapiens 3q BAC RP11-114F20 (Roswell Park Can... 40 5.8
47gb|AC005831.1| Homo sapiens 12p13.3 PAC RPCI5-1180D12 (Roswell P... 40 5.8
48gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 5.8
49gb|AC148318.3| Pan troglodytes BAC clone CH251-496K6 from chromo... 40 5.8
50dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
51gb|AC097454.2| Homo sapiens BAC clone RP11-2F17 from 4, complete... 40 5.8
52gb|AF328473.1|AF328473 Homo sapiens clone 3qtel_c18t3 sequence 40 5.8
53gb|AE004660.1| Pseudomonas aeruginosa PAO1, section 221 of 529 o... 40 5.8
54gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.8
55gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.8
56emb|AL121981.17|HS1061C18 Human DNA sequence from clone RP5-1061... 40 5.8
57gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genom... 40 5.8
58emb|AL732469.8| Mouse DNA sequence from clone RP23-434B15 on chr... 40 5.8 
>ref|XM_467671.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2168

 Score =  232 bits (117), Expect = 8e-58
 Identities = 171/189 (90%)
 Strand = Plus / Minus

                                                                        
Query: 210  gggcgagcagggagaacttgacgtgcagcgagatcttgcccttgtcgacgtcgagcctgg 269
            |||| ||||| ||||||||||| ||||||  |||||| |||||||||||||| ||||| |
Sbjct: 1934 gggctagcagtgagaacttgacatgcagcatgatcttccccttgtcgacgtccagccttg 1875

                                                                        
Query: 270  cgccggtggcgagccagtatccggggctgtcgtgcgggcccatggtcacctgcgaggtgt 329
            |||||||| |||||||||| |||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 1874 cgccggtgacgagccagtaaccggggctatcctgcggtcccatggtcacctgcgacgtgt 1815

                                                                        
Query: 330  ccacgaacttgagcagcttctgcgcgcccacgggcacgggcgggccgcccgcgaacacgc 389
            |||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct: 1814 ccacgaacttgagcagcttctgcgcgccgacgggcaccggcggcccgccggcgaacacgc 1755

                     
Query: 390  cggagttga 398
            |||||||||
Sbjct: 1754 cggagttga 1746
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  232 bits (117), Expect = 8e-58
 Identities = 171/189 (90%)
 Strand = Plus / Plus

                                                                            
Query: 210      gggcgagcagggagaacttgacgtgcagcgagatcttgcccttgtcgacgtcgagcctgg 269
                |||| ||||| ||||||||||| ||||||  |||||| |||||||||||||| ||||| |
Sbjct: 30755417 gggctagcagtgagaacttgacatgcagcatgatcttccccttgtcgacgtccagccttg 30755476

                                                                            
Query: 270      cgccggtggcgagccagtatccggggctgtcgtgcgggcccatggtcacctgcgaggtgt 329
                |||||||| |||||||||| |||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 30755477 cgccggtgacgagccagtaaccggggctatcctgcggtcccatggtcacctgcgacgtgt 30755536

                                                                            
Query: 330      ccacgaacttgagcagcttctgcgcgcccacgggcacgggcgggccgcccgcgaacacgc 389
                |||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct: 30755537 ccacgaacttgagcagcttctgcgcgccgacgggcaccggcggcccgccggcgaacacgc 30755596

                         
Query: 390      cggagttga 398
                |||||||||
Sbjct: 30755597 cggagttga 30755605



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 362      ggcacgggcgggccgcccgcgaacacgccggagttga 398
                ||||||||||| ||| ||| | |||||||||||||||
Sbjct: 16363582 ggcacgggcggaccgtccgggtacacgccggagttga 16363546
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>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487D09
          Length = 161531

 Score =  232 bits (117), Expect = 8e-58
 Identities = 171/189 (90%)
 Strand = Plus / Plus

                                                                         
Query: 210   gggcgagcagggagaacttgacgtgcagcgagatcttgcccttgtcgacgtcgagcctgg 269
             |||| ||||| ||||||||||| ||||||  |||||| |||||||||||||| ||||| |
Sbjct: 95564 gggctagcagtgagaacttgacatgcagcatgatcttccccttgtcgacgtccagccttg 95623

                                                                         
Query: 270   cgccggtggcgagccagtatccggggctgtcgtgcgggcccatggtcacctgcgaggtgt 329
             |||||||| |||||||||| |||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 95624 cgccggtgacgagccagtaaccggggctatcctgcggtcccatggtcacctgcgacgtgt 95683

                                                                         
Query: 330   ccacgaacttgagcagcttctgcgcgcccacgggcacgggcgggccgcccgcgaacacgc 389
             |||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct: 95684 ccacgaacttgagcagcttctgcgcgccgacgggcaccggcggcccgccggcgaacacgc 95743

                      
Query: 390   cggagttga 398
             |||||||||
Sbjct: 95744 cggagttga 95752
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>dbj|AK099700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C24, full
            insert sequence
          Length = 2167

 Score =  232 bits (117), Expect = 8e-58
 Identities = 171/189 (90%)
 Strand = Plus / Minus

                                                                        
Query: 210  gggcgagcagggagaacttgacgtgcagcgagatcttgcccttgtcgacgtcgagcctgg 269
            |||| ||||| ||||||||||| ||||||  |||||| |||||||||||||| ||||| |
Sbjct: 1934 gggctagcagtgagaacttgacatgcagcatgatcttccccttgtcgacgtccagccttg 1875

                                                                        
Query: 270  cgccggtggcgagccagtatccggggctgtcgtgcgggcccatggtcacctgcgaggtgt 329
            |||||||| |||||||||| |||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 1874 cgccggtgacgagccagtaaccggggctatcctgcggtcccatggtcacctgcgacgtgt 1815

                                                                        
Query: 330  ccacgaacttgagcagcttctgcgcgcccacgggcacgggcgggccgcccgcgaacacgc 389
            |||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct: 1814 ccacgaacttgagcagcttctgcgcgccgacgggcaccggcggcccgccggcgaacacgc 1755

                     
Query: 390  cggagttga 398
            |||||||||
Sbjct: 1754 cggagttga 1746
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  176 bits (89), Expect = 4e-41
 Identities = 158/181 (87%)
 Strand = Plus / Minus

                                                                           
Query: 215     agcagggagaacttgacgtgcagcgagatcttgcccttgtcgacgtcgagcctggcgccg 274
               |||||||||||||||||||||||||||||| | |||||||||||||||||| | || |||
Sbjct: 7851746 agcagggagaacttgacgtgcagcgagatcctccccttgtcgacgtcgagctttgctccg 7851687

                                                                           
Query: 275     gtggcgagccagtatccggggctgtcgtgcgggcccatggtcacctgcgaggtgtccacg 334
               ||| | |||||||| ||||| | ||| ||||| ||||||||||||||||| || ||||||
Sbjct: 7851686 gtgaccagccagtagccgggacagtcctgcggccccatggtcacctgcgacgtctccacg 7851627

                                                                           
Query: 335     aacttgagcagcttctgcgcgcccacgggcacgggcgggccgcccgcgaacacgccggag 394
               ||||||||||||  |||||| ||||| ||| | ||||| || || |||||||||||||||
Sbjct: 7851626 aacttgagcagccgctgcgcccccaccggcgccggcggccctccggcgaacacgccggag 7851567

                
Query: 395     t 395
               |
Sbjct: 7851566 t 7851566
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>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0431E05
          Length = 146091

 Score =  176 bits (89), Expect = 4e-41
 Identities = 158/181 (87%)
 Strand = Plus / Minus

                                                                         
Query: 215   agcagggagaacttgacgtgcagcgagatcttgcccttgtcgacgtcgagcctggcgccg 274
             |||||||||||||||||||||||||||||| | |||||||||||||||||| | || |||
Sbjct: 66128 agcagggagaacttgacgtgcagcgagatcctccccttgtcgacgtcgagctttgctccg 66069

                                                                         
Query: 275   gtggcgagccagtatccggggctgtcgtgcgggcccatggtcacctgcgaggtgtccacg 334
             ||| | |||||||| ||||| | ||| ||||| ||||||||||||||||| || ||||||
Sbjct: 66068 gtgaccagccagtagccgggacagtcctgcggccccatggtcacctgcgacgtctccacg 66009

                                                                         
Query: 335   aacttgagcagcttctgcgcgcccacgggcacgggcgggccgcccgcgaacacgccggag 394
             ||||||||||||  |||||| ||||| ||| | ||||| || || |||||||||||||||
Sbjct: 66008 aacttgagcagccgctgcgcccccaccggcgccggcggccctccggcgaacacgccggag 65949

              
Query: 395   t 395
             |
Sbjct: 65948 t 65948
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>gb|AC078786.22| Homo sapiens 3 BAC RP11-474F17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 87072

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 103   tccaaacaaatccaaaatccaaaa 126
             ||||||||||||||||||||||||
Sbjct: 35662 tccaaacaaatccaaaatccaaaa 35685
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>gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 197893

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 103   tccaaacaaatccaaaatccaaaa 126
             ||||||||||||||||||||||||
Sbjct: 64615 tccaaacaaatccaaaatccaaaa 64592
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>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 172540

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 109   caaatccaaaatccaaaaggagc 131
             |||||||||||||||||||||||
Sbjct: 17818 caaatccaaaatccaaaaggagc 17840
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>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the
            complete sequence
          Length = 271869

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 109  caaatccaaaatccaaaaggagc 131
            |||||||||||||||||||||||
Sbjct: 3465 caaatccaaaatccaaaaggagc 3443
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>emb|BX004837.9| Zebrafish DNA sequence from clone CH211-134F7 in linkage group 19,
              complete sequence
          Length = 188325

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 175    actgtacagactctggaactgt 196
              ||||||||||||||||||||||
Sbjct: 126208 actgtacagactctggaactgt 126229
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>emb|CR382336.11| Zebrafish DNA sequence from clone CH211-125A6 in linkage group 19,
             complete sequence
          Length = 175656

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 175   actgtacagactctggaactgt 196
             ||||||||||||||||||||||
Sbjct: 73474 actgtacagactctggaactgt 73453
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>ref|XM_465614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2555

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 362  ggcacgggcgggccgcccgcgaacacgccggagttga 398
            ||||||||||| ||| ||| | |||||||||||||||
Sbjct: 1866 ggcacgggcggaccgtccgggtacacgccggagttga 1830
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>emb|AL590484.10| Human DNA sequence from clone RP11-76E18 on chromosome 6 Contains the
             5' end of a gene for a novel protein, complete sequence
          Length = 65240

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   aaacaaatccaaaatccaaaa 126
             |||||||||||||||||||||
Sbjct: 24185 aaacaaatccaaaatccaaaa 24205
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>emb|AL162390.9| Human DNA sequence from clone RP11-386J22 on chromosome 9 Contains the
             SMC5L1 gene for SMC5 structural maintenance of chromosomes
             5-like 1 (yeast) (SMC5, KIAA0594), the BTEB1 gene for
             basic transcription element binding protein 1 (BTEB, KLF9)
             and three CpG islands, complete sequence
          Length = 182427

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   aaacaaatccaaaatccaaaa 126
             |||||||||||||||||||||
Sbjct: 36797 aaacaaatccaaaatccaaaa 36777
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>gb|AE005852.1| Caulobacter crescentus CB15 section 178 of 359 of the complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 263  agcctggcgccggtggcgagc 283
            |||||||||||||||||||||
Sbjct: 4542 agcctggcgccggtggcgagc 4562
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 158      catttggcatcaggagaactg 178
                |||||||||||||||||||||
Sbjct: 35877031 catttggcatcaggagaactg 35877051
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>dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419C03
          Length = 146929

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 362   ggcacgggcgggccgcccgcgaacacgccggagttga 398
             ||||||||||| ||| ||| | |||||||||||||||
Sbjct: 49248 ggcacgggcggaccgtccgggtacacgccggagttga 49212
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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506B12
          Length = 170759

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    catttggcatcaggagaactg 178
              |||||||||||||||||||||
Sbjct: 141489 catttggcatcaggagaactg 141509
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>dbj|AK120516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124C02, full
            insert sequence
          Length = 2556

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 362  ggcacgggcgggccgcccgcgaacacgccggagttga 398
            ||||||||||| ||| ||| | |||||||||||||||
Sbjct: 1867 ggcacgggcggaccgtccgggtacacgccggagttga 1831
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>dbj|AK105639.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E04, full
            insert sequence
          Length = 2027

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 362  ggcacgggcgggccgcccgcgaacacgccggagttga 398
            ||||||||||| ||| ||| | |||||||||||||||
Sbjct: 1505 ggcacgggcggaccgtccgggtacacgccggagttga 1469
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>dbj|AP001793.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-661O13, complete
             sequence
          Length = 195743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   aaacaaatccaaaatccaaaa 126
             |||||||||||||||||||||
Sbjct: 43767 aaacaaatccaaaatccaaaa 43747
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>emb|CT573021.3| Pig DNA sequence from clone XX-BE155F1 on chromosome 14, complete
             sequence
          Length = 118416

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 7     gtataatgaatcttttttccttact 31
             |||||||| ||||||||||||||||
Sbjct: 37289 gtataatgtatcttttttccttact 37313
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>emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 in linkage group 9,
             complete sequence
          Length = 150766

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   gggtcagttagcatttggcat 167
             |||||||||||||||||||||
Sbjct: 18945 gggtcagttagcatttggcat 18965
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>gb|AC149528.2| Xenopus tropicalis clone ISB-292P1, complete sequence
          Length = 87806

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gagaactgtacagactctgg 190
             ||||||||||||||||||||
Sbjct: 16405 gagaactgtacagactctgg 16386
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>ref|NM_184913.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 510

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 403 ggccaccaccagcggcggcc 422
           ||||||||||||||||||||
Sbjct: 53  ggccaccaccagcggcggcc 34
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    gcccttgtcgacgtcgagcc 266
              ||||||||||||||||||||
Sbjct: 567748 gcccttgtcgacgtcgagcc 567729
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>gb|AY658885.1| Synthetic construct Peudomonas aeruginosa clone FLH047492.01F
           PA2339 gene, partial cds
          Length = 933

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 ccaccaccagcggcggcccc 424
           ||||||||||||||||||||
Sbjct: 749 ccaccaccagcggcggcccc 768
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>ref|XM_610755.2| PREDICTED: Bos taurus hypothetical LOC532244 (LOC532244), mRNA
          Length = 2913

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 410  accagcggcggcccccgcttctgc 433
            ||||||||| ||||||||||||||
Sbjct: 2015 accagcggcagcccccgcttctgc 1992
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 375     cgcccgcgaacacgccggag 394
               ||||||||||||||||||||
Sbjct: 1348494 cgcccgcgaacacgccggag 1348475
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 403      ggccaccaccagcggcggcc 422
                ||||||||||||||||||||
Sbjct: 31897306 ggccaccaccagcggcggcc 31897325
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>gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complete sequence
          Length = 66610

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   tccaaacaaatccaaaatccaaaa 126
             |||||| |||||||||||||||||
Sbjct: 65729 tccaaagaaatccaaaatccaaaa 65706
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>gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complete sequence
          Length = 130030

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   tccaaacaaatccaaaatccaaaa 126
             |||||| |||||||||||||||||
Sbjct: 58662 tccaaagaaatccaaaatccaaaa 58685
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>ref|XM_671871.1| Plasmodium berghei strain ANKA hypothetical protein (PB000681.00.0)
           partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aaatccaaaatccaaaagga 129
           ||||||||||||||||||||
Sbjct: 796 aaatccaaaatccaaaagga 815
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>emb|Z97198.1|HS471M13 Human DNA sequence from clone RP3-471M13 on chromosome 1q24 Contains a
             small inducible cytokine subfamily E, member 1
             (endothelial monocyte-activating) (SCYE1) pseudogene and a
             novel transcript, complete sequence
          Length = 151514

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   caaatccaaaatccaaaagg 128
             ||||||||||||||||||||
Sbjct: 50226 caaatccaaaatccaaaagg 50245
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>emb|AL590709.5| Human DNA sequence from clone RP11-441N10 on chromosome 6 Contains
            part of the gene for tomosyn (LOC134957) (contains
            FLJ30922), complete sequence
          Length = 38629

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  caaatccaaaatccaaaagg 128
            ||||||||||||||||||||
Sbjct: 5198 caaatccaaaatccaaaagg 5179
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>emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chromosome 13, complete
             sequence
          Length = 104638

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 96    tacaggttccaaacaaatccaaaatcca 123
             ||||||| |||| |||||||||||||||
Sbjct: 69194 tacaggtcccaagcaaatccaaaatcca 69167
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>emb|AL136223.11| Human DNA sequence from clone RP1-242G1 on chromosome 6p21.1-21.2
             Contains the 5' end of the UBR2 gene for ubiquitin protein
             ligase E3 component n-recognin 2, complete sequence
          Length = 103875

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   tccaaacaaatccaaaatccaaaa 126
             |||||| |||||||||||||||||
Sbjct: 61026 tccaaaaaaatccaaaatccaaaa 61003
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>emb|AL132874.30|HSJ329L24 Human DNA sequence from clone RP3-329L24 on chromosome 6q22.1-22.33
             Contains three novel genes (FLJ20170, FLJ22085), the 3'
             end of a novel gene containing FLJ13942 and a CpG island,
             complete sequence
          Length = 112638

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   tccaaacaaatccaaaatccaaaa 126
             |||||| |||||||||||||||||
Sbjct: 14971 tccaaaaaaatccaaaatccaaaa 14994
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>gb|AC011848.11| Homo sapiens chromosome 17, clone RP11-354C22, complete sequence
          Length = 163577

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 96    tacaggttccaaacaaatccaaaatcca 123
             ||||||||||| |||| |||||||||||
Sbjct: 18734 tacaggttccacacaagtccaaaatcca 18707
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>gb|AC009812.17| Homo sapiens chromosome 8, clone RP11-48B3, complete sequence
          Length = 155405

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    caaatccaaaatccaaaagg 128
              ||||||||||||||||||||
Sbjct: 105027 caaatccaaaatccaaaagg 105046
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>emb|AJ853840.1| Hordeum vulgare partial mRNA for putative WRKY4 protein
          Length = 701

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 402 tggccaccaccagcggcggc 421
           ||||||||||||||||||||
Sbjct: 179 tggccaccaccagcggcggc 198
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>gb|AC093014.11| Homo sapiens 12 BAC RP11-734E19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 97495

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   tccaaacaaatccaaaatccaaaa 126
             |||||| |||||||||||||||||
Sbjct: 39397 tccaaaaaaatccaaaatccaaaa 39420
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>gb|AC148826.4| Pan troglodytes BAC clone CH251-484F13 from chromosome 7, complete
              sequence
          Length = 184163

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    tccaaacaaatccaaaatccaaaa 126
              |||||| |||||||||||||||||
Sbjct: 151006 tccaaagaaatccaaaatccaaaa 151029
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 93      atttacaggttccaaacaaa 112
               ||||||||||||||||||||
Sbjct: 1518893 atttacaggttccaaacaaa 1518874
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>gb|AC092937.8| Homo sapiens 3q BAC RP11-114F20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188709

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    tccaaacaaatccaaaatccaaaa 126
              |||||| |||||||||||||||||
Sbjct: 136612 tccaaataaatccaaaatccaaaa 136635
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>gb|AC005831.1| Homo sapiens 12p13.3 PAC RPCI5-1180D12 (Roswell Park Cancer Institute
              Human PAC Library) complete sequence
          Length = 144515

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    tccaaacaaatccaaaatccaaaa 126
              |||||| |||||||||||||||||
Sbjct: 131341 tccaaaaaaatccaaaatccaaaa 131364
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     cgtgcgggcccatggtcacc 319
               ||||||||||||||||||||
Sbjct: 2866898 cgtgcgggcccatggtcacc 2866879
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>gb|AC148318.3| Pan troglodytes BAC clone CH251-496K6 from chromosome 7, complete
              sequence
          Length = 194952

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    tccaaacaaatccaaaatccaaaa 126
              |||||| |||||||||||||||||
Sbjct: 126387 tccaaagaaatccaaaatccaaaa 126410
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 403      ggccaccaccagcggcggcc 422
                ||||||||||||||||||||
Sbjct: 31987822 ggccaccaccagcggcggcc 31987841
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>gb|AC097454.2| Homo sapiens BAC clone RP11-2F17 from 4, complete sequence
          Length = 163486

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ataatgaatcttttttcctt 28
             ||||||||||||||||||||
Sbjct: 92802 ataatgaatcttttttcctt 92821
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>gb|AF328473.1|AF328473 Homo sapiens clone 3qtel_c18t3 sequence
          Length = 289

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 103 tccaaacaaatccaaaatccaaaa 126
           |||||| |||||||||||||||||
Sbjct: 179 tccaaataaatccaaaatccaaaa 156
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>gb|AE004660.1| Pseudomonas aeruginosa PAO1, section 221 of 529 of the complete
            genome
          Length = 10977

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  ccaccaccagcggcggcccc 424
            ||||||||||||||||||||
Sbjct: 3304 ccaccaccagcggcggcccc 3323
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     gcgccggtggcgagccagta 288
               ||||||||||||||||||||
Sbjct: 1310515 gcgccggtggcgagccagta 1310534
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 399     tgctggccaccaccagcggc 418
               ||||||||||||||||||||
Sbjct: 2539325 tgctggccaccaccagcggc 2539306
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>emb|AL121981.17|HS1061C18 Human DNA sequence from clone RP5-1061C18 on chromosome 3p36.22-36.33
              Contains the 5' part of the DLG1 gene encoding the discs
              protein (large Drosophila homolog 1, presynaptic protein
              SAP97) and a CpG island, complete sequence
          Length = 148493

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 103    tccaaacaaatccaaaatccaaaa 126
              |||||| |||||||||||||||||
Sbjct: 113036 tccaaataaatccaaaatccaaaa 113013
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>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete
             sequence
          Length = 150663

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   ggccaccaccagcggcggcc 422
             ||||||||||||||||||||
Sbjct: 98559 ggccaccaccagcggcggcc 98578
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>emb|AL732469.8| Mouse DNA sequence from clone RP23-434B15 on chromosome X, complete
              sequence
          Length = 197111

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 392    gagttgatgctggccaccac 411
              ||||||||||||||||||||
Sbjct: 193290 gagttgatgctggccaccac 193271


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,588,858
Number of Sequences: 3902068
Number of extensions: 3588858
Number of successful extensions: 77883
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77200
Number of HSP's gapped (non-prelim): 683
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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