Clone Information

BLAST Search Result

Clone Name	rbaal17j20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H...	33	0.32
2	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	33	0.42
3	TLE2_MOUSE (Q9WVB2) Transducin-like enhancer protein 2	32	0.71
4	HXB3_MOUSE (P09026) Homeobox protein Hox-B3 (Hox-2.7) (MH-23)	32	0.71
5	CG1_HUMAN (Q13495) CG1 protein (F18)	32	0.71
6	BSN_MOUSE (O88737) Bassoon protein	32	0.93
7	HXB1_MOUSE (P17919) Homeobox protein Hox-B1 (Hox-2.9)	32	0.93
8	FX4L1_HUMAN (Q9NU39) Forkhead box protein D4-like 1	32	0.93
9	TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)	32	1.2
10	NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytopl...	32	1.2
11	BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc...	31	1.6
12	CIC_MOUSE (Q924A2) Protein capicua homolog	31	1.6
13	YNL6_YEAST (P53924) RING finger protein YNL116W	31	2.1
14	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	31	2.1
15	STE5_YEAST (P32917) Protein STE5	31	2.1
16	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	30	2.7
17	RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-...	30	2.7
18	A4_DROME (P14599) Beta-amyloid-like protein precursor	30	3.5
19	MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domai...	30	3.5
20	VP40_EBV (P03234) Capsid protein P40 (Virion structural protein ...	30	3.5
21	FA38A_HUMAN (Q92508) Protein FAM38A	30	3.5
22	Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 in...	30	3.5
23	PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33	30	3.5
24	CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)	30	4.6
25	WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.1...	30	4.6
26	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	30	4.6
27	PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing pr...	30	4.6
28	VID21_ASPFU (Q4WP03) Chromatin modification-related protein vid21	30	4.6
29	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	30	4.6
30	GUN6_DICDI (P22699) Endoglucanase precursor (EC 3.2.1.4) (Endo-1...	30	4.6
31	YM2A_CAEEL (P34447) Hypothetical protein F54F2.2, isoform a	30	4.6
32	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	30	4.6
33	INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase...	29	6.0
34	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	29	6.0
35	NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cata...	29	6.0
36	BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)	29	6.0
37	SURE_DECAR (Q47D24) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid...	29	6.0
38	PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101	29	6.0
39	GCDC_ACIFE (Q9ZAA7) Glutaconyl-CoA decarboxylase gamma subunit (...	29	6.0
40	PDC6I_XENLA (Q9W6C5) Programmed cell death 6-interacting protein...	29	6.0
41	BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 ...	29	6.0
42	GLTB_PORPU (P51375) Ferredoxin-dependent glutamate synthase (EC ...	29	7.8
43	IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 s...	29	7.8
44	SHAN3_RAT (Q9JLU4) SH3 and multiple ankyrin repeat domains 3 (Sh...	29	7.8
45	CIKS_HUMAN (O43734) Adapter protein CIKS (Connection to IKK and ...	29	7.8
46	DNAA_SYNY3 (P49995) Chromosomal replication initiator protein dnaA	29	7.8
47	LIN39_CAEEL (P34684) Homeobox protein lin-39 (Abnormal cell line...	29	7.8
48	BRO1_USTMA (Q4PHA8) Vacuolar protein-sorting protein BRO1 (BRO d...	29	7.8
49	C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor...	29	7.8

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 419 PAPIS-VPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           PAP S  P +PAP S      +PPS G  S +  SP +   P+ A PS +  S  P
Sbjct: 43  PAPPSPAPPSPAPPSPAPPSPAPPSPGPPSPAPPSPPSPAPPSPAPPSPAPPSPAP 98



 Score = 32.3 bits (72), Expect = 0.71
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 419 PAPIS-VPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           PAP S  P +PAP S G    +PPS  + +  S +P +   P+ A PS +  S  P
Sbjct: 53  PAPPSPAPPSPAPPSPGPPSPAPPSPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAP 108



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 419 PAPIS-VPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           PAP S  P +PAP S       PPS    S  S +P +   P+ A PS +  S  P
Sbjct: 48  PAPPSPAPPSPAPPSPAPPSPGPPSPAPPSPPSPAPPSPAPPSPAPPSPAPPSPAP 103



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 419 PAPIS-VPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPS 279
           PAP S  P +PAP S      +PPS    S  S +P +   PA  +PS
Sbjct: 91  PAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPPSPAPPSPSPPAPPSPS 138



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 419 PAPIS-VPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNS 273
           PAP S  P +PAP S      +PPS    S +  SP     P+ A PS S
Sbjct: 81  PAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPPSPAPPSPS 130



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 419 PAPISVPLAPAPISV-GMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           PAP  VP +PAP S    A  SPPS    S S  +P +   P+ A PS +  S  P
Sbjct: 207 PAP-PVPPSPAPPSPPSPAPPSPPSPAPPSPSPPAPPSPVPPSPAPPSPAPPSPKP 261



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 419 PAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATP 282
           PAP S P  P+P     A  SPPS    S S  +P +   P+ A P
Sbjct: 101 PAPPS-PAPPSPAPPSPAPPSPPSPAPPSPSPPAPPSPSPPSPAPP 145



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -1

Query: 413 PISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           P   P +PAP S      +PPS    S    SP     P+ A PS +  S  P
Sbjct: 41  PSPAPPSPAPPSPAPPSPAPPSPAPPSPGPPSPAPPSPPSPAPPSPAPPSPAP 93

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPA----PISVGMAQNSPPSRG-------TLSESSGSPMNQGVPAAAT 285
           P  +P+P SVP  PA    P++ G  + S P  G       T   +S SP  Q  P  AT
Sbjct: 505 PQRLPSPTSVPQQPASQATPMTQGQGRQSRPVAGGPGAPPATRPPASPSPQRQAGPPQAT 564

Query: 284 PSNSGLSSMPWK*GSLP 234
              S     P K   +P
Sbjct: 565 RQTSVSGQAPPKASGVP 581

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>TLE2_MOUSE (Q9WVB2) Transducin-like enhancer protein 2|
          Length = 767

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAA------ATPSNSG 270
           PS  P+P++ P   AP+ +   ++   S  +L+ S GSP+ +    A       TP++  
Sbjct: 269 PSEPPSPVTTPCGKAPLCIPARRDLTDSPASLASSLGSPLPRSKDIALNDLPTGTPASRS 328

Query: 269 LSSMPWK*GSLP 234
             + P +  S P
Sbjct: 329 CGTSPPQDSSTP 340

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>HXB3_MOUSE (P09026) Homeobox protein Hox-B3 (Hox-2.7) (MH-23)|
          Length = 433

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = -1

Query: 437 MTPSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSS- 261
           M P   P P+  P    P S      +P S  + S + G P   G P     SNS L+  
Sbjct: 74  MRPGLAPEPLPAPPGSPPPSA-----APTSTTSNSNNGGGPSKSGPPKCGAGSNSTLTKQ 128

Query: 260 -MPW 252
             PW
Sbjct: 129 IFPW 132

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>CG1_HUMAN (Q13495) CG1 protein (F18)|
          Length = 701

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESS--GSPMNQGVPAAATPSNSGLS-S 261
           PS  P P+ +P  P P S      S  S  TLS S+  GSP N  + +  + SN+ L  +
Sbjct: 271 PSLQPPPLPLPPPPPPFSPQSLMVSCMSSNTLSGSTLRGSP-NALLSSMTSSSNAALGPA 329

Query: 260 MPWK*GSLPAACHRQ*P 210
           MP+    LP+    Q P
Sbjct: 330 MPYAPEKLPSPALTQQP 346

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>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 419  PAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
            PA  +VP  P+  +       PP+    +  S  P   G PA   P+ +G S+ P
Sbjct: 3044 PASAAVPATPSGPTAFQQPRFPPAAPQYTAGSSGPTQNGFPAHQAPTYTGPSTYP 3098

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>HXB1_MOUSE (P17919) Homeobox protein Hox-B1 (Hox-2.9)|
          Length = 297

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLS-SMP 255
           PS   AP S P   AP     A  S    G    SS    N G P    PS+ G+S   P
Sbjct: 19  PSAYSAPTSFPPCSAPAVDSYAGESRYGGGL--PSSALQQNSGYPVQQPPSSLGVSFPSP 76

Query: 254 WK*GSLPAACH 222
              G  PAAC+
Sbjct: 77  APSGYAPAACN 87

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>FX4L1_HUMAN (Q9NU39) Forkhead box protein D4-like 1|
          Length = 408

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 23/61 (37%), Positives = 27/61 (44%)
 Frame = -1

Query: 434 TPSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           TP  +P  +   L P P   G    SPP  G +S S  S M QGV  A T +   LS   
Sbjct: 291 TPGTLPV-LQPSLGPQPWEEGKGLASPPGGGCISFSIESIM-QGVRGAGTGAAQSLSPTA 348

Query: 254 W 252
           W
Sbjct: 349 W 349

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>TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)|
          Length = 743

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVP------AAATPSNSG 270
           PS  P+P + P    PI +   ++   S  +L+ S GSP+ +          A+TP++  
Sbjct: 244 PSEPPSPATTPCGKVPICIPARRDLVDSPASLASSLGSPLPRAKELILNDLPASTPASKS 303

Query: 269 LSSMPWK*GSLP 234
             S P +  S P
Sbjct: 304 CDSSPPQDASTP 315

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>NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 717

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 419 PAPISVPLAPAPISVGMAQN---SPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMPWK 249
           P P   PL P     G  +    +PPS GT+  +     +       +PS +    +P  
Sbjct: 7   PVPSKFPLGPPAAVCGSGETLRPAPPSGGTMKAAEEEHYSY-----VSPSVTSTLPLPTA 61

Query: 248 *GSLPAACH 222
             +LPAACH
Sbjct: 62  HSALPAACH 70

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>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2160

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMPW 252
           P  VP  +  PLAP+P S    +  P        +  +P   GV AA T  + G S+   
Sbjct: 521 PPAVPKELPAPLAPSPASAPTPEKEPEESAQAPPAQCTP-TPGVAAAPTLVSGGGSTSST 579

Query: 251 K*GSLPAA 228
             GS  A+
Sbjct: 580 SSGSFEAS 587

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>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMPW 252
           P  V  P+   +  AP +V       P  G  +  +   + QG P +ATP+ SG S+   
Sbjct: 740 PHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPASPAVQFIAQGAPGSATPAGSGASTGSG 799

Query: 251 K*GSLP 234
             G +P
Sbjct: 800 PNGPVP 805

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>YNL6_YEAST (P53924) RING finger protein YNL116W|
          Length = 522

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -1

Query: 425 FVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSG-SPMNQGVPAAATPSN------SGL 267
           + P P + P   AP S   + +S  S    + SSG +P N+   A+ TPSN      SG+
Sbjct: 2   YTPIPANTPAPTAPTSSMTSNSSSASNANTTSSSGINPRNR---ASGTPSNERARPASGI 58

Query: 266 SS 261
           SS
Sbjct: 59  SS 60

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>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -1

Query: 401  PLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
            P  P P +    QNS  SR T   + G+P N G P   TP NS + + P
Sbjct: 1114 PAGPTPATAANPQNSTASRRT-PNNPGNPSNPGPP--KTPENSLIVTNP 1159

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>STE5_YEAST (P32917) Protein STE5|
          Length = 917

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 395 APAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMPWK*GSLP 234
           +P+PIS      SP SR T S SSG+     +   +T S   L   P +  SLP
Sbjct: 69  SPSPISSSTFSFSPKSRVTSSNSSGNEDGNLMNTPSTVSTDYLPQHPHRTSSLP 122

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
 Frame = -1

Query: 434 TPSFV-------PAPISVPLAPAPISVGMA-QNSPPSRGTLSESSGSPMNQGVPAAATP 282
           TP FV       PA  S P APAP +   A    PP+  TL+   G P      A A P
Sbjct: 240 TPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 298

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>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)|
           (AtRAD23-3)
          Length = 419

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 419 PAPISVPLAPAPISVGMAQNSP-PSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           PA +S P+APAP        +P P+    +E+  +P+ + VPA  + S     S P
Sbjct: 111 PASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAP 166

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>A4_DROME (P14599) Beta-amyloid-like protein precursor|
          Length = 887

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
 Frame = -1

Query: 416 APISVPLAPAPISVGMAQNSPPSRGTLSESSGSPM-----NQGVPAAATPSNSGLSSMPW 252
           +P S P+APAP    +   S  S   LS S+ + +     N G  A A PS +  +S P+
Sbjct: 340 SPSSAPVAPAPEKAPVKSESVTSTPQLSASAAAFVAANSGNSGTGAGAPPSTAQPTSDPY 399

Query: 251 K*GSLPAACHRQ*PA*RRTLKEKKNKT*TR 162
                P   H+     ++ L+E   +  TR
Sbjct: 400 FTHFDPHYEHQSYKVSQKRLEESHREKVTR 429

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>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor|
           (EGF-like domain-containing protein 5) (Multiple
           EGF-like domain protein 5)
          Length = 600

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -1

Query: 434 TPS---FVPAPISVPLAPAPISVGMAQNSPPSRG--TLSESSGSPMNQGVPAAATPSNSG 270
           TPS     P   S P  PAP ++      PP+    T +++S +P   G P A +P  S 
Sbjct: 122 TPSEDGHTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQASSTP---GTPTAESPDRSS 178

Query: 269 LSS 261
            SS
Sbjct: 179 NSS 181

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>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)|
           (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 605

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSG 270
           P +VP P      P P S   AQ  PP  GT +  +       +P A    NSG
Sbjct: 496 PRYVPHP-----PPPPTSHQAAQAQPPPPGTQAPEAHCVAESTIPEAGAAGNSG 544

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>FA38A_HUMAN (Q92508) Protein FAM38A|
          Length = 2035

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 422  VPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQG 303
            +P P   P AP+ +S G+    P S  ++++  GSP++ G
Sbjct: 1091 LPGPTEAPNAPSTVSSGLGAEEPLS--SMTDDMGSPLSTG 1128

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>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic|
           region
          Length = 224

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPS 279
           P  VP P S P+ P P        +PP   T S  S +P    +P   TP+
Sbjct: 37  PPIVPPPTSPPIVPLP--------TPPPTPTPSPPSPTPPPTPIPPTPTPT 79

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>PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33|
          Length = 498

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +1

Query: 274 LLLGVAAAGTPWFIGLPEDSLSVPLDGGLFWAIPTLIGAGASGTEI-----GAGTKLGVI 438
           LL G   AG    +           DGGLF+ +    GAG +GT +     GAG   G++
Sbjct: 224 LLFGAGGAGGVGGLAADAGDGGAGGDGGLFFGVGGAGGAGGTGTNVTGGAGGAGGNGGLL 283

Query: 439 F 441
           F
Sbjct: 284 F 284

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>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)|
          Length = 1430

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 428  SFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPS 279
            S  P+P+  P    P ++    +SPPS+   S S   P + G PA   P+
Sbjct: 1295 SATPSPVPSPARQPPAALIKPASSPPSQ---SASPAKPPSPGAPALQVPT 1341

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>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1222

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -1

Query: 437  MTPSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSM 258
            ++P    +P + P+ P PI    + +  P     S+ S +P  Q  P++  PS+SG S +
Sbjct: 803  LSPGTPFSPGTPPVFPCPIFPITSPSCHPY--PFSQVSSNPCPQA-PSSLLPSSSGASQV 859

Query: 257  PWK*GSLPAA 228
            P+   SLP +
Sbjct: 860  PFPSPSLPTS 869

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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 419  PAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSS 261
            P   S+P A +P S  + ++ PP  G  SE +  P+   +  A + S+SG SS
Sbjct: 1128 PQKGSIPSASSPTSPALPRSEPPPAGP-SEKNSIPIPTIIIKAPSTSSSGRSS 1179

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>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1687

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 25/79 (31%), Positives = 33/79 (41%)
 Frame = -1

Query: 419 PAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMPWK*GS 240
           P P +   AP P + G A +    RG L  +  +       AAA  S+S  SS     G 
Sbjct: 79  PQPAAGGAAPVPAAGGGANSLLLKRGRLKRNLSA-------AAAASSSSSPSSASSAAGG 131

Query: 239 LPAACHRQ*PA*RRTLKEK 183
           LPA+C        R+L  K
Sbjct: 132 LPASCSASASLCTRSLDRK 150

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>VID21_ASPFU (Q4WP03) Chromatin modification-related protein vid21|
          Length = 1467

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
 Frame = -1

Query: 434  TPSFVPAPISVPLAPAPISVGMAQNSPPSRGT-----LSESSGSPMNQGVPAAATPSNSG 270
            TP+ +P     P  P     GM    P +        +  S G P  QGVPA   P N  
Sbjct: 1110 TPNGIPHNPGTPGIPGATPNGMHNGMPNALPNGIPPGMGVSQGRPHMQGVPAGGPPMNGP 1169

Query: 269  LSSMPWK*GSLPAACHRQ*PA*RRTLKEKKNKT*TRCHR 153
            +   P     +P     Q P  R  +  + +   TR  R
Sbjct: 1170 IPPNPMAMKMMPQTGMPQGPGGRPGMPMQTSPDNTRVMR 1208

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNS 273
           P  +P+P S P  PA      +Q +PP++G   +S       G P AA P  S
Sbjct: 505 PQRLPSPTSAPQQPA------SQAAPPTQGQGRQSRPVAGGPGAPPAARPPAS 551

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>GUN6_DICDI (P22699) Endoglucanase precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Spore germination protein
           270-6) (Cellulase)
          Length = 705

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = -1

Query: 107 NCLMLSSWIVVSPDVVNRESDYCRVLSSSL 18
           NC++L  + ++S  ++N ++DYC +L ++L
Sbjct: 6   NCILLIIFGLLSTQLINADTDYCSLLENAL 35

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>YM2A_CAEEL (P34447) Hypothetical protein F54F2.2, isoform a|
          Length = 867

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 434 TPSFVPAPISVPLAPAPISVGMAQNS-PPSRGTLSESSGSPMNQGVPAAATPSNSGLSS 261
           TPS +P  + +  A   ++   A +S  P    +     +P   G P AATP  + ++S
Sbjct: 729 TPSNIPLTVPLSTAATALTTTTAASSGAPVNSNIQNHRATPSTAGAPMAATPIMTAVTS 787

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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/60 (33%), Positives = 22/60 (36%)
 Frame = -1

Query: 437 MTPSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSM 258
           M P   P P   P  P P S GM    PP       + G P   G+P    PS  G   M
Sbjct: 273 MPPPMPPTPGMTPRPPPPPSSGMWPPPPPP--PPGRTPGPPGMPGMPPPPPPSRFGPPGM 330

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>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)|
           (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase)
           (Phosphatidylinositol polyphosphate 5-phosphatase type
           IV)
          Length = 644

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 365 QNSPPSRGTLSESSGSPMNQGVPAAATPSNS 273
           Q  P SRG LS   GSP + G P +   S+S
Sbjct: 138 QEIPKSRGVLSSERGSPSSGGNPLSGVASSS 168

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           P  VP+ +S P AP PI        PPS GT+S    SP     P +  P+ +  S  P
Sbjct: 242 PERVPS-LSAP-APPPIP-------PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPP 291

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>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and|
           dental anomalies protein)
          Length = 1630

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 422 VPAPISVPLAPAPISVGMAQNSPP--SRGTLSESSGSPMNQGVPAAATPSNSGLSS 261
           VPAP  +P  P P+     Q  PP        E S + + +  PAA   S++  ++
Sbjct: 61  VPAPSGLPPPPPPLPAPADQTQPPHGEASVAGEESTAGIPEAAPAAGEASSAAAAA 116

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>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = -1

Query: 419  PAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
            PA  + P  P+  +        P     S  SG P   G PA   P+  G S+ P
Sbjct: 3035 PATAAAPATPSGPTAFQQPRFQPPAPQYSAGSGGPTQNGFPAHQAPTYPGPSTYP 3089

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>SURE_DECAR (Q47D24) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 246

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +1

Query: 262 LDRPLLLGVAAAGTPWFIGLPEDSLSVPLDGGLFWAIPTLIGAGASGTEIGA 417
           LDRPLLL  AA G  +  G P D + + +  G+   +P +I    SG  +GA
Sbjct: 47  LDRPLLLKKAATGFYFVNGTPTDCVHLAVT-GMLDKLPDII---VSGINLGA 94

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>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 434 TPSFVPAPISVPL-APAPISVGMAQNSPPSRGTLSESSGSPMNQGVPA-AATPSNSGLSS 261
           TP+  PA  + P  APA  + G A N+     + S SS S  N   PA + TP+ +  SS
Sbjct: 27  TPTPAPATAATPTTAPAASANGTAANAMKPEAS-SNSSNSASNGTTPAPSTTPTTASNSS 85

Query: 260 MP 255
            P
Sbjct: 86  AP 87

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>GCDC_ACIFE (Q9ZAA7) Glutaconyl-CoA decarboxylase gamma subunit (EC 4.1.1.70)|
           (Biotin carrier)
          Length = 145

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 416 APISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           AP +   APA   V  A  + P+    +  + +P     PAAA P+ S   S P
Sbjct: 30  APAAPAAAPAAAPVAAAPAAAPAPAPAAAPAAAPAPAAKPAAAAPAGSVTVSAP 83

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>PDC6I_XENLA (Q9W6C5) Programmed cell death 6-interacting protein (Signal|
           transduction protein Xp95)
          Length = 867

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
 Frame = -1

Query: 419 PAPISVPLA-PAPISVGMAQNSPPSRGTLSESSGSPMN------QGVPAAATPSNSGLSS 261
           P P ++P A P P S   A N  P+    ++SS  P N      QG P  + P   G   
Sbjct: 761 PPPPAMPSASPVPASAAQASNPAPT--AAADSSQPPSNTIPSQAQGPPYPSYPGYPGYYG 818

Query: 260 MPWK*GSLP 234
           MP   G  P
Sbjct: 819 MPMPVGYNP 827

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>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 (BBC1 protein)|
          Length = 1157

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           P  VP+  S P  P+  SV  A   PP+   LS  S  P+    P ++ P      S+P
Sbjct: 691 PHPVPSAPSAPPVPSAPSVPSAPPVPPAPPALSAPSVPPVPPVPPVSSAPPALSAPSIP 749

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>GLTB_PORPU (P51375) Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)|
            (Fd-GOGAT)
          Length = 1538

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
 Frame = +1

Query: 277  LLGVAAAGTPWFIGLPE-----------DSLSVPLDGGLFWAIPTLIGAGASGTEIGAGT 423
            L  +  AG+PW +GL E           D +++ +DGGL      ++ A     E G GT
Sbjct: 1095 LSSIKHAGSPWELGLSEVHQLLAENQLRDRVTLRVDGGLRTGSDIVLAAIMGAEEFGFGT 1154

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>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 434 TPSF-VPAPISVPLA-PAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSG 270
           TPS   P P + P A PAP+S   A  +P + G    S+ +P     P+   P+  G
Sbjct: 32  TPSTPAPTPAATPAASPAPVSSDPAVAAPAAPGQTPASAPAPAQTPAPSQPGPALPG 88

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>SHAN3_RAT (Q9JLU4) SH3 and multiple ankyrin repeat domains 3 (Shank3)|
           (Proline-rich synapse associated protein 2) (ProSAP2)
           (SPANK-2)
          Length = 1815

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSSMP 255
           P+  P P+S  LAPAP   G    S    GTL+   G P  +   +   P ++G S  P
Sbjct: 14  PAEPPEPLSPALAPAPAPPGPLPRSAVG-GTLAGGQGGP-GRRAESPCAPLSAGNSQGP 70

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>CIKS_HUMAN (O43734) Adapter protein CIKS (Connection to IKK and SAPK/JNK)|
           (TRAF3-interacting protein 2) (Nuclear factor NF-kappa-B
           activator 1) (ACT1)
          Length = 574

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 404 VPLAPAPISVGMAQNSPPSRGTLSESS 324
           VP  P+P +V    ++PP+RGTL  S+
Sbjct: 378 VPQPPSPAAVPRPPSNPPARGTLKTSN 404

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>DNAA_SYNY3 (P49995) Chromosomal replication initiator protein dnaA|
          Length = 447

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = +1

Query: 46  SDSRFTTSGLTTIHDDNIKQFNA*INSLD----QEITLRQR*HLVQVLFFFSLRVLRQAG 213
           S  RFT   +T I  DN++ F +   S D     +I   +     Q  FF +   L +AG
Sbjct: 177 STERFTNDLITAIRQDNMEDFRSYYRSADFLLIDDIQFIKGKEYTQEEFFHTFNSLHEAG 236

Query: 214 H*RWHAAGREP-HFQGMLDR 270
                A+ R P    G+ DR
Sbjct: 237 KQVVVASDRAPQRIPGLQDR 256

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>LIN39_CAEEL (P34684) Homeobox protein lin-39 (Abnormal cell lineage protein 39)|
          Length = 253

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = -1

Query: 437 MTPSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPSNSGLSS 261
           MT S  P+    P A AP S         S  + S SS S     V A+  PS+S LSS
Sbjct: 1   MTTSTSPSSTDAPRATAPES---------SSSSSSSSSSSSSTSSVGASGIPSSSELSS 50

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>BRO1_USTMA (Q4PHA8) Vacuolar protein-sorting protein BRO1 (BRO domain-containing|
            protein 1)
          Length = 1076

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -1

Query: 419  PAPISVPLAPAPISVGMAQNS---PPSRGTLSESSGSPMNQGVPAAATPSNSGLSSM 258
            P P+S    PA +  G+ Q S   PP    L     S   Q  PAAA P++   SSM
Sbjct: 835  PGPLSPGPPPAALP-GVRQTSNSGPPPPPPLPHQQASYQQQPPPAAAAPAHDPYSSM 890

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>C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor (Complement|
           component 1, q subcomponent, receptor 1) (C1qR) (C1qRp)
           (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (CDw93)
          Length = 652

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = -1

Query: 431 PSFVPAPISVPLAPAPISVGMAQNSPPSRGTLSESSGSPMNQGVPAAATPS 279
           P +V AP  V     P+S+G     PPS     E  G      VP AAT S
Sbjct: 456 PGWVLAPNGVSCTMGPVSLG-----PPSGPPDEEDKGEKEGSTVPRAATAS 501


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,028,864
Number of Sequences: 219361
Number of extensions: 1039371
Number of successful extensions: 3966
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 3577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3940
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result