>DRI_DROME (Q24573) Protein dead ringer (Protein retained)|
          Length = 911

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   YDTSNPLQLQGHKHIQQRHL*QLNKKGVWNQP 99
           +D S P Q+ GH H Q  HL + +   + N P
Sbjct: 695 HDDSEPQQMNGHHHHQTHHLDKSDDSAIENSP 726

>UVRA_CLOPE (Q8XNI5) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 939

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 316 DVMILVSIVQPLLEEINAILV-KHQLDMLKC 227
           DV  LV I+Q L++  N ++V +H LDM+KC
Sbjct: 866 DVNRLVKILQRLVDGGNTVIVIEHNLDMIKC 896

>TRMU_LACAC (Q5FKU0) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 375

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 311 HDIGLHCTASARGDQCHFG*TPAGHA 234
           HD  +HCTA  R  QC  G T   HA
Sbjct: 301 HDFEMHCTAKFRYRQCDIGVTVKYHA 326

>GLUD1_MOUSE (Q8CIX8) Glutamate--ammonia ligase domain-containing protein 1|
           (Lengsin) (Lens glutamine synthase-like)
          Length = 563

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 14  PTHYNYKGTNTYSKDISDSLTKRESGTNHQQFLKETPTNLHFTMQARLI 160
           PT YN +  N           K+E   NH QF++   T+LH   +++ I
Sbjct: 110 PTRYNAQSFNPPQLSARMKHIKQEMAKNHLQFVRFEATDLHGVSRSKSI 158

>VGLH_MEHV1 (P36337) Glycoprotein H precursor|
          Length = 808

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
 Frame = +2

Query: 89  GTNHQQFLKETPTNLHFTMQARLIS-----LCSTVVDMYNHQVIGHPCVSGAFEHVQLVF 253
           G +   F K+  T  HF +    I      L  +++      + GH     A +H+ L+ 
Sbjct: 363 GISSAAFRKDAST--HFLISGTPIKDSKADLIKSLLSKVIRPISGHTRPLSAIQHLFLLR 420

Query: 254 NQNGIDLL*QRLYNGDQYHDISSKILRILAAPHQQLNKDLSFWNET 391
           +   +D+  Q   NG     +S+  L  +   H +  +D+  WN T
Sbjct: 421 SAYALDIPRQ---NGSLSEQVSTVALSFIENIHSEAMRDILSWNTT 463

>UVRA_SYNY3 (P73412) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 970

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 12/32 (37%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = -3

Query: 316 DVMILVSIVQPLLEEINAILV-KHQLDMLKCT 224
           DV  L++++Q L+++ N++LV +H LD+++C+
Sbjct: 895 DVHHLLNVLQRLVDKGNSVLVIEHNLDVIRCS 926

>UVRA_CLOAB (Q97LQ1) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 939

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 316 DVMILVSIVQPLLEEINAILV-KHQLDMLKC 227
           DV  L+SI+Q L +  N ++V +H LD++KC
Sbjct: 866 DVKKLISILQRLTDMGNTVVVIEHNLDVIKC 896

>UVRA_AQUAE (O66911) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 926

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = -3

Query: 316 DVMILVSIVQPLLEEINAILV-KHQLDMLKC 227
           DV  L+ ++Q L+++ N ++V +H LD++KC
Sbjct: 846 DVKKLIDVLQRLVDKGNTVVVIEHNLDVIKC 876

>KCNB1_RAT (P15387) Potassium voltage-gated channel subfamily B member 1|
           (Voltage-gated potassium channel subunit Kv2.1) (DRK1)
          Length = 857

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 228 HLSMSSWCLTKMALISSSRGCTMETNIMTSPPKSSGS 338
           HLS + W  TK AL  +S   + ET    SP K+  S
Sbjct: 482 HLSPNKWKWTKRALSETSSSKSFETKEQGSPEKARSS 518

>KCNB1_MOUSE (Q03717) Potassium voltage-gated channel subfamily B member 1|
           (Voltage-gated potassium channel subunit Kv2.1) (mShab)
          Length = 857

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 228 HLSMSSWCLTKMALISSSRGCTMETNIMTSPPKSSGS 338
           HLS + W  TK AL  +S   + ET    SP K+  S
Sbjct: 482 HLSPNKWKWTKRALSETSSSKSFETKEQGSPEKARSS 518

>MOBC_BPT4 (P07074) Probable mobile endonuclease C|
          Length = 210

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 47  YSKDISDSLTKRESGTNHQQFLKETPTN 130
           + K ISD LT R   TNH++ +K +  N
Sbjct: 126 FGKRISDGLTGRTLSTNHKEHIKNSSRN 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,408,639
Number of Sequences: 219361
Number of extensions: 1329684
Number of successful extensions: 2842
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2842
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)