>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 654  EPGAPRHVPGAGVRGERPGIHNVPGVR-LPGALHLARRRGRPDVAHRGGAEG 502
            EPG P +   AG++GE PG+  +PG +  PG   +  +RG   +  + G  G
Sbjct: 1298 EPGKPGYAGAAGIKGE-PGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAG 1348

>CNTP1_MOUSE (O54991) Contactin-associated protein 1 precursor (Caspr) (Caspr1)|
            (Neurexin 4) (Neurexin IV) (Paranodin) (NCP1) (MHDNIV)
          Length = 1385

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 22/49 (44%), Positives = 25/49 (51%)
 Frame = -2

Query: 660  GHEPGAPRHVPGAGVRGERPGIHNVPGVRLPGALHLARRRGRPDVAHRG 514
            G+EPG   +VPG    G  PG H  PG RLP       R GRP   +RG
Sbjct: 1035 GYEPG---YVPGYDTPGYVPGYHG-PGYRLPE----YPRPGRPVPGYRG 1075

>Y1471_HAEIN (Q57130) Hypothetical ABC transporter permease protein HI1471|
          Length = 337

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
 Frame = -3

Query: 596 FIMFLVFDSLALFISLAVVVVQTSLIVVEQKAKRRMVFVMNKLMWLACLFISAAFIA--- 426
           F+ FL+  S+ L +S  +     +L+ +++K  + +   M  L WL  +F+S + +A   
Sbjct: 201 FVPFLLCSSILLSLSWRL-----NLLSLDEKEAKALGVKMAPLRWLV-IFLSGSLVACQV 254

Query: 425 ---------------LTYVVVGRDDWWLAWCTMAIGAVIML 348
                          L+ ++VG +   L  CTM +GA  ML
Sbjct: 255 AISGSIGWVGLIIPHLSRMLVGANHQSLLPCTMLVGATYML 295

>AUR1_SCHPO (Q10142) Aureobasidin A resistance protein homolog|
          Length = 422

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 461 LACLFISAAFIALTYVVVGRDDWWLAWCTMAIGAVIMLTTLGSMCYCIVAHRMEEK 294
           L  LF+S  F    +   G    WL WCTM +     +  +G MC  I+     +K
Sbjct: 261 LEALFLSHVFPRYRFCFYGYV-LWLCWCTMYLTHHYFVDLVGGMCLAIICFVFAQK 315

>MTR1L_SHEEP (Q28558) Melatonin-related receptor (G protein-coupled receptor 50)|
           (H9)
          Length = 575

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
 Frame = -3

Query: 602 PAFIMFLVFDSLALFISLAVVVVQTSLIVVEQKAKRRM-----VFVMNKLMWLACLFISA 438
           PA I+F+     A+ I++ V ++  S++++     +++     VFV++  +    + I  
Sbjct: 25  PALIVFMF---CAMVITIVVDLIGNSMVILAVSKNKKLRNSGNVFVVSLSVADMLVAIYP 81

Query: 437 AFIALTYVVVGRDDWWLAWCTMAIGAVIMLTTLGSMC---------YCIVAHRMEEKSMR 285
             + L  + +G  D     C M +G +  L+ +GS+          YC + H ++ + + 
Sbjct: 82  YPLMLHAMAIGGWDLSKLQCQM-VGFITGLSVVGSIFNIMAIAINRYCYICHSLQYERIF 140

Query: 284 KIRKASASQSRSWSMPVDSDDPEM 213
            +R      + +W M V +  P M
Sbjct: 141 SVRNTCIYLAVTWIMTVLAVLPNM 164

>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/63 (33%), Positives = 23/63 (36%)
 Frame = -2

Query: 660 GHEPGAPRHVPGAGVRGERPGIHNVPGVRLPGALHLARRRGRPDVAHRGGAEGQAEDGVR 481
           G  PG    +P A   G RPG     G   PG    A  +G     HR    GQ   G R
Sbjct: 182 GPRPGGSAGLPSAARPGPRPGAGRRTGAPRPGNNPFASSQGMGQSRHRSEG-GQRSGGSR 240

Query: 480 DEQ 472
             Q
Sbjct: 241 SGQ 243

>SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor|
          Length = 445

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 660 GHEPGAPRHVPGAGVRGERPGIHNVPGV--RLPGALHLARRRGRPDVAHRGGAEGQAEDG 487
           G++PG     PG G  G++PG  N PGV  R PG        G+P V  R    G     
Sbjct: 256 GNQPGVGGRQPGMG--GQQPGWGNQPGVGGRQPG------MGGQPGVGGRQPGFGNQPGM 307

Query: 486 VRDEQA 469
           V + QA
Sbjct: 308 VDNNQA 313

>DDX41_HUMAN (Q9UJV9) Probable ATP-dependent RNA helicase DDX41 (EC 3.6.1.-)|
           (DEAD box protein 41) (DEAD box protein abstrakt
           homolog)
          Length = 622

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 549 RRRGRPDVAHRGGAEGQAEDGVRDEQAHVAGVPLHLRR 436
           R+R R D    GG+  +AED   D++ +V  VPL  RR
Sbjct: 8   RKRARTDEVPAGGSRSEAED--EDDEDYVPYVPLRQRR 43

>MTR1L_MOUSE (O88495) Melatonin-related receptor (G protein-coupled receptor 50)|
           (H9)
          Length = 583

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
 Frame = -3

Query: 602 PAFIMFLVFDSLALFISLAVVVVQTSLIVVEQKAKRRMVFVMNKLMWLACLFISAAFIA- 426
           PA I+F+     A+ I++ V ++  S++++     +++    N  +++A L ++   +A 
Sbjct: 25  PALIIFMF---CAMVITVVVDLIGNSMVILAVTKNKKLRNSGN--IFVASLSVADMLVAI 79

Query: 425 ------LTYVVVGRDDWWLAWCTMA--------IGAVIMLTTLGSMCYCIVAHRMEEKSM 288
                 L  + VG  D     C M         +G++  +T +    YC + H ++ K +
Sbjct: 80  YPYPLMLYAMSVGGWDLSQLQCQMVGLVTGLSVVGSIFNITAIAINRYCYICHSLQYKRI 139

Query: 287 RKIRKASASQSRSWSMPVDSDDPEM 213
             +R        +W M V +  P M
Sbjct: 140 FSLRNTCIYLVVTWVMTVLAVLPNM 164

>NEP1_PYRAE (Q8ZW45) Probable ribosome biogenesis protein NEP1-like|
          Length = 221

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 642 PRHVPGAGVRGERPGIHNVPGVRLPGALHL---ARRRGRPDVAHR 517
           P  +  A  RG+RPG   +   R   A+ L   A+RRGRPD+ H+
Sbjct: 21  PAVLADARRRGKRPGEILLDRARHHPAMRLLADAKRRGRPDIVHQ 65

>SPEE_COREF (Q8FMF7) Probable spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 519

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
 Frame = -3

Query: 539 VVQTSLIVVEQKAKRRMVFVMNK--LMWLACLFI------------SAAFIALTYVVVGR 402
           +V+TSLIV    A   +  ++ K  L W A  F+            SA  + +T+ VVG+
Sbjct: 48  IVETSLIVAGYVAALGVGAILVKPFLRWPAQTFLAVETLLGLIGGLSALVLYMTFAVVGQ 107

Query: 401 DDWWLAWCTMAIGAVI 354
           + W L   T  IG ++
Sbjct: 108 NLWMLVLATALIGILV 123

>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 21/52 (40%), Positives = 23/52 (44%)
 Frame = -2

Query: 654 EPGAPRHVPGAGVRGERPGIHNVPGVRLPGALHLARRRGRPDVAHRGGAEGQ 499
           EPG P     AG     PG+   PG   PG   LA  RG P    R G EG+
Sbjct: 473 EPGYPGPSGDAGA----PGVQGYPGP--PGPRGLAGNRGVPGQPGRQGVEGR 518

>LEG3_CANFA (P38486) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29)
          Length = 295

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 26/74 (35%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
 Frame = -2

Query: 660 GHEPGAPRHVPGAGVRGERPGIH---NVPGVRLPGALH-LARRRGRPDVAHRGGAEGQAE 493
           G++P      PGA   G  PG       PG   PG     A   G P  A  GG  GQA 
Sbjct: 26  GNQPAGAGGYPGASYPGAYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAP 85

Query: 492 DGVRDEQAHVAGVP 451
            G    QA   G P
Sbjct: 86  PGGYPGQAPPGGYP 99

>ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)|
          Length = 747

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 633 VPGAGVRGER-PGIHNVPGVRLPGALHLARRRGRPDVAHRGGAEG 502
           VPG GV G   PG+  VPGV +PGAL  A        A + GA G
Sbjct: 369 VPGVGVPGVGVPGV-GVPGVGVPGALSPAATAKAAAKAAKFGARG 412



 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 660 GHEPGAPRHVPGAGVRGERPGIHNVPGVRLPGA 562
           G  PGAP  +PG       PG+  VPGV +P A
Sbjct: 459 GVVPGAPGAIPGL------PGVGGVPGVGIPAA 485

>ELN_CHICK (P07916) Elastin precursor (Tropoelastin) (Fragment)|
          Length = 750

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 27/75 (36%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
 Frame = -2

Query: 660 GHEPGAPRHVPGAG-----VRGERPGIHNVPGVRLPGALHLARRRGRPDVAHRGGAEGQA 496
           G  PG    VPG G     V G  PG+  VPGV  P A   A  +     A  GG  G  
Sbjct: 546 GLVPGVGGLVPGVGGLAPGVGGLAPGVGAVPGVGGPAAAAKAAAKAAKYGAGVGGVPGAV 605

Query: 495 EDGVRDEQAHVAGVP 451
              V      V GVP
Sbjct: 606 PGAV----PGVPGVP 616



 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 648 GAPRHVPGAGVRGERPGIHNVP--GVRLPG 565
           G P  VPGAG+ G  PG   +P  G+R PG
Sbjct: 155 GKPPKVPGAGIPGAFPGGGVLPGAGIRFPG 184

>VE4_HPV08 (P06425) Probable protein E4|
          Length = 229

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 339 EGGEHDHRADGHGAPGQPPVVAADHHVGQSYEGGGDEE 452
           EG    H  DG    G PP   ++ H G+  EG G+EE
Sbjct: 132 EGQVEGHPGDGDQPQGHPPPTPSNGHKGE--EGDGEEE 167

>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 699

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 339 EGGEHDHRADGHGAPGQPPVVAADHHVGQSYEGGGDEE 452
           E G   HR  GHG+     V    HH G S+   G EE
Sbjct: 208 EYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEE 245

>DDX41_MOUSE (Q91VN6) Probable ATP-dependent RNA helicase DDX41 (EC 3.6.1.-)|
           (DEAD box protein 41)
          Length = 622

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 549 RRRGRPDVAHRGGAEGQAEDGVRDEQAHVAGVPLHLRR 436
           R+R R D A  GG+  + ED   D++ +V  VPL  RR
Sbjct: 8   RKRARADEATAGGSRSEDED--EDDEDYVPYVPLRQRR 43

>C1QL3_MOUSE (Q9ESN4) Complement C1q-like protein 3 precursor (Gliacolin)|
          Length = 255

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
 Frame = -2

Query: 654 EPGAPRHVPGAGVRGER-----PGIHNVPGVRLPGALHLARRRGRPDVAHRGGAEGQAE 493
           EPG P  V   G +GE      PG    PG+   GA+  A     P +A   G + Q E
Sbjct: 80  EPGPPGPVGPPGEKGEPGRQGLPGPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHE 138

>VGLB_HSVA1 (Q04463) Glycoprotein B precursor|
          Length = 933

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 25/65 (38%), Positives = 28/65 (43%)
 Frame = -2

Query: 654 EPGAPRHVPGAGVRGERPGIHNVPGVRLPGALHLARRRGRPDVAHRGGAEGQAEDGVRDE 475
           E   P  VPG+G   E PG    P  R PG     RRRG P    R  A  Q  + +R  
Sbjct: 70  EGHTPTDVPGSGP--ESPGPDRPP--RGPGG-GSGRRRGSPGNGTRSAARRQLRESLRRI 124

Query: 474 QAHVA 460
           QA  A
Sbjct: 125 QAEYA 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,130,308
Number of Sequences: 219361
Number of extensions: 1459106
Number of successful extensions: 5102
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5071
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)