ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal17i12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY224493.1| Oryza sativa (japonica cultivar-group) isolate 30868 unknown mRNA Length = 1503 Score = 339 bits (171), Expect = 4e-90 Identities = 258/288 (89%) Strand = Plus / Minus Query: 57 tcaggtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 116 ||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 1503 tcaggtgttcttctctagaacagataatgccggtgtaagatagttgttagctttatctgg 1444 Query: 117 caaatgagccacaagttcatacagtncattcccttgctcagaaacatactcatagcatac 176 ||||| |||||||||||||| || |||||||||||| || |||||||| |||||||| Sbjct: 1443 taaatgggccacaagttcatatagctcattcccttgcttagctacatactcgtagcatac 1384 Query: 177 atcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctac 236 ||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||| Sbjct: 1383 atcaaaacttttgttcctagcagtggaatcatgcaatgctttgacacaaatatctgctac 1324 Query: 237 atccgcacagctgatagcctgagagattctgnctccttgatcaaagatcagtgcacgctg 296 ||| || || |||||| |||| ||||||||| |||||||||||||||| ||||||||| Sbjct: 1323 atcggcgcaactgataccctgcgagattctgttcccttgatcaaagatcaatgcacgctg 1264 Query: 297 accgccaggttcttcctgcagcggaccaggccgtacaattgtgtatcc 344 ||| ||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct: 1263 accaccaggttcttcctgcagtggaccagggcgtactattgtgtatcc 1216
>dbj|AK120907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031L08, full insert sequence Length = 2197 Score = 339 bits (171), Expect = 4e-90 Identities = 258/288 (89%) Strand = Plus / Minus Query: 57 tcaggtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 116 ||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 1997 tcaggtgttcttctctagaacagataatgccggtgtaagatagttgttagctttatctgg 1938 Query: 117 caaatgagccacaagttcatacagtncattcccttgctcagaaacatactcatagcatac 176 ||||| |||||||||||||| || |||||||||||| || |||||||| |||||||| Sbjct: 1937 taaatgggccacaagttcatatagctcattcccttgcttagctacatactcgtagcatac 1878 Query: 177 atcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctac 236 ||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||| Sbjct: 1877 atcaaaacttttgttcctagcagtggaatcatgcaatgctttgacacaaatatctgctac 1818 Query: 237 atccgcacagctgatagcctgagagattctgnctccttgatcaaagatcagtgcacgctg 296 ||| || || |||||| |||| ||||||||| |||||||||||||||| ||||||||| Sbjct: 1817 atcggcgcaactgataccctgcgagattctgttcccttgatcaaagatcaatgcacgctg 1758 Query: 297 accgccaggttcttcctgcagcggaccaggccgtacaattgtgtatcc 344 ||| ||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct: 1757 accaccaggttcttcctgcagtggaccagggcgtactattgtgtatcc 1710
>ref|XM_464065.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1797 Score = 252 bits (127), Expect = 6e-64 Identities = 247/288 (85%) Strand = Plus / Minus Query: 57 tcaggtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 116 ||||||||| ||||| ||||| || || || |||| || || ||||| ||||| || || Sbjct: 1797 tcaggtgttcttctcaagaacagagagagctggtgccaggtaattgttcgccttgtcagg 1738 Query: 117 caaatgagccacaagttcatacagtncattcccttgctcagaaacatactcatagcatac 176 ||||||||||||||||||||||| ||| |||||||| || |||| |||||||| || Sbjct: 1737 caaatgagccacaagttcatacaactcatccccttgctttgagacatgttcatagcacac 1678 Query: 177 atcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctac 236 |||||| ||||||||||| || || ||||| |||||||| |||||||||||||||||||| Sbjct: 1677 atcaaagcttttgtttcttgctgttgaatcgtgcaatgccttgacacagatatctgctac 1618 Query: 237 atccgcacagctgatagcctgagagattctgnctccttgatcaaagatcagtgcacgctg 296 || |||||||||||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 1617 gtcggcacagctgataccctgagagattctgttcccttgatcaaagatcagagcacgctg 1558 Query: 297 accgccaggttcttcctgcagcggaccaggccgtacaattgtgtatcc 344 ||||||||||||||||||||| ||||| || | ||||||||| ||||| Sbjct: 1557 accgccaggttcttcctgcagaggacctgggcatacaattgtatatcc 1510
>gb|AY110583.1| Zea mays CL25181_-1 mRNA sequence Length = 594 Score = 174 bits (88), Expect = 1e-40 Identities = 185/218 (84%) Strand = Plus / Plus Query: 127 acaagttcatacagtncattcccttgctcagaaacatactcatagcatacatcaaaactt 186 ||||||||||| || | |||||||| ||| || ||||| ||||||||||| |||||| Sbjct: 237 acaagttcataaagctcgttcccttggtcactgacgtactcgtagcatacatcgaaactt 296 Query: 187 ttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctacatccgcacag 246 ||||||||||| ||||||||||||| ||| |||||||||||||| || ||||| |||||| Sbjct: 297 ttgtttctcgcagtggaatcatgcagtgccttgacacagatatcagccacatcagcacag 356 Query: 247 ctgatagcctgagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggt 306 |||||| |||| ||||||||| |||||||| |||||||| || ||||| || |||||| Sbjct: 357 ctgataccctgggagattctgttcccttgatcgaagatcagcgcgcgctggccaccaggt 416 Query: 307 tcttcctgcagcggaccaggccgtacaattgtgtatcc 344 ||||||||||| ||||| || || || ||||| ||||| Sbjct: 417 tcttcctgcagaggacccgggcgcacgattgtatatcc 454 Score = 44.1 bits (22), Expect = 0.29 Identities = 33/37 (89%) Strand = Plus / Plus Query: 55 aatcaggtgttnttctctagaaccgatagtgccggtg 91 ||||||||||| ||||||||||| || ||||| |||| Sbjct: 165 aatcaggtgttcttctctagaacagacagtgctggtg 201
>ref|NM_101533.3| Arabidopsis thaliana oxidoreductase AT1G16720 mRNA, complete cds Length = 2100 Score = 141 bits (71), Expect = 2e-30 Identities = 230/284 (80%) Strand = Plus / Minus Query: 61 gtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctggcaaa 120 ||||| ||||| || || |||| ||||| || ||||||||||| ||||| ||||||||| Sbjct: 1866 gtgttcttctcaagtacagataaagccggagtcagatagttgttcgccttgtctggcaaa 1807 Query: 121 tgagccacaagttcatacagtncattcccttgctcagaaacatactcatagcatacatca 180 |||||||| || ||||| ||| | | |||||||||| ||| || |||| ||| |||||| Sbjct: 1806 tgagccaccagctcatagagttctattccttgctcagcaacgtattcatggcaaacatca 1747 Query: 181 aaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctacatcc 240 || ||||||||||| || || ||||| |||| ||| |||||||| ||||| || |||||| Sbjct: 1746 aagcttttgtttctggcggttgaatcgtgcagtgccttgacacatatatcagccacatcc 1687 Query: 241 gcacagctgatagcctgagagattctgnctccttgatcaaagatcagtgcacgctgaccg 300 || || || || ||||||| |||||| |||||||||||| ||||| || || || ||| Sbjct: 1686 gcgcaactaatgccctgagaaattctgtttccttgatcaaatatcagagctcgttgcccg 1627 Query: 301 ccaggttcttcctgcagcggaccaggccgtacaattgtgtatcc 344 || ||||| |||| || |||||||| || | ||||||||||| Sbjct: 1626 cctggttcctccttcaagggaccaggacgaatgattgtgtatcc 1583
>gb|AY128723.1| Arabidopsis thaliana unknown protein (At1g16720) mRNA, complete cds Length = 1863 Score = 141 bits (71), Expect = 2e-30 Identities = 230/284 (80%) Strand = Plus / Minus Query: 61 gtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctggcaaa 120 ||||| ||||| || || |||| ||||| || ||||||||||| ||||| ||||||||| Sbjct: 1793 gtgttcttctcaagtacagataaagccggagtcagatagttgttcgccttgtctggcaaa 1734 Query: 121 tgagccacaagttcatacagtncattcccttgctcagaaacatactcatagcatacatca 180 |||||||| || ||||| ||| | | |||||||||| ||| || |||| ||| |||||| Sbjct: 1733 tgagccaccagctcatagagttctattccttgctcagcaacgtattcatggcaaacatca 1674 Query: 181 aaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctacatcc 240 || ||||||||||| || || ||||| |||| ||| |||||||| ||||| || |||||| Sbjct: 1673 aagcttttgtttctggcggttgaatcgtgcagtgccttgacacatatatcagccacatcc 1614 Query: 241 gcacagctgatagcctgagagattctgnctccttgatcaaagatcagtgcacgctgaccg 300 || || || || ||||||| |||||| |||||||||||| ||||| || || || ||| Sbjct: 1613 gcgcaactaatgccctgagaaattctgtttccttgatcaaatatcagagctcgttgcccg 1554 Query: 301 ccaggttcttcctgcagcggaccaggccgtacaattgtgtatcc 344 || ||||| |||| || |||||||| || | ||||||||||| Sbjct: 1553 cctggttcctccttcaagggaccaggacgaatgattgtgtatcc 1510
>gb|AY062632.1| Arabidopsis thaliana Unknown protein (At1g16720; F17F16.7) mRNA, complete cds Length = 2040 Score = 141 bits (71), Expect = 2e-30 Identities = 230/284 (80%) Strand = Plus / Minus Query: 61 gtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctggcaaa 120 ||||| ||||| || || |||| ||||| || ||||||||||| ||||| ||||||||| Sbjct: 1866 gtgttcttctcaagtacagataaagccggagtcagatagttgttcgccttgtctggcaaa 1807 Query: 121 tgagccacaagttcatacagtncattcccttgctcagaaacatactcatagcatacatca 180 |||||||| || ||||| ||| | | |||||||||| ||| || |||| ||| |||||| Sbjct: 1806 tgagccaccagctcatagagttctattccttgctcagcaacgtattcatggcaaacatca 1747 Query: 181 aaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctacatcc 240 || ||||||||||| || || ||||| |||| ||| |||||||| ||||| || |||||| Sbjct: 1746 aagcttttgtttctggcggttgaatcgtgcagtgccttgacacatatatcagccacatcc 1687 Query: 241 gcacagctgatagcctgagagattctgnctccttgatcaaagatcagtgcacgctgaccg 300 || || || || ||||||| |||||| |||||||||||| ||||| || || || ||| Sbjct: 1686 gcgcaactaatgccctgagaaattctgtttccttgatcaaatatcagagctcgttgcccg 1627 Query: 301 ccaggttcttcctgcagcggaccaggccgtacaattgtgtatcc 344 || ||||| |||| || |||||||| || | ||||||||||| Sbjct: 1626 cctggttcctccttcaagggaccaggacgaatgattgtgtatcc 1583
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 174 tacatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgc 233 |||||||||||||||||| || || |||||||||||||||||||||||||| |||||||| Sbjct: 29247135 tacatcaaaacttttgttcctagcagtggaatcatgcaatgctttgacacaaatatctgc 29247194 Query: 234 tacatccgcacagctgata 252 |||||| || || |||||| Sbjct: 29247195 tacatcggcgcaactgata 29247213 Score = 97.6 bits (49), Expect = 2e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 57 tcaggtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 116 ||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 29246828 tcaggtgttcttctctagaacagataatgccggtgtaagatagttgttagctttatctgg 29246887 Query: 117 caaatgagccac 128 ||||| ||||| Sbjct: 29246888 taaatgggccac 29246899 Score = 75.8 bits (38), Expect = 8e-11 Identities = 55/61 (90%) Strand = Plus / Plus Query: 254 cctgagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggttcttcct 313 |||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 29247303 cctgcgagattctgttcccttgatcaaagatcaatgcacgctgaccaccaggttcttcct 29247362 Query: 314 g 314 | Sbjct: 29247363 g 29247363 Score = 48.1 bits (24), Expect = 0.019 Identities = 44/51 (86%) Strand = Plus / Plus Query: 126 cacaagttcatacagtncattcccttgctcagaaacatactcatagcatac 176 |||||||||||| || |||||||||||| || |||||||| |||||||| Sbjct: 29247008 cacaagttcatatagctcattcccttgcttagctacatactcgtagcatac 29247058 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 311 cctgcagcggaccaggccgtacaattgtgtatcc 344 ||||||| |||||||| ||||| ||||||||||| Sbjct: 29247596 cctgcagtggaccagggcgtactattgtgtatcc 29247629
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 101 bits (51), Expect = 1e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 174 tacatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgc 233 |||||||||||||||||| || || |||||||||||||||||||||||||| |||||||| Sbjct: 9933 tacatcaaaacttttgttcctagcagtggaatcatgcaatgctttgacacaaatatctgc 9992 Query: 234 tacatccgcacagctgata 252 |||||| || || |||||| Sbjct: 9993 tacatcggcgcaactgata 10011 Score = 97.6 bits (49), Expect = 2e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 57 tcaggtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 116 ||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 9626 tcaggtgttcttctctagaacagataatgccggtgtaagatagttgttagctttatctgg 9685 Query: 117 caaatgagccac 128 ||||| ||||| Sbjct: 9686 taaatgggccac 9697 Score = 75.8 bits (38), Expect = 8e-11 Identities = 55/61 (90%) Strand = Plus / Plus Query: 254 cctgagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggttcttcct 313 |||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 10101 cctgcgagattctgttcccttgatcaaagatcaatgcacgctgaccaccaggttcttcct 10160 Query: 314 g 314 | Sbjct: 10161 g 10161 Score = 48.1 bits (24), Expect = 0.019 Identities = 44/51 (86%) Strand = Plus / Plus Query: 126 cacaagttcatacagtncattcccttgctcagaaacatactcatagcatac 176 |||||||||||| || |||||||||||| || |||||||| |||||||| Sbjct: 9806 cacaagttcatatagctcattcccttgcttagctacatactcgtagcatac 9856 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 311 cctgcagcggaccaggccgtacaattgtgtatcc 344 ||||||| |||||||| ||||| ||||||||||| Sbjct: 10394 cctgcagtggaccagggcgtactattgtgtatcc 10427
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 95.6 bits (48), Expect = 9e-17 Identities = 75/84 (89%) Strand = Plus / Minus Query: 174 tacatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgc 233 ||||||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||| Sbjct: 2005076 tacatcaaagcttttgtttcttgctgttgaatcgtgcaatgccttgacacagatatctgc 2005017 Query: 234 tacatccgcacagctgatagcctg 257 ||| || |||||||||||| |||| Sbjct: 2005016 tacgtcggcacagctgataccctg 2004993 Score = 91.7 bits (46), Expect = 1e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 254 cctgagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggttcttcct 313 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2004893 cctgagagattctgttcccttgatcaaagatcagagcacgctgaccgccaggttcttcct 2004834 Query: 314 g 314 | Sbjct: 2004833 g 2004833 Score = 46.1 bits (23), Expect = 0.074 Identities = 61/74 (82%) Strand = Plus / Minus Query: 55 aatcaggtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatct 114 ||||||||||| ||||| ||||| || || || |||| || || ||||| ||||| || Sbjct: 2005403 aatcaggtgttcttctcaagaacagagagagctggtgccaggtaattgttcgccttgtca 2005344 Query: 115 ggcaaatgagccac 128 |||||||||||||| Sbjct: 2005343 ggcaaatgagccac 2005330 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 acagctgatagcctgagaga 262 |||||||||||||||||||| Sbjct: 31669186 acagctgatagcctgagaga 31669167
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 95.6 bits (48), Expect = 9e-17 Identities = 75/84 (89%) Strand = Plus / Minus Query: 174 tacatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgc 233 ||||||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||| Sbjct: 55284 tacatcaaagcttttgtttcttgctgttgaatcgtgcaatgccttgacacagatatctgc 55225 Query: 234 tacatccgcacagctgatagcctg 257 ||| || |||||||||||| |||| Sbjct: 55224 tacgtcggcacagctgataccctg 55201 Score = 91.7 bits (46), Expect = 1e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 254 cctgagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggttcttcct 313 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 55101 cctgagagattctgttcccttgatcaaagatcagagcacgctgaccgccaggttcttcct 55042 Query: 314 g 314 | Sbjct: 55041 g 55041 Score = 46.1 bits (23), Expect = 0.074 Identities = 61/74 (82%) Strand = Plus / Minus Query: 55 aatcaggtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatct 114 ||||||||||| ||||| ||||| || || || |||| || || ||||| ||||| || Sbjct: 55611 aatcaggtgttcttctcaagaacagagagagctggtgccaggtaattgttcgccttgtca 55552 Query: 115 ggcaaatgagccac 128 |||||||||||||| Sbjct: 55551 ggcaaatgagccac 55538
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13 Length = 144624 Score = 91.7 bits (46), Expect = 1e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 254 cctgagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggttcttcct 313 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 144454 cctgagagattctgttcccttgatcaaagatcagagcacgctgaccgccaggttcttcct 144395 Query: 314 g 314 | Sbjct: 144394 g 144394 Score = 77.8 bits (39), Expect = 2e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 187 ttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctacatccgcacag 246 |||||||| || || ||||| |||||||| |||||||||||||||||||| || |||||| Sbjct: 144624 ttgtttcttgctgttgaatcgtgcaatgccttgacacagatatctgctacgtcggcacag 144565 Query: 247 ctgatagcctg 257 |||||| |||| Sbjct: 144564 ctgataccctg 144554
>gb|AC144538.23| Medicago truncatula clone mth2-31l21, complete sequence Length = 135050 Score = 61.9 bits (31), Expect = 1e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 257 gagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggttcttcctg 314 |||| |||||| ||||||||||||| || || |||||||| || |||||||||||||| Sbjct: 45292 gagatattctgtctccttgatcaaatattagagcacgctgcccaccaggttcttcctg 45235 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 175 acatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgct 234 |||||||| ||||||||||| || || |||||||| | ||| || ||||| ||||| ||| Sbjct: 45568 acatcaaagcttttgtttcttgcagttgaatcatggagtgccttcacacatatatcggct 45509 Query: 235 acatccgcacagctgat 251 ||||| ||||| ||||| Sbjct: 45508 acatcagcacaactgat 45492
>gb|AC011808.4|AC011808 Arabidopsis thaliana chromosome I BAC F19K19 genomic sequence, complete sequence Length = 93485 Score = 58.0 bits (29), Expect = 2e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 61 gtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctggcaaa 120 ||||| ||||| || || |||| ||||| || ||||||||||| ||||| ||||||||| Sbjct: 12415 gtgttcttctcaagtacagataaagccggagtcagatagttgttcgccttgtctggcaaa 12474 Query: 121 tgagccac 128 |||||||| Sbjct: 12475 tgagccac 12482 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 175 acatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgct 234 |||||||| ||||||||||| || || ||||| |||| ||| |||||||| ||||| || Sbjct: 12755 acatcaaagcttttgtttctggcggttgaatcgtgcagtgccttgacacatatatcagcc 12814 Query: 235 acatccgc 242 |||||||| Sbjct: 12815 acatccgc 12822 Score = 42.1 bits (21), Expect = 1.2 Identities = 50/60 (83%) Strand = Plus / Plus Query: 254 cctgagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggttcttcct 313 ||||||| |||||| |||||||||||| ||||| || || || ||||| ||||| |||| Sbjct: 12933 cctgagaaattctgtttccttgatcaaatatcagagctcgttgcccgcctggttcctcct 12992
>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete sequence Length = 90498 Score = 58.0 bits (29), Expect = 2e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 61 gtgttnttctctagaaccgatagtgccggtgtaagatagttgttagccttatctggcaaa 120 ||||| ||||| || || |||| ||||| || ||||||||||| ||||| ||||||||| Sbjct: 74692 gtgttcttctcaagtacagataaagccggagtcagatagttgttcgccttgtctggcaaa 74751 Query: 121 tgagccac 128 |||||||| Sbjct: 74752 tgagccac 74759 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 175 acatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgct 234 |||||||| ||||||||||| || || ||||| |||| ||| |||||||| ||||| || Sbjct: 75032 acatcaaagcttttgtttctggcggttgaatcgtgcagtgccttgacacatatatcagcc 75091 Query: 235 acatccgc 242 |||||||| Sbjct: 75092 acatccgc 75099 Score = 42.1 bits (21), Expect = 1.2 Identities = 50/60 (83%) Strand = Plus / Plus Query: 254 cctgagagattctgnctccttgatcaaagatcagtgcacgctgaccgccaggttcttcct 313 ||||||| |||||| |||||||||||| ||||| || || || ||||| ||||| |||| Sbjct: 75210 cctgagaaattctgtttccttgatcaaatatcagagctcgttgcccgcctggttcctcct 75269
>dbj|AP007265.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT11L01, TM1658, complete sequence Length = 99089 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 175 acatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgct 234 |||||||| ||||||||||| || || |||||||| | ||| || ||||| ||||| || Sbjct: 26276 acatcaaagcttttgtttcttgcagttgaatcatgtagtgccttcacacatatatcagcc 26335 Query: 235 acatccgcacagctgat 251 ||||| ||||||||||| Sbjct: 26336 acatcagcacagctgat 26352 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 270 tccttgatcaaagatcagtgcacgctgaccgccaggttcttcctg 314 |||||||||||| || || || ||||| || |||||||||||||| Sbjct: 26520 tccttgatcaaatattagagcgcgctgcccaccaggttcttcctg 26564
>gb|AY342055.1| Siphonodentalium lobatum mitochondrion, complete genome Length = 13932 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 aggttcttcctgcagcggacc 323 ||||||||||||||||||||| Sbjct: 7657 aggttcttcctgcagcggacc 7677
>ref|XM_765697.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_23_24616_25470) partial mRNA Length = 855 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ctcagaaacatactcatagca 173 ||||||||||||||||||||| Sbjct: 27 ctcagaaacatactcatagca 7
>gb|AC087732.11| Homo sapiens chromosome 15, clone RP11-565O12, complete sequence Length = 40080 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tggaatcatgcaatgctttg 219 |||||||||||||||||||| Sbjct: 8229 tggaatcatgcaatgctttg 8248
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 acagctgatagcctgagaga 262 |||||||||||||||||||| Sbjct: 48973 acagctgatagcctgagaga 48954
>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete sequence Length = 243969 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tcccttgctcagaaacatac 165 |||||||||||||||||||| Sbjct: 55547 tcccttgctcagaaacatac 55528
>gb|AC154178.1| Mus musculus BAC clone RP23-465N18 from 17, complete sequence Length = 191399 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 catgcaatgctttgacacagatat 229 ||||||||||||||||||| |||| Sbjct: 72826 catgcaatgctttgacacatatat 72803 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,172,791 Number of Sequences: 3902068 Number of extensions: 2172791 Number of successful extensions: 37288 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37158 Number of HSP's gapped (non-prelim): 130 length of query: 344 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 322 effective length of database: 17,147,199,772 effective search space: 5521398326584 effective search space used: 5521398326584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
