>CRYD_SYNY3 (P77967) Cryptochrome DASH|
          Length = 489

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 39/79 (49%), Positives = 55/79 (69%)
 Frame = -3

Query: 586 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 407
           T+N + GA++S K SPWLA GCLSPRF+Y+E+K++            + +  S+  T+WL
Sbjct: 239 TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRY------------EQERVSNDSTHWL 286

Query: 406 MFELLWRDFFRFVTKKYSS 350
           +FELLWRDFFRFV +KY +
Sbjct: 287 IFELLWRDFFRFVAQKYGN 305

>CRYD_BRARE (Q4KML2) Cryptochrome DASH (Protein CRY-DASH) (zCRY-DASH)|
          Length = 520

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 42/103 (40%), Positives = 62/103 (60%)
 Frame = -3

Query: 658 EALXRLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHA 479
           EAL RLK +  +       A    T+N + G +FS K SPWLA GC+SPR++YE++KK+ 
Sbjct: 221 EALARLKHYFWDTNAV---ATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYE 277

Query: 478 IRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 350
           +            + T++  T W++FELLWRD+F+FV  KY +
Sbjct: 278 V------------ERTANQSTYWVIFELLWRDYFKFVALKYGN 308

>CRYD_XENLA (Q75WS4) Cryptochrome DASH|
          Length = 523

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 40/101 (39%), Positives = 63/101 (62%)
 Frame = -3

Query: 658 EALXRLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHA 479
           +AL RL+ +  E  +  +   KD T+N + G ++S K +PWLA GC+SPR++YE++ K+ 
Sbjct: 222 QALQRLEHYFWETNLVAS--YKD-TRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKY- 277

Query: 478 IRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKY 356
                      + + T++  T W++FELLWRD+FRFV  KY
Sbjct: 278 -----------EKERTANQSTYWVIFELLWRDYFRFVALKY 307

>CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 582

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 34/84 (40%), Positives = 54/84 (64%)
 Frame = -3

Query: 598 VKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAG 419
           V   T+N + G ++S K SPWLA+G LSPR++ EE+K++  + I + S            
Sbjct: 333 VYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRIANDS------------ 380

Query: 418 TNWLMFELLWRDFFRFVTKKYSSA 347
           T W++FEL+WRD+FRF++ KY ++
Sbjct: 381 TYWVLFELIWRDYFRFISAKYGNS 404

>CRYD_ARATH (Q84KJ5) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 569

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 33/80 (41%), Positives = 51/80 (63%)
 Frame = -3

Query: 598 VKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAG 419
           V   T+N + G ++S K SPWLA GC+SPRF+YEE++++    + + S            
Sbjct: 315 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS------------ 362

Query: 418 TNWLMFELLWRDFFRFVTKK 359
           T W++FEL+WRD+FRF++ K
Sbjct: 363 TYWVLFELIWRDYFRFLSIK 382

>CRYD_NATPD (Q3IPX9) Cryptochrome DASH|
          Length = 474

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 32/80 (40%), Positives = 52/80 (65%)
 Frame = -3

Query: 589 STQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNW 410
           +T+N + GA++S K SPWLA GCLSPR+++ E++++            + +  ++  T W
Sbjct: 234 TTRNGLLGADYSSKFSPWLAAGCLSPRWLHREVERY------------EDERVANEDTYW 281

Query: 409 LMFELLWRDFFRFVTKKYSS 350
           L+FEL WRDFF+F  +KY +
Sbjct: 282 LVFELAWRDFFQFQFEKYGA 301

>CRYD_GLOVI (Q7NMD1) Cryptochrome DASH|
          Length = 500

 Score = 70.1 bits (170), Expect = 6e-12
 Identities = 32/77 (41%), Positives = 49/77 (63%)
 Frame = -3

Query: 586 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 407
           T+N + GA++S K S WLA GCLS R+++E+++ +  + I + S            T WL
Sbjct: 237 TRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIKNDS------------TYWL 284

Query: 406 MFELLWRDFFRFVTKKY 356
           +FELLWRD+FRF+  K+
Sbjct: 285 IFELLWRDYFRFIAAKH 301

>CRYD_LYCES (Q38JU2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
           (Cryptochrome-3)
          Length = 577

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 33/83 (39%), Positives = 53/83 (63%)
 Frame = -3

Query: 598 VKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAG 419
           V   T+N + GA++S K SPWLA+G LSPRF+ EE+K++            + +  S+  
Sbjct: 323 VYKETRNGMLGADYSTKFSPWLASGSLSPRFIDEEVKRY------------EKERLSNDS 370

Query: 418 TNWLMFELLWRDFFRFVTKKYSS 350
           T W++FEL+WRD+F F++ K ++
Sbjct: 371 TYWVLFELIWRDYFGFLSIKLAN 393

>CRYD_OSTTA (Q5IFN2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 546

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 33/102 (32%), Positives = 56/102 (54%)
 Frame = -3

Query: 655 ALXRLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAI 476
           AL R+K +  E       A    T+N + G ++S K++PWLA GC+SPR +  E++++  
Sbjct: 250 ALARVKYYLWE---SDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRY-- 304

Query: 475 RAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSS 350
                     + +   +  T W++FEL+WRDFF+F   K+ +
Sbjct: 305 ----------ESERVENKSTYWVIFELIWRDFFKFFALKHGN 336

>CRYD_RHOBA (Q7UJB1) Cryptochrome DASH|
          Length = 488

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 29/83 (34%), Positives = 49/83 (59%)
 Frame = -3

Query: 598 VKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAG 419
           V   T+N +   N S K SPWLA GCLSPR + + ++++            + +   +  
Sbjct: 232 VYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRY------------EEERVKNKS 279

Query: 418 TNWLMFELLWRDFFRFVTKKYSS 350
           T W++FELLWRD+FR++++K+ +
Sbjct: 280 TYWMIFELLWRDYFRWISRKHGA 302

>CRYD_VIBPA (Q87JP5) Cryptochrome DASH|
          Length = 445

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 29/77 (37%), Positives = 45/77 (58%)
 Frame = -3

Query: 586 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 407
           T+N + G  +S K SPWLA GC+SPR ++  LK++           +   G +D+ T W+
Sbjct: 225 TRNGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQY-----------EQTQGANDS-TYWI 272

Query: 406 MFELLWRDFFRFVTKKY 356
            FELLWR++F +  + Y
Sbjct: 273 YFELLWREYFYWYARCY 289

>CRYD_VIBCH (Q9KR33) Cryptochrome DASH|
          Length = 461

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 27/79 (34%), Positives = 47/79 (59%)
 Frame = -3

Query: 586 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 407
           T+N + G ++S K SPWLA G +SP+ +Y  L+++           +   G +D+ T W+
Sbjct: 225 TRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRY-----------EAVHGANDS-TYWI 272

Query: 406 MFELLWRDFFRFVTKKYSS 350
            FELLWR++F +  ++Y +
Sbjct: 273 FFELLWREYFYWYARRYGA 291

>CRYD_NEUCR (Q7SI68) Putative crytochrome DASH, mitochondrial precursor|
          Length = 745

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
 Frame = -3

Query: 604 KAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPK----DGD 437
           K+ KDS +N + G +FS K+S +LA GC++ R ++     HA+ A   G+  K    DG 
Sbjct: 285 KSYKDS-RNGLLGPDFSTKLSAYLAQGCVTARQIH-----HALVAYEDGTGTKYKGADGF 338

Query: 436 GTSD-AGTNWLMFELLWRDFFRFVTKKY 356
           G  D  GT  +  ELLWRD+ R   +KY
Sbjct: 339 GEGDNQGTETVRMELLWRDYMRLCHQKY 366

>CRYD_GIBZE (Q4I1Q6) Putative crytochrome DASH|
          Length = 678

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = -3

Query: 586 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 407
           T+N + G  +S K+S +LA G ++ R ++ EL K    +  S S         + GT  +
Sbjct: 268 TRNGLLGTEYSTKLSAFLAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAV 327

Query: 406 MFELLWRDFFRFVTKKY 356
            FELLWRD+ R  T K+
Sbjct: 328 RFELLWRDYMRLCTFKF 344

>CRYD_IDILO (Q5QXE0) Cryptochrome DASH|
          Length = 449

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = -3

Query: 586 TQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWL 407
           T+N++   + S K SPWLA GCLS R +   L+ +            + +   +  + W+
Sbjct: 237 TRNALDDFSSSTKFSPWLAQGCLSVRQIMAALRAY------------ETEFGENESSYWI 284

Query: 406 MFELLWRDFFRFVTKKY 356
            FELLWR++F +   K+
Sbjct: 285 SFELLWREYFFWYALKH 301

>PHR_ECOLI (P00914) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 472

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 30/105 (28%), Positives = 46/105 (43%)
 Frame = -3

Query: 655 ALXRLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAI 476
           A+ +L++F        N A +   Q        + ++S  LATG LSPR     L     
Sbjct: 208 AIAQLRQFCQ------NGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQP 261

Query: 475 RAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSSAQK 341
           +A+  G           AG+ WL  EL+WR+F+R +   + S  K
Sbjct: 262 QALDGG-----------AGSVWLN-ELIWREFYRHLITYHPSLCK 294

>PHR_SALTY (P25078) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 473

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = -3

Query: 550 KISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRF 371
           ++S  LATG LSPR     L     +A+  G            G+ WL  EL+WR+F+R 
Sbjct: 238 RLSASLATGGLSPRQCLHRLLAEQPQALDGGP-----------GSVWLN-ELIWREFYRH 285

Query: 370 VTKKYSSAQK 341
           +   Y +  K
Sbjct: 286 LMTWYPALCK 295

>PHR_NEUCR (P27526) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 642

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 28/97 (28%), Positives = 43/97 (44%)
 Frame = -3

Query: 658 EALXRLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHA 479
           EAL RL+KF  E         K + + +I     +  +S   A+G LS R         A
Sbjct: 363 EALKRLEKFCDEAIG------KYAERRNIPAMQGTSNLSVHFASGTLSART--------A 408

Query: 478 IRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFV 368
           IR     +  K  +G ++    W+  E+ WRDF++ V
Sbjct: 409 IRTARDRNNTKKLNGGNEGIQRWIS-EVAWRDFYKHV 444

>PIP_SERMA (O32449) Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl|
           aminopeptidase) (PAP)
          Length = 317

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +1

Query: 109 DRYNNLFRDQIGPKCRNSLLGASLSGNIYWEKIHSIERLHELA 237
           +RY  L  DQ G  C  S   ASL  N  W  +  IERL E+A
Sbjct: 62  ERYKVLLFDQRG--CGRSRPHASLDNNTTWHLVADIERLREMA 102

>POF2_SCHPO (O74783) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat|
           protein 2) (F-box protein pof2)
          Length = 463

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +2

Query: 110 TDTTISSEIKLVQNAGTAYLGHHYQATFIGKKSTPLKGC 226
           TD+++ S  KL Q+  T +LGH Y+ T IG +   LK C
Sbjct: 291 TDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCL-LKSC 328

>EXTL2_MOUSE (Q9ES89) Exostosin-like 2 (EC 2.4.1.223)|
           (Glucuronyl-galactosyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase)
           (Alpha-1,4-N-acetylhexosaminyltransferase EXTL2)
           (Alpha-GalNAcT EXTL2) (EXT-related protein 2)
          Length = 330

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 435 PSPSLGVDPDGIALMACFFNSSYMKRGERQPVASHGEI 548
           P P  G     + + A FFNS Y++  ++QP A H  I
Sbjct: 201 PGPGNGDQYSMVLIGASFFNSKYLELFQKQPAAVHALI 238

>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 399 NCYGEISSGSSQRSTALHRRHPKLHRPLVAHL 304
           N YG +   S+ RS++L+R+HPK  R + + L
Sbjct: 107 NKYGHLDMFSTLRSSSLYRQHPKTLRSICSDL 138

>K502_ACTCH (P43394) Fruit protein PKIWI502|
          Length = 317

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +3

Query: 309 VQPVAGATSDVFCAELYFFVTNLKKSLHSNSNINQFVPASDVPSPSLGVDPDGIALMACF 488
           ++ V G TS+V C+     V +L + +    +I Q +P  D P+  + V   G++    F
Sbjct: 150 IRSVPGTTSEVLCSLKEGDVVDLTQIIGRGFDIEQILPPEDYPTVLISVTGYGMSAGRSF 209

Query: 489 FNSSY 503
               +
Sbjct: 210 IEEGF 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,634,200
Number of Sequences: 219361
Number of extensions: 2050459
Number of successful extensions: 5684
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5666
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)