ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17i11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 373 e-100
2gb|BT018292.1| Zea mays clone EL01T0205D06.c mRNA sequence 349 7e-93
3gb|AY107492.1| Zea mays PCO060628 mRNA sequence 347 3e-92
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 174 2e-40
5gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 174 2e-40
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
7gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome... 174 2e-40
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
10emb|AL772414.3|CNS08C9S Oryza sativa chromosome 12, . BAC OSJNBa... 62 2e-06
11ref|NM_130327.3| Arabidopsis thaliana PHR2 (PHOTOLYASE/BLUE-LIGH... 60 1e-05
12emb|BX819772.1|CNS0A8GH Arabidopsis thaliana Full-length cDNA Co... 60 1e-05
13gb|AY087383.1| Arabidopsis thaliana clone 34800 mRNA, complete s... 60 1e-05
14gb|AF053366.1|AF053366 Arabidopsis thaliana photolyase/blue ligh... 60 1e-05
15gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 ma... 56 2e-04
16gb|AC152937.21| Medicago truncatula clone mth2-96n6, complete se... 48 0.037
17emb|BX819264.1|CNS0A8SM Arabidopsis thaliana Full-length cDNA Co... 48 0.037
18gb|AC128239.4| Rattus norvegicus 4 BAC CH230-514E3 (Children's H... 46 0.15
19emb|AL136460.28| Human DNA sequence from clone RP11-102J14 on ch... 44 0.58
20gb|BT013885.1| Lycopersicon esculentum clone 132866F, mRNA sequence 42 2.3
21gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Canc... 42 2.3
22gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cance... 42 2.3
23gb|AC104013.4| Homo sapiens chromosome 8, clone RP11-281P4, comp... 42 2.3
24ref|NM_001031221.1| Gallus gallus coiled-coil domain containing ... 40 9.0
25gb|AC148875.2| Pan troglodytes BAC clone CH251-198I11 from Y, co... 40 9.0
26gb|AC148937.2| Pan troglodytes BAC clone CH251-485I7 from Y, com... 40 9.0
27gb|AC147127.2| Pan troglodytes BAC clone CH251-410H20 from Y, co... 40 9.0
28gb|AC148941.3| Pan troglodytes BAC clone CH251-41G22 from chromo... 40 9.0
29gb|AC007243.4| Homo sapiens BAC clone RP11-195L14 from 7, comple... 40 9.0
30emb|AJ851457.1| Gallus gallus mRNA for hypothetical protein, clo... 40 9.0
31emb|CR450804.7| Zebrafish DNA sequence from clone CH211-275D22 i... 40 9.0
32gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 9.0
33gb|AC148226.7| Medicago truncatula clone mth2-5i20, complete seq... 40 9.0
34gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, comp... 40 9.0
35gb|AC006479.2| Homo sapiens PAC clone RP5-1051J4 from 7, complet... 40 9.0
36gb|AC009048.6|AC009048 Homo sapiens chromosome 16 clone RP11-211... 40 9.0
37emb|BX511313.20| Mouse DNA sequence from clone RP24-391O14 on ch... 40 9.0
38gb|AC147334.4| Pan troglodytes BAC clone CH251-372D20 from chrom... 40 9.0
39gb|AC155319.2| Pan troglodytes BAC clone CH251-770A15 from chrom... 40 9.0
40gb|AC007216.2|AC007216 Homo sapiens chromosome 16 clone RP11-166... 40 9.0
41gb|U95742.1|HSU95742 Human chromosome 16p13.1 BAC clone CIT987SK... 40 9.0
42emb|BX005386.8| Zebrafish DNA sequence from clone DKEY-21M1 in l... 40 9.0
43emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 40 9.0
44gb|AC103352.8| Mus musculus chromosome 8, clone RP23-418G1, comp... 40 9.0
45gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, co... 40 9.0 
>dbj|AK105611.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B05, full
            insert sequence
          Length = 1800

 Score =  373 bits (188), Expect = e-100
 Identities = 316/359 (88%)
 Strand = Plus / Minus

                                                                        
Query: 300  ggggtaggtgtgcaaccagtggccggtgcaacttcggatgtcttctgtgcagagctgtac 359
            |||||||| |||||||||||||| || |||||||| || |||||||||||||| ||||||
Sbjct: 1393 ggggtaggggtgcaaccagtggcaggagcaacttcagaggtcttctgtgcagaactgtac 1334

                                                                        
Query: 360  ttctttgtgacgaacctgaagaaatctctccatagcaattcaaacattaaccaatttgtc 419
            |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 1333 ttctttgtgatgaacctgaagaaatctctccatagcaattcgaacattaaccaatttgta 1274

                                                                        
Query: 420  ccagcatctgatgttccgtcaccgtccttgggtgttgaccctgatggaattgctctaatg 479
            |||||||| ||||| || ||||| | |||||||||||| || ||||||||||||||    
Sbjct: 1273 ccagcatcagatgtgccatcaccattcttgggtgttgatcccgatggaattgctcttgaa 1214

                                                                        
Query: 480  gcatgcttcttcaactcctcatacatgaaacgtggagagagacaaccagtagcaagccat 539
            ||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct: 1213 gcatgcttcttcaactcctcatacatgaagcgcggtgagaggcaacctgtagcaagccat 1154

                                                                        
Query: 540  ggagaaattttgcaggagaaattagcaccatatatgctattctgggtactatctttgaca 599
            || |||||||||||||||||||||||||||||||||||||   | || || || ||| | 
Sbjct: 1153 ggtgaaattttgcaggagaaattagcaccatatatgctatctcgagtgctgtccttgtcc 1094

                                                                       
Query: 600  gctttgttcggctgcatacaacattctgcagcaaatttcttcagcctttncagggcttc 658
             ||||||| ||||||||||||||||||| |||||| ||||||| ||| | ||| |||||
Sbjct: 1093 cctttgtttggctgcatacaacattctgaagcaaacttcttcaacctctccagagcttc 1035



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/65 (92%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                        
Query: 105  tgtcgacagatacaaca--atctcttccgagatcaaattggtccaaaatgcaggaacagc 162
            ||||||||||||||| |  |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 1592 tgtcgacagatacaaaaggatctcttctgagatcaaattagtccaaaatgcaggaacagc 1533

                 
Query: 163  ttact 167
            |||||
Sbjct: 1532 ttact 1528
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>gb|BT018292.1| Zea mays clone EL01T0205D06.c mRNA sequence
          Length = 996

 Score =  349 bits (176), Expect = 7e-93
 Identities = 281/316 (88%)
 Strand = Plus / Minus

                                                                       
Query: 327 gcaacttcggatgtcttctgtgcagagctgtacttctttgtgacgaacctgaagaaatct 386
           |||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 675 gcaacttcagatgtcttctgtacagagctgtacttctttgtgatgaacctgaagaaatct 616

                                                                       
Query: 387 ctccatagcaattcaaacattaaccaatttgtcccagcatctgatgttccgtcaccgtcc 446
           ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||   | |
Sbjct: 615 ctccatagcaactcaaacattaaccaatttgtcccagcatcagatgtgccatcattattc 556

                                                                       
Query: 447 ttgggtgttgaccctgatggaattgctctaatggcatgcttcttcaactcctcatacatg 506
           |||||||||||||| || |||||||||||| | |||||||||||||||||||||||||||
Sbjct: 555 ttgggtgttgacccagaaggaattgctctagtagcatgcttcttcaactcctcatacatg 496

                                                                       
Query: 507 aaacgtggagagagacaaccagtagcaagccatggagaaattttgcaggagaaattagca 566
           || | |||||| || ||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 495 aaccttggagaaaggcaacctgtagcgagccatggagaaattttgcaggagaaatcagca 436

                                                                       
Query: 567 ccatatatgctattctgggtactatctttgacagctttgttcggctgcatacaacattct 626
           |||||||||||||  |||||| |   |||  | |||||||| ||||||||| | ||||||
Sbjct: 435 ccatatatgctatcttgggtattgcttttatctgctttgtttggctgcatagagcattct 376

                           
Query: 627 gcagcaaatttcttca 642
           |||||||| |||||||
Sbjct: 375 gcagcaaacttcttca 360
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>gb|AY107492.1| Zea mays PCO060628 mRNA sequence
          Length = 1028

 Score =  347 bits (175), Expect = 3e-92
 Identities = 294/334 (88%)
 Strand = Plus / Minus

                                                                       
Query: 327 gcaacttcggatgtcttctgtgcagagctgtacttctttgtgacgaacctgaagaaatct 386
           |||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 674 gcaacttcagatgtcttctgtacagagctgtacttctttgtgatgaacctgaagaaatct 615

                                                                       
Query: 387 ctccatagcaattcaaacattaaccaatttgtcccagcatctgatgttccgtcaccgtcc 446
           ||||| ||||| |||||||||||||||||||| |||||||| ||||| || |||   | |
Sbjct: 614 ctccacagcaactcaaacattaaccaatttgttccagcatcagatgtgccatcattattc 555

                                                                       
Query: 447 ttgggtgttgaccctgatggaattgctctaatggcatgcttcttcaactcctcatacatg 506
           ||||||||||||||  | ||||||||| || | |||||||||||||||||||||||||||
Sbjct: 554 ttgggtgttgacccaaaaggaattgctttagtagcatgcttcttcaactcctcatacatg 495

                                                                       
Query: 507 aaacgtggagagagacaaccagtagcaagccatggagaaattttgcaggagaaattagca 566
           || ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 494 aaccgtggagagaggcaacctgtagcaagccatggagaaattttgcaagagaaattagca 435

                                                                       
Query: 567 ccatatatgctattctgggtactatctttgacagctttgttcggctgcatacaacattct 626
           |||||||||||||  |||||| |   |||| |  ||||||| ||||||||| | ||||||
Sbjct: 434 ccatatatgctatcttgggtattgcttttgtctactttgtttggctgcatagagcattct 375

                                             
Query: 627 gcagcaaatttcttcagcctttncagggcttctg 660
           |||||||| ||||||| ||| | ||| |||||||
Sbjct: 374 gcagcaaacttcttcaacctctccagagcttctg 341
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  174 bits (88), Expect = 2e-40
 Identities = 156/179 (87%)
 Strand = Plus / Minus

                                                                            
Query: 480      gcatgcttcttcaactcctcatacatgaaacgtggagagagacaaccagtagcaagccat 539
                ||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct: 12771461 gcatgcttcttcaactcctcatacatgaagcgcggtgagaggcaacctgtagcaagccat 12771402

                                                                            
Query: 540      ggagaaattttgcaggagaaattagcaccatatatgctattctgggtactatctttgaca 599
                || |||||||||||||||||||||||||||||||||||||   | || || || ||| | 
Sbjct: 12771401 ggtgaaattttgcaggagaaattagcaccatatatgctatctcgagtgctgtccttgtcc 12771342

                                                                           
Query: 600      gctttgttcggctgcatacaacattctgcagcaaatttcttcagcctttncagggcttc 658
                 ||||||| ||||||||||||||||||| |||||| ||||||| ||| | ||| |||||
Sbjct: 12771341 cctttgtttggctgcatacaacattctgaagcaaacttcttcaacctctccagagcttc 12771283



 Score =  133 bits (67), Expect = 8e-28
 Identities = 94/103 (91%)
 Strand = Plus / Minus

                                                                            
Query: 373      acctgaagaaatctctccatagcaattcaaacattaaccaatttgtcccagcatctgatg 432
                |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 12771678 acctgaagaaatctctccatagcaattcgaacattaaccaatttgtaccagcatcagatg 12771619

                                                           
Query: 433      ttccgtcaccgtccttgggtgttgaccctgatggaattgctct 475
                | || ||||| | |||||||||||| || ||||||||||||||
Sbjct: 12771618 tgccatcaccattcttgggtgttgatcccgatggaattgctct 12771576



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                            
Query: 300      ggggtaggtgtgcaaccagtggccggtgcaacttcggatgtcttctgtgcagagctgtac 359
                |||||||| |||||||||||||| || |||||||| || |||||||||||||| ||||||
Sbjct: 12771998 ggggtaggggtgcaaccagtggcaggagcaacttcagaggtcttctgtgcagaactgtac 12771939

                                      
Query: 360      ttctttgtgacgaacctgaaga 381
                |||||||||| |||||| ||||
Sbjct: 12771938 ttctttgtgatgaacctaaaga 12771917



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/65 (92%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                            
Query: 105      tgtcgacagatacaaca--atctcttccgagatcaaattggtccaaaatgcaggaacagc 162
                ||||||||||||||| |  |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 12772197 tgtcgacagatacaaaaggatctcttctgagatcaaattagtccaaaatgcaggaacagc 12772138

                     
Query: 163      ttact 167
                |||||
Sbjct: 12772137 ttact 12772133
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
            complete sequence
          Length = 132243

 Score =  174 bits (88), Expect = 2e-40
 Identities = 156/179 (87%)
 Strand = Plus / Minus

                                                                        
Query: 480  gcatgcttcttcaactcctcatacatgaaacgtggagagagacaaccagtagcaagccat 539
            ||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct: 9677 gcatgcttcttcaactcctcatacatgaagcgcggtgagaggcaacctgtagcaagccat 9618

                                                                        
Query: 540  ggagaaattttgcaggagaaattagcaccatatatgctattctgggtactatctttgaca 599
            || |||||||||||||||||||||||||||||||||||||   | || || || ||| | 
Sbjct: 9617 ggtgaaattttgcaggagaaattagcaccatatatgctatctcgagtgctgtccttgtcc 9558

                                                                       
Query: 600  gctttgttcggctgcatacaacattctgcagcaaatttcttcagcctttncagggcttc 658
             ||||||| ||||||||||||||||||| |||||| ||||||| ||| | ||| |||||
Sbjct: 9557 cctttgtttggctgcatacaacattctgaagcaaacttcttcaacctctccagagcttc 9499



 Score =  133 bits (67), Expect = 8e-28
 Identities = 94/103 (91%)
 Strand = Plus / Minus

                                                                        
Query: 373  acctgaagaaatctctccatagcaattcaaacattaaccaatttgtcccagcatctgatg 432
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 9894 acctgaagaaatctctccatagcaattcgaacattaaccaatttgtaccagcatcagatg 9835

                                                       
Query: 433  ttccgtcaccgtccttgggtgttgaccctgatggaattgctct 475
            | || ||||| | |||||||||||| || ||||||||||||||
Sbjct: 9834 tgccatcaccattcttgggtgttgatcccgatggaattgctct 9792



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                         
Query: 300   ggggtaggtgtgcaaccagtggccggtgcaacttcggatgtcttctgtgcagagctgtac 359
             |||||||| |||||||||||||| || |||||||| || |||||||||||||| ||||||
Sbjct: 10214 ggggtaggggtgcaaccagtggcaggagcaacttcagaggtcttctgtgcagaactgtac 10155

                                   
Query: 360   ttctttgtgacgaacctgaaga 381
             |||||||||| |||||| ||||
Sbjct: 10154 ttctttgtgatgaacctaaaga 10133



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/65 (92%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                         
Query: 105   tgtcgacagatacaaca--atctcttccgagatcaaattggtccaaaatgcaggaacagc 162
             ||||||||||||||| |  |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 10413 tgtcgacagatacaaaaggatctcttctgagatcaaattagtccaaaatgcaggaacagc 10354

                  
Query: 163   ttact 167
             |||||
Sbjct: 10353 ttact 10349
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  174 bits (88), Expect = 2e-40
 Identities = 156/179 (87%)
 Strand = Plus / Minus

                                                                            
Query: 480      gcatgcttcttcaactcctcatacatgaaacgtggagagagacaaccagtagcaagccat 539
                ||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct: 12768224 gcatgcttcttcaactcctcatacatgaagcgcggtgagaggcaacctgtagcaagccat 12768165

                                                                            
Query: 540      ggagaaattttgcaggagaaattagcaccatatatgctattctgggtactatctttgaca 599
                || |||||||||||||||||||||||||||||||||||||   | || || || ||| | 
Sbjct: 12768164 ggtgaaattttgcaggagaaattagcaccatatatgctatctcgagtgctgtccttgtcc 12768105

                                                                           
Query: 600      gctttgttcggctgcatacaacattctgcagcaaatttcttcagcctttncagggcttc 658
                 ||||||| ||||||||||||||||||| |||||| ||||||| ||| | ||| |||||
Sbjct: 12768104 cctttgtttggctgcatacaacattctgaagcaaacttcttcaacctctccagagcttc 12768046



 Score =  133 bits (67), Expect = 8e-28
 Identities = 94/103 (91%)
 Strand = Plus / Minus

                                                                            
Query: 373      acctgaagaaatctctccatagcaattcaaacattaaccaatttgtcccagcatctgatg 432
                |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 12768441 acctgaagaaatctctccatagcaattcgaacattaaccaatttgtaccagcatcagatg 12768382

                                                           
Query: 433      ttccgtcaccgtccttgggtgttgaccctgatggaattgctct 475
                | || ||||| | |||||||||||| || ||||||||||||||
Sbjct: 12768381 tgccatcaccattcttgggtgttgatcccgatggaattgctct 12768339



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                            
Query: 300      ggggtaggtgtgcaaccagtggccggtgcaacttcggatgtcttctgtgcagagctgtac 359
                |||||||| |||||||||||||| || |||||||| || |||||||||||||| ||||||
Sbjct: 12768761 ggggtaggggtgcaaccagtggcaggagcaacttcagaggtcttctgtgcagaactgtac 12768702

                                      
Query: 360      ttctttgtgacgaacctgaaga 381
                |||||||||| |||||| ||||
Sbjct: 12768701 ttctttgtgatgaacctaaaga 12768680



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/65 (92%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                            
Query: 105      tgtcgacagatacaaca--atctcttccgagatcaaattggtccaaaatgcaggaacagc 162
                ||||||||||||||| |  |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 12768960 tgtcgacagatacaaaaggatctcttctgagatcaaattagtccaaaatgcaggaacagc 12768901

                     
Query: 163      ttact 167
                |||||
Sbjct: 12768900 ttact 12768896
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>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050D18,
              complete sequence
          Length = 126350

 Score =  174 bits (88), Expect = 2e-40
 Identities = 156/179 (87%)
 Strand = Plus / Minus

                                                                          
Query: 480    gcatgcttcttcaactcctcatacatgaaacgtggagagagacaaccagtagcaagccat 539
              ||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct: 125914 gcatgcttcttcaactcctcatacatgaagcgcggtgagaggcaacctgtagcaagccat 125855

                                                                          
Query: 540    ggagaaattttgcaggagaaattagcaccatatatgctattctgggtactatctttgaca 599
              || |||||||||||||||||||||||||||||||||||||   | || || || ||| | 
Sbjct: 125854 ggtgaaattttgcaggagaaattagcaccatatatgctatctcgagtgctgtccttgtcc 125795

                                                                         
Query: 600    gctttgttcggctgcatacaacattctgcagcaaatttcttcagcctttncagggcttc 658
               ||||||| ||||||||||||||||||| |||||| ||||||| ||| | ||| |||||
Sbjct: 125794 cctttgtttggctgcatacaacattctgaagcaaacttcttcaacctctccagagcttc 125736



 Score =  133 bits (67), Expect = 8e-28
 Identities = 94/103 (91%)
 Strand = Plus / Minus

                                                                          
Query: 373    acctgaagaaatctctccatagcaattcaaacattaaccaatttgtcccagcatctgatg 432
              |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 126131 acctgaagaaatctctccatagcaattcgaacattaaccaatttgtaccagcatcagatg 126072

                                                         
Query: 433    ttccgtcaccgtccttgggtgttgaccctgatggaattgctct 475
              | || ||||| | |||||||||||| || ||||||||||||||
Sbjct: 126071 tgccatcaccattcttgggtgttgatcccgatggaattgctct 126029
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 378      aagaaatctctccatagcaattcaaacattaaccaattt 416
                ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 14524943 aagaaatctctccatagcaattcgaacattaatcaattt 14524905
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 378      aagaaatctctccatagcaattcaaacattaaccaattt 416
                ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 14479227 aagaaatctctccatagcaattcgaacattaatcaattt 14479189
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>emb|AL772414.3|CNS08C9S Oryza sativa chromosome 12, . BAC OSJNBa0040E18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158261

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                     
Query: 378    aagaaatctctccatagcaattcaaacattaaccaattt 416
              ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 136350 aagaaatctctccatagcaattcgaacattaatcaattt 136388
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>ref|NM_130327.3| Arabidopsis thaliana PHR2 (PHOTOLYASE/BLUE-LIGHT RECEPTOR 2)
            AT2G47590 (PHR2) mRNA, complete cds
          Length = 1766

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 351  gagctgtacttctttgtgacgaacctgaagaaatctctccatagcaattcaaacattaac 410
            |||||||| ||||| || |  |||||||||||||| ||||||||||| ||| ||||||||
Sbjct: 1377 gagctgtatttcttggttataaacctgaagaaatccctccatagcaactcatacattaac 1318

              
Query: 411  ca 412
            ||
Sbjct: 1317 ca 1316
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>emb|BX819772.1|CNS0A8GH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS25ZD12 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1467

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 351  gagctgtacttctttgtgacgaacctgaagaaatctctccatagcaattcaaacattaac 410
            |||||||| ||||| || |  |||||||||||||| ||||||||||| ||| ||||||||
Sbjct: 1276 gagctgtatttcttggttataaacctgaagaaatccctccatagcaactcatacattaac 1217

              
Query: 411  ca 412
            ||
Sbjct: 1216 ca 1215
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>gb|AY087383.1| Arabidopsis thaliana clone 34800 mRNA, complete sequence
          Length = 1631

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 351  gagctgtacttctttgtgacgaacctgaagaaatctctccatagcaattcaaacattaac 410
            |||||||| ||||| || |  |||||||||||||| ||||||||||| ||| ||||||||
Sbjct: 1303 gagctgtatttcttggttataaacctgaagaaatccctccatagcaactcatacattaac 1244

              
Query: 411  ca 412
            ||
Sbjct: 1243 ca 1242
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>gb|AF053366.1|AF053366 Arabidopsis thaliana photolyase/blue light photoreceptor PHR2 (PHR2)
            mRNA, complete cds
          Length = 1431

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 351  gagctgtacttctttgtgacgaacctgaagaaatctctccatagcaattcaaacattaac 410
            |||||||| ||||| || |  |||||||||||||| ||||||||||| ||| ||||||||
Sbjct: 1355 gagctgtatttcttggttataaacctgaagaaatccctccatagcaactcatacattaac 1296

              
Query: 411  ca 412
            ||
Sbjct: 1295 ca 1294
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>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
             sequence
          Length = 98937

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 373   acctgaagaaatctctccatagcaattcaaacattaacca 412
             ||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 25083 acctgaagaaatccctccatagcaactcatacattaacca 25122
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>gb|AC152937.21| Medicago truncatula clone mth2-96n6, complete sequence
          Length = 108802

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 536   ccatggagaaattttgcaggagaaattagcaccatatatgctat 579
             |||||||||||||||||| || || || ||||||||||| ||||
Sbjct: 11513 ccatggagaaattttgcatgaaaagttggcaccatatatactat 11470



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 373   acctgaagaaatctctccatagcaattcaaacattaaccaatt 415
             |||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct: 11755 acctaaagaagtccctccatagcaactcaaacatcaaccaatt 11713
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>emb|BX819264.1|CNS0A8SM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB61ZF06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1537

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 377  gaagaaatctctccatagcaattcaaacattaacca 412
            ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 1265 gaagaaatccctccatagcaactcatacattaacca 1230
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>gb|AC128239.4| Rattus norvegicus 4 BAC CH230-514E3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 187607

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 249    cagcagcagactctctgcttggc 271
              |||||||||||||||||||||||
Sbjct: 107870 cagcagcagactctctgcttggc 107892
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>emb|AL136460.28| Human DNA sequence from clone RP11-102J14 on chromosome 20 Contains a
             novel gene and the PA2G4P2 gene for
             proliferation-associated 2G4 pseudogene 2, complete
             sequence
          Length = 139030

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 535   gccatggagaaattttgcagga 556
             ||||||||||||||||||||||
Sbjct: 88984 gccatggagaaattttgcagga 88963
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>gb|BT013885.1| Lycopersicon esculentum clone 132866F, mRNA sequence
          Length = 1649

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                        
Query: 485  cttcttcaactcctcatacatgaaacgtggagagagacaaccagtagcaagccatggaga 544
            ||||||||| || ||| ||||| |||| || |||||||| ||  |||| | ||| || ||
Sbjct: 1322 cttcttcaattcatcaaacatggaacggggtgagagacatcccatagctaaccaaggcga 1263

                                             
Query: 545  aattttgcaggagaaattagcaccatatatgct 577
             |||||||| || || || ||||||||||||||
Sbjct: 1262 tattttgcaagaaaagtttgcaccatatatgct 1230
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>gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214578

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 508    aacgtggagagagacaaccag 528
              |||||||||||||||||||||
Sbjct: 179541 aacgtggagagagacaaccag 179521
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>gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 250218

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 508    aacgtggagagagacaaccag 528
              |||||||||||||||||||||
Sbjct: 108224 aacgtggagagagacaaccag 108204
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>gb|AC104013.4| Homo sapiens chromosome 8, clone RP11-281P4, complete sequence
          Length = 158405

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    ggaagaaagtgaagaaagcat 67
             |||||||||||||||||||||
Sbjct: 51443 ggaagaaagtgaagaaagcat 51423
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>ref|NM_001031221.1| Gallus gallus coiled-coil domain containing 6 (CCDC6), mRNA
          Length = 4004

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 545 aattttgcaggagaaattag 564
           ||||||||||||||||||||
Sbjct: 762 aattttgcaggagaaattag 781
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>gb|AC148875.2| Pan troglodytes BAC clone CH251-198I11 from Y, complete sequence
          Length = 182437

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gaagaaagcatctaggattt 76
             ||||||||||||||||||||
Sbjct: 64636 gaagaaagcatctaggattt 64655



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    gaagaaagcatctaggattt 76
             ||||||||||||||||||||
Sbjct: 33123 gaagaaagcatctaggattt 33104
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>gb|AC148937.2| Pan troglodytes BAC clone CH251-485I7 from Y, complete sequence
          Length = 184818

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     gaagaaagcatctaggattt 76
              ||||||||||||||||||||
Sbjct: 104714 gaagaaagcatctaggattt 104733



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    gaagaaagcatctaggattt 76
             ||||||||||||||||||||
Sbjct: 73171 gaagaaagcatctaggattt 73152
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>gb|AC147127.2| Pan troglodytes BAC clone CH251-410H20 from Y, complete sequence
          Length = 169143

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gaagaaagcatctaggattt 76
             ||||||||||||||||||||
Sbjct: 37082 gaagaaagcatctaggattt 37101



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   gaagaaagcatctaggattt 76
            ||||||||||||||||||||
Sbjct: 5539 gaagaaagcatctaggattt 5520
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>gb|AC148941.3| Pan troglodytes BAC clone CH251-41G22 from chromosome y, complete
              sequence
          Length = 243842

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     gaagaaagcatctaggattt 76
              ||||||||||||||||||||
Sbjct: 201711 gaagaaagcatctaggattt 201730



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     gaagaaagcatctaggattt 76
              ||||||||||||||||||||
Sbjct: 170198 gaagaaagcatctaggattt 170179
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>gb|AC007243.4| Homo sapiens BAC clone RP11-195L14 from 7, complete sequence
          Length = 126391

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   attatcaggcaacatttatt 196
             ||||||||||||||||||||
Sbjct: 48380 attatcaggcaacatttatt 48399
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>emb|AJ851457.1| Gallus gallus mRNA for hypothetical protein, clone 3i14
          Length = 4004

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 545 aattttgcaggagaaattag 564
           ||||||||||||||||||||
Sbjct: 762 aattttgcaggagaaattag 781
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>emb|CR450804.7| Zebrafish DNA sequence from clone CH211-275D22 in linkage group 8,
             complete sequence
          Length = 91038

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    gaaagcatctaggatttttt 79
             ||||||||||||||||||||
Sbjct: 33098 gaaagcatctaggatttttt 33117
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      gaagaaagcatctaggattt 76
               ||||||||||||||||||||
Sbjct: 9413655 gaagaaagcatctaggattt 9413674



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      gaagaaagcatctaggattt 76
               ||||||||||||||||||||
Sbjct: 9382142 gaagaaagcatctaggattt 9382123



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      gaagaaagcatctaggattt 76
               ||||||||||||||||||||
Sbjct: 8681050 gaagaaagcatctaggattt 8681069



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      gaagaaagcatctaggattt 76
               ||||||||||||||||||||
Sbjct: 8649538 gaagaaagcatctaggattt 8649519



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      gaagaaagcatctaggattt 76
               ||||||||||||||||||||
Sbjct: 7945161 gaagaaagcatctaggattt 7945180



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      gaagaaagcatctaggattt 76
               ||||||||||||||||||||
Sbjct: 7913618 gaagaaagcatctaggattt 7913599
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>gb|AC148226.7| Medicago truncatula clone mth2-5i20, complete sequence
          Length = 84259

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   ttcaaacattaaccaatttg 417
             ||||||||||||||||||||
Sbjct: 79621 ttcaaacattaaccaatttg 79602
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>gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, complete sequence
          Length = 179513

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  gcaacatttattgggaaaaa 204
            ||||||||||||||||||||
Sbjct: 3491 gcaacatttattgggaaaaa 3472
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>gb|AC006479.2| Homo sapiens PAC clone RP5-1051J4 from 7, complete sequence
          Length = 161837

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   ttgggaaaaaatccactccattga 218
             ||||||||||||||||||| ||||
Sbjct: 35635 ttgggaaaaaatccactcctttga 35612
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>gb|AC009048.6|AC009048 Homo sapiens chromosome 16 clone RP11-211H13, complete sequence
          Length = 163844

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ggaaaaaatccactccattg 217
             ||||||||||||||||||||
Sbjct: 13523 ggaaaaaatccactccattg 13504
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>emb|BX511313.20| Mouse DNA sequence from clone RP24-391O14 on chromosome X, complete
             sequence
          Length = 178972

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   aatggcatgcttcttcaact 495
             ||||||||||||||||||||
Sbjct: 25874 aatggcatgcttcttcaact 25893
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>gb|AC147334.4| Pan troglodytes BAC clone CH251-372D20 from chromosome y, complete
              sequence
          Length = 211310

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     gaagaaagcatctaggattt 76
              ||||||||||||||||||||
Sbjct: 200674 gaagaaagcatctaggattt 200693



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     gaagaaagcatctaggattt 76
              ||||||||||||||||||||
Sbjct: 169162 gaagaaagcatctaggattt 169143
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>gb|AC155319.2| Pan troglodytes BAC clone CH251-770A15 from chromosome y, complete
            sequence
          Length = 185385

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   gaagaaagcatctaggattt 76
            ||||||||||||||||||||
Sbjct: 2859 gaagaaagcatctaggattt 2878
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>gb|AC007216.2|AC007216 Homo sapiens chromosome 16 clone RP11-166B2, complete sequence
          Length = 172827

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    ggaaaaaatccactccattg 217
              ||||||||||||||||||||
Sbjct: 108861 ggaaaaaatccactccattg 108842
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>gb|U95742.1|HSU95742 Human chromosome 16p13.1 BAC clone CIT987SK-551G9 complete sequence
          Length = 139376

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ggaaaaaatccactccattg 217
             ||||||||||||||||||||
Sbjct: 78456 ggaaaaaatccactccattg 78437
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>emb|BX005386.8| Zebrafish DNA sequence from clone DKEY-21M1 in linkage group 1,
             complete sequence
          Length = 170040

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   gcaattcaaacattaaccaa 413
             ||||||||||||||||||||
Sbjct: 86553 gcaattcaaacattaaccaa 86534
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>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 22      tctattatttctattatatt 41
               ||||||||||||||||||||
Sbjct: 1114846 tctattatttctattatatt 1114827
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>gb|AC103352.8| Mus musculus chromosome 8, clone RP23-418G1, complete sequence
          Length = 207330

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    tctctccatagcaattcaaa 403
              ||||||||||||||||||||
Sbjct: 173594 tctctccatagcaattcaaa 173613
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>gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, complete sequence
          Length = 214994

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   tctctccatagcaattcaaa 403
             ||||||||||||||||||||
Sbjct: 67144 tctctccatagcaattcaaa 67163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,443,090
Number of Sequences: 3902068
Number of extensions: 6443090
Number of successful extensions: 133083
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132769
Number of HSP's gapped (non-prelim): 306
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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