>ref|XM_417003.1| PREDICTED: Gallus gallus similar to highwire; PAM; rpm 1
           (LOC418808), mRNA
          Length = 16077

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 271 aggtggctcgttggattcctcttcttcatca 301
           ||||||||| |||||||||||||||||||||
Sbjct: 900 aggtggctctttggattcctcttcttcatca 870

>emb|CR353672.1| Gallus gallus finished cDNA, clone ChEST231o13
          Length = 1096

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 271 aggtggctcgttggattcctcttcttcatca 301
           ||||||||| |||||||||||||||||||||
Sbjct: 568 aggtggctctttggattcctcttcttcatca 538

>ref|NM_015057.2| Homo sapiens MYC binding protein 2 (MYCBP2), mRNA
          Length = 14734

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 275 ggctcgttggattcctcttcttcatca 301
           ||||| |||||||||||||||||||||
Sbjct: 552 ggctctttggattcctcttcttcatca 526

>emb|AL159158.12| Human DNA sequence from clone RP11-81G4 on chromosome 13 Contains the
             5' end of a novel gene (KIAA0916) and two CpG islands,
             complete sequence
          Length = 154682

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 275   ggctcgttggattcctcttcttcatca 301
             ||||| |||||||||||||||||||||
Sbjct: 15043 ggctctttggattcctcttcttcatca 15069

>gb|AF075587.1|AF075587 Homo sapiens protein associated with Myc mRNA, complete cds
          Length = 14807

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 275 ggctcgttggattcctcttcttcatca 301
           ||||| |||||||||||||||||||||
Sbjct: 607 ggctctttggattcctcttcttcatca 581

>gb|AY579201.1| Tetrahymena thermophila DNA topoisomerase type 2 (TOP2A) mRNA,
            complete cds
          Length = 4430

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 286  ttcctcttcttcatcagattca 307
            ||||||||||||||||||||||
Sbjct: 4222 ttcctcttcttcatcagattca 4201

>ref|XM_809076.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein
            (Tc00.1047053511215.119) partial mRNA
          Length = 1803

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 337  cttcacctcctcaaatcgctcc 358
            ||||||||||||||||||||||
Sbjct: 1089 cttcacctcctcaaatcgctcc 1068

>ref|XM_797553.1| Trypanosoma cruzi strain CL Brener paraxonemal rod protein PAR2
           (Tc00.1047053434931.10) partial mRNA
          Length = 795

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 337 cttcacctcctcaaatcgctcc 358
           ||||||||||||||||||||||
Sbjct: 81  cttcacctcctcaaatcgctcc 60

>ref|XM_802852.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein
           (Tc00.1047053508961.79) partial mRNA
          Length = 1080

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 337 cttcacctcctcaaatcgctcc 358
           ||||||||||||||||||||||
Sbjct: 366 cttcacctcctcaaatcgctcc 345

>gb|M97548.1|TRBPAR2A Trypanosoma cruzi major paraflagellar rod protein (PAR2) mRNA,
            complete cds
          Length = 2057

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 337  cttcacctcctcaaatcgctcc 358
            ||||||||||||||||||||||
Sbjct: 1137 cttcacctcctcaaatcgctcc 1116

>gb|AC136523.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0018C06,
             complete sequence
          Length = 179695

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   ttggattcctcttcttcatca 301
             |||||||||||||||||||||
Sbjct: 27655 ttggattcctcttcttcatca 27675

>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence
          Length = 114031

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 284  gattcctcttcttcatcagat 304
            |||||||||||||||||||||
Sbjct: 8255 gattcctcttcttcatcagat 8275

>gb|AC019205.4| Homo sapiens BAC clone RP11-398K22 from 6, complete sequence
          Length = 198052

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    ggtaactaatcagaggcagaa 87
             |||||||||||||||||||||
Sbjct: 95865 ggtaactaatcagaggcagaa 95885

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 281     ttggattcctcttcttcatca 301
               |||||||||||||||||||||
Sbjct: 7050851 ttggattcctcttcttcatca 7050831

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 281      ttggattcctcttcttcatca 301
                |||||||||||||||||||||
Sbjct: 11944841 ttggattcctcttcttcatca 11944861

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 287      tcctcttcttcatcagattca 307
                |||||||||||||||||||||
Sbjct: 17929939 tcctcttcttcatcagattca 17929919

>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0520B06
          Length = 142667

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 287   tcctcttcttcatcagattca 307
             |||||||||||||||||||||
Sbjct: 49774 tcctcttcttcatcagattca 49754

>dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1165C09
          Length = 202985

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    ttggattcctcttcttcatca 301
              |||||||||||||||||||||
Sbjct: 168899 ttggattcctcttcttcatca 168879

>dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0674B07
          Length = 192191

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 281   ttggattcctcttcttcatca 301
             |||||||||||||||||||||
Sbjct: 96337 ttggattcctcttcttcatca 96317

>gb|U91900.1|DBU91900 Dunaliella bardawil phytoene synthase mRNA, complete cds
          Length = 1278

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 328 gatgcatgccttcacctcctc 348
           |||||||||||||||||||||
Sbjct: 984 gatgcatgccttcacctcctc 964

>gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, complete sequence
          Length = 198815

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     acacatacctgtgcttaata 22
             ||||||||||||||||||||
Sbjct: 62708 acacatacctgtgcttaata 62727

>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     gtgaggccggcggcctggaa 327
               ||||||||||||||||||||
Sbjct: 2138822 gtgaggccggcggcctggaa 2138803

>ref|NM_001031001.1| Gallus gallus serpin peptidase inhibitor, clade B (ovalbumin), member
            3 (SERPINB3), mRNA
          Length = 1972

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  attcctcttcttcatcagat 304
            ||||||||||||||||||||
Sbjct: 1162 attcctcttcttcatcagat 1181

>gb|DQ465931.1| Fusarium oxysporum isolate SAT75 translation elongation factor 1a
           gene, partial sequence
          Length = 686

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 169 ccagagtcgacttggccgat 188
           ||||||||||||||||||||
Sbjct: 48  ccagagtcgacttggccgat 29

>gb|AC121917.2| Mus musculus BAC clone RP24-194F23 from 5, complete sequence
          Length = 178113

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    taataataaactgcacagta 37
             ||||||||||||||||||||
Sbjct: 77669 taataataaactgcacagta 77688

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     gccggcggcctggaagatgc 332
               ||||||||||||||||||||
Sbjct: 3489405 gccggcggcctggaagatgc 3489386

>gb|J00922.1|CHKY Gallus gallus ovalbumin (oval-Y) gene, complete cds
          Length = 8372

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  attcctcttcttcatcagat 304
            ||||||||||||||||||||
Sbjct: 7457 attcctcttcttcatcagat 7476

>gb|AC105383.3| Homo sapiens BAC clone RP11-9G1 from 4, complete sequence
          Length = 173956

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   attttcattgctctctcact 206
             ||||||||||||||||||||
Sbjct: 96917 attttcattgctctctcact 96898

>gb|AC164661.3| Pan troglodytes BAC clone CH251-11F8 from chromosome unknown, complete
             sequence
          Length = 184521

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    gtaactaatcagaggcagaa 87
             ||||||||||||||||||||
Sbjct: 87780 gtaactaatcagaggcagaa 87761

>gb|AC164107.3| Mus musculus BAC clone RP23-461D6 from chromosome 14, complete sequence
          Length = 181095

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 140   agcagccacagataatgcgaacct 163
             ||||||||||||||||| ||||||
Sbjct: 23334 agcagccacagataatgagaacct 23311

>gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromosome unknown, complete
              sequence
          Length = 207137

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    attcctcttcttcatcagat 304
              ||||||||||||||||||||
Sbjct: 177383 attcctcttcttcatcagat 177402

>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown, complete
             sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   attcctcttcttcatcagat 304
             ||||||||||||||||||||
Sbjct: 54146 attcctcttcttcatcagat 54165


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,201,953
Number of Sequences: 3902068
Number of extensions: 3201953
Number of successful extensions: 62195
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62077
Number of HSP's gapped (non-prelim): 118
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)