ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6n15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 73 5e-13
2PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.... 67 2e-11
3PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (... 62 1e-09
4WDR17_HUMAN (Q8IZU2) WD-repeat protein 17 31 1.6
5DPOLA_RAT (O89042) DNA polymerase alpha catalytic subunit (EC 2.... 30 2.7
6CBPA_CLOCL (P38058) Cellulose-binding protein A precursor 30 3.5
7V70K_EPMV (P20129) 70 kDa protein 30 3.5
8DPOLA_MOUSE (P33609) DNA polymerase alpha catalytic subunit (EC ... 29 5.9

>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 37/68 (54%), Positives = 43/68 (63%)
 Frame = -2

Query: 487 VYITIGDGGNREGLASKFIKDHKSAPLSLFREASFGHGRLRIVNXTTAVWRWHRNDDKFA 308
           +YITIGDGGN EGL +  ++       S FREASFGHG L I N T A + W+RN D  A
Sbjct: 388 IYITIGDGGNSEGLLTDMMQPQPK--YSAFREASFGHGLLEIKNRTHAYFSWNRNQDGNA 445

Query: 307 TVADEVWL 284
             AD VWL
Sbjct: 446 VAADSVWL 453



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>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)|
           (Manganese(II) purple acid phosphatase)
          Length = 464

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 35/67 (52%), Positives = 39/67 (58%)
 Frame = -2

Query: 487 VYITIGDGGNREGLASKFIKDHKSAPLSLFREASFGHGRLRIVNXTTAVWRWHRNDDKFA 308
           VYITIGDGG  EGLA+   +       S FREASFGH    I N T A + WHRN D  A
Sbjct: 382 VYITIGDGGTLEGLATNMTEPQPK--YSAFREASFGHAIFDITNRTHAHYSWHRNQDGVA 439

Query: 307 TVADEVW 287
             AD +W
Sbjct: 440 VEADSLW 446



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>PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (EC 3.1.3.2)|
           (PAP)
          Length = 432

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 34/67 (50%), Positives = 38/67 (56%)
 Frame = -2

Query: 487 VYITIGDGGNREGLASKFIKDHKSAPLSLFREASFGHGRLRIVNXTTAVWRWHRNDDKFA 308
           VYITIGD GN   + S  I+       S FREASFGHG   I N T A + W+RN D  A
Sbjct: 355 VYITIGDAGNYGVIDSNMIQPQPE--YSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVA 412

Query: 307 TVADEVW 287
             AD VW
Sbjct: 413 VEADSVW 419



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>WDR17_HUMAN (Q8IZU2) WD-repeat protein 17|
          Length = 1322

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 209 RVVAPCNSSVQRPA-LGWCLWSSQALQPDLVGHGGELVVVTVPPPDGGCLVY 361
           +V+A  +S+   PA L WC W+++ +    V H G L + T+  PD G +V+
Sbjct: 117 KVIAKLDSTKGIPASLSWC-WNAEDVVA-FVSHRGPLFIWTISGPDSGVIVH 166



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>DPOLA_RAT (O89042) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
           (Fragment)
          Length = 1451

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +2

Query: 209 RVVAPCNSSVQRPAL-----GWCLWSSQALQPDLVGHGGELVVVTVPPP 340
           ++  PC   V+ P L      WC + + AL+PDLV      V+  V PP
Sbjct: 499 KIKGPCWLEVKNPQLLNQPISWCKFEAMALKPDLVN-----VIKDVSPP 542



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>CBPA_CLOCL (P38058) Cellulose-binding protein A precursor|
          Length = 1848

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 269 SSQALQPDLVGH-GGELVVVTVPPPDGGCLVYNPQSPVSEARLTEQGKRRRLVILDEFGS 445
           S+  + P + G+ GG  V+ T P PD    + NP S   +  +T+Q   +  + L+    
Sbjct: 167 STPVVNPKVTGYIGGAKVLGTAPGPDVPSSIINPTSATFDKNVTKQADVKTTMTLN---G 223

Query: 446 KAFPVATIADG 478
             F   T A+G
Sbjct: 224 NTFKTITDANG 234



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>V70K_EPMV (P20129) 70 kDa protein|
          Length = 649

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -1

Query: 278 LGYSKDTNPAPVVAQMSCRVPPLDPRWLNCNLSELDGSLLSLPNN*KKSPCVPTEEKITH 99
           LG+SK    +   A + C+ PP  P  L          LL LP    K+P  PT   ++ 
Sbjct: 364 LGHSKRVGQS---ADLVCQCPPPPPSML---------PLLLLPRGKVKAPLRPTLASLSF 411

Query: 98  ALNAIYFHMTS 66
             + I +H+TS
Sbjct: 412 GSHPIPYHVTS 422



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>DPOLA_MOUSE (P33609) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1465

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +2

Query: 209 RVVAPCNSSVQRPAL-----GWCLWSSQALQPDLVGHGGELVVVTVPPP 340
           ++  PC   V+ P L      WC +   AL+PDLV      V+  V PP
Sbjct: 496 KIKGPCWLEVKNPQLLNQPISWCKFEVMALKPDLVN-----VIKDVSPP 539


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,107,427
Number of Sequences: 219361
Number of extensions: 1403679
Number of successful extensions: 3932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3929
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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