ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17g15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF043086.1|AF043086 Hordeum vulgare dehydrin 11 (dhn11) gene, complete cds Length = 2420 Score = 117 bits (59), Expect = 4e-23 Identities = 87/95 (91%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 152 ggagattttcccctaatttatgtaattagttttaacactccccctaatctacgcttgacc 211 |||||||||||||||||| | ||||||||||||||||| |||||||||||| ||||||| Sbjct: 94 ggagattttcccctaatt-acataattagttttaacacttcccctaatctacacttgacc 36 Query: 212 atgtggagtcgtcttcatgattgtccgggaagctt 246 ||||||||| ||||||||||||||| |||||||| Sbjct: 35 atgtggagttatcttcatgattgtccaggaagctt 1
>gb|AF181461.1|AF181461 Hordeum vulgare dehydrin (Dhn11) gene, complete cds Length = 2009 Score = 107 bits (54), Expect = 4e-20 Identities = 79/86 (91%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 152 ggagattttcccctaatttatgtaattagttttaacactccccctaatctacgcttgacc 211 |||||||||||||||||| | ||||||||||||||||| |||||||||||| ||||||| Sbjct: 85 ggagattttcccctaatt-acataattagttttaacacttcccctaatctacacttgacc 27 Query: 212 atgtggagtcgtcttcatgattgtcc 237 ||||||||| ||||||||||||||| Sbjct: 26 atgtggagttatcttcatgattgtcc 1
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 537 gtttaggagaaatatgcttagtgatattgctcttgatata 576 ||||||||| ||||||||||||||| |||||||| ||||| Sbjct: 11161897 gtttaggagcaatatgcttagtgatgttgctcttaatata 11161936 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 20492724 tttaggagcaatatgcttagtgatgttgctcttaatata 20492762 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 9455729 tttaggagcaatatgcttagtgatgttgctcttaatata 9455691 Score = 44.1 bits (22), Expect = 0.53 Identities = 46/54 (85%) Strand = Plus / Plus Query: 428 gaatgttgagtttggtaaagacttagtaaacaaatcagcaaggttgtcacatga 481 |||||| |||| ||||| ||| || || || |||||||||||||| |||||||| Sbjct: 11161787 gaatgtggagtatggtagagattttgtgaataaatcagcaaggttatcacatga 11161840
>dbj|AP004398.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0438G07 Length = 138878 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 537 gtttaggagaaatatgcttagtgatattgctcttgatata 576 ||||||||| ||||||||||||||| |||||||| ||||| Sbjct: 1873 gtttaggagcaatatgcttagtgatgttgctcttaatata 1912 Score = 44.1 bits (22), Expect = 0.53 Identities = 46/54 (85%) Strand = Plus / Plus Query: 428 gaatgttgagtttggtaaagacttagtaaacaaatcagcaaggttgtcacatga 481 |||||| |||| ||||| ||| || || || |||||||||||||| |||||||| Sbjct: 1763 gaatgtggagtatggtagagattttgtgaataaatcagcaaggttatcacatga 1816
>ref|XM_474960.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1332 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 1140 tttaggagcaatatgcttagtgatgttgctcttaatata 1102
>ref|XM_471582.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2595 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 2403 tttaggagcaatatgcttagtgatgttgctcttaatata 2365
>gb|AF172282.1| Oryza sativa adh1-adh2 region Length = 339485 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 10428 tttaggagcaatatgcttagtgatgttgctcttaatata 10466
>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21, complete sequence Length = 155290 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 38836 tttaggagcaatatgcttagtgatgttgctcttaatata 38798
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 14173698 tttaggagcaatatgcttagtgatgttgctcttaatata 14173660 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 16424577 ggagcaatatgcttagtgatgttgctcttaatata 16424543 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 26300741 taatttatgtaattagtttt 26300722
>gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037P04, complete sequence Length = 139693 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 137930 tttaggagcaatatgcttagtgatgttgctcttaatata 137892
>gb|AC123515.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0033E08, complete sequence Length = 149241 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 927 tttaggagcaatatgcttagtgatgttgctcttaatata 889
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 2060696 tttaggagcaatatgcttagtgatgttgctcttaatata 2060658
>gb|AC099734.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0004A06, complete sequence Length = 153510 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 151425 tttaggagcaatatgcttagtgatgttgctcttaatata 151387
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 145108 tttaggagcaatatgcttagtgatgttgctcttaatata 145070
>emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065J03, complete sequence Length = 144146 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 111014 tttaggagcaatatgcttagtgatgttgctcttaatata 110976
>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence Length = 122903 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 47989 tttaggagcaatatgcttagtgatgttgctcttaatata 47951
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 17772732 tttaggagcaatatgcttagtgatgttgctcttaatata 17772694 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 12483211 tttaggagcaatatgcttagtgatgttgctcttaatata 12483249 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 8354820 tttaggagcaatatgcttagtgatgttgctcttaatata 8354858 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||| |||||||||||||| ||||| Sbjct: 7522591 tttaggagcaatatgctttgtgatattgctcttaatata 7522629 Score = 44.1 bits (22), Expect = 0.53 Identities = 46/54 (85%) Strand = Plus / Plus Query: 428 gaatgttgagtttggtaaagacttagtaaacaaatcagcaaggttgtcacatga 481 |||||| |||| ||||||||| || || || ||||||||||| || |||||||| Sbjct: 797396 gaatgtggagtatggtaaagattttgtgaataaatcagcaagattatcacatga 797449 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 ctaatttatgtaattagtttt 184 ||||||||||||||||||||| Sbjct: 35322546 ctaatttatgtaattagtttt 35322566 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 ctaatttatgtaattagtttt 184 ||||||||||||||||||||| Sbjct: 25735939 ctaatttatgtaattagtttt 25735919 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 23361864 taatttatgtaattagtttt 23361883 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 21567490 taatttatgtaattagtttt 21567509
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 15559133 tttaggagcaatatgcttagtgatgttgctcttaatata 15559095 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||||||||||||||||||| |||||||| ||||| Sbjct: 9790744 ggagaaatatgcttagtgatgttgctcttaatata 9790778 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 5446606 ggagcaatatgcttagtgatgttgctcttaatata 5446572
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 5665370 tttaggagcaatatgcttagtgatgttgctcttaatata 5665332
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 2060696 tttaggagcaatatgcttagtgatgttgctcttaatata 2060658 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 446 agacttagtaaacaaatcagcaaggttgtcacatga 481 |||||||||||||||||| || | ||||||||||| Sbjct: 22429022 agacttagtaaacaaatctgccaaattgtcacatga 22429057
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 1085772 tttaggagcaatatgcttagtgatgttgctcttaatata 1085734 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Minus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatatatcatgtctgcatct 590 ||||||| |||||| || ||||||||||||||||| || | ||| ||||||| Sbjct: 13204763 ttaggagcaatatgtttggtgatattgctcttgatgtagcctgtttgcatct 13204712 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| || ||||| ||||| Sbjct: 10301167 tttaggagcaatatgcttagtgatgttactcttaatata 10301205 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 547 aatatgcttagtgatattgctcttgatata 576 ||||||||||||||| |||||||| ||||| Sbjct: 9689338 aatatgcttagtgatgttgctcttaatata 9689309
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 22338587 tttaggagcaatatgcttagtgatgttgctcttaatata 22338625 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 13849287 ggagcaatatgcttagtgatgttgctcttaatata 13849321 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatatatcatgtctgcatctgtg 593 ||||||| ||| || || ||||||||||||||||| || | ||| |||||||||| Sbjct: 3845704 ttaggagcaatttgtttggtgatattgctcttgatgtagcctgtttgcatctgtg 3845758 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 21479902 taatttatgtaattagtttt 21479883 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 21466900 taatttatgtaattagtttt 21466881 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ggatatctcaagaagagact 368 |||||||||||||||||||| Sbjct: 18832959 ggatatctcaagaagagact 18832940
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatatatcatgtctgcatctgtg 593 ||||||| |||||| || ||||||||||||||||| || | ||| |||||||||| Sbjct: 16707364 ttaggagcaatatgtttggtgatattgctcttgatgtagcctgtttgcatctgtg 16707310 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 547 aatatgcttagtgatattgctcttgatatatcatgtctgcatct 590 ||||||||| ||||||||||||||||| || | ||| ||||||| Sbjct: 24004392 aatatgcttggtgatattgctcttgatgtaacctgtttgcatct 24004349 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 22398529 ggagcaatatgcttagtgatgttgctcttaatata 22398563 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 ctaatttatgtaattagtttta 185 |||||||||||||||||||||| Sbjct: 16055681 ctaatttatgtaattagtttta 16055660
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 14168673 tttaggagcaatatgcttagtgatgttgctcttaatata 14168635 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 16418210 ggagcaatatgcttagtgatgttgctcttaatata 16418176 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 26392050 taatttatgtaattagtttt 26392031
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 12317539 tttaggagcaatatgcttagtgatgttgctcttaatata 12317501
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 24416321 tttaggagcaatatgcttagtgatgttgctcttaatata 24416359 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 156755 tttaggagcaatatgcttagtgatgttgctcttaatata 156793 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||| ||| ||||||||||||||| |||||||| ||||| Sbjct: 13633166 tttatgagcaatatgcttagtgatgttgctcttaatata 13633128 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 13173237 ggagcaatatgcttagtgatgttgctcttaatata 13173203
>dbj|AP006267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0004F07 Length = 135890 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 126597 tttaggagcaatatgcttagtgatgttgctcttaatata 126559
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 162225 tttaggagcaatatgcttagtgatgttgctcttaatata 162263
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 154557 tttaggagcaatatgcttagtgatgttgctcttaatata 154595
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatatatcatgtctgcatctgtg 593 ||||||| |||||| || ||||||||||||||||| || | ||| |||||||||| Sbjct: 58851 ttaggagcaatatgtttggtgatattgctcttgatgtagcctgtttgcatctgtg 58797
>dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1134_E08 Length = 153002 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 123465 tttaggagcaatatgcttagtgatgttgctcttaatata 123427
>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1100H02 Length = 128773 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 37715 tttaggagcaatatgcttagtgatgttgctcttaatata 37677
>dbj|AP005169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077J18 Length = 180944 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 73834 tttaggagcaatatgcttagtgatgttgctcttaatata 73872
>dbj|AP004845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1233_A01 Length = 98378 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 79564 tttaggagcaatatgcttagtgatgttgctcttaatata 79526
>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1144B06 Length = 133689 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 35570 tttaggagcaatatgcttagtgatgttgctcttaatata 35608
>dbj|AP004662.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0048G02 Length = 155542 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 154963 tttaggagcaatatgcttagtgatgttgctcttaatata 155001
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 558 tgatattgctcttgatatatcatgtctgcatctgtgcaacaca 600 ||||||||||||||||||| | ||||| |||||||| |||||| Sbjct: 109102 tgatattgctcttgatatagcctgtctccatctgtgtaacaca 109060
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 2060647 tttaggagcaatatgcttagtgatgttgctcttaatata 2060609 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 446 agacttagtaaacaaatcagcaaggttgtcacatga 481 |||||||||||||||||| || | ||||||||||| Sbjct: 22441090 agacttagtaaacaaatctgccaaattgtcacatga 22441125
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 5731847 tttaggagcaatatgcttagtgatgttgctcttaatata 5731809
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 15514398 tttaggagcaatatgcttagtgatgttgctcttaatata 15514360 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||||||||||||||||||| |||||||| ||||| Sbjct: 9790629 ggagaaatatgcttagtgatgttgctcttaatata 9790663 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 5446595 ggagcaatatgcttagtgatgttgctcttaatata 5446561
>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22, complete sequence Length = 181498 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||| |||||||||||||| ||||| Sbjct: 45064 tttaggagcaatatgctttgtgatattgctcttaatata 45102
>emb|AL731592.2|OSJN00242 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B17, complete sequence Length = 99093 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 67388 tttaggagcaatatgcttagtgatgttgctcttaatata 67426
>emb|AL928779.3|CNS08CC9 Oryza sativa chromosome 12, . BAC OSJNBa0054I14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148089 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||||||||||||||||||| |||||||| ||||| Sbjct: 116701 ggagaaatatgcttagtgatgttgctcttaatata 116735
>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455C04 Length = 147940 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 105301 tttaggagcaatatgcttagtgatgttgctcttaatata 105339
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| |||||||| ||||| Sbjct: 141685 tttaggagcaatatgcttagtgatgttgctcttaatata 141723
>gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1171_H02, complete sequence Length = 109969 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatata 576 ||||||| ||||||||||||||| |||||||| ||||| Sbjct: 49447 ttaggagcaatatgcttagtgatgttgctcttaatata 49410
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatata 576 ||||||| ||||||||||||||| |||||||| ||||| Sbjct: 9067450 ttaggagcaatatgcttagtgatgttgctcttaatata 9067413 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| |||||||||||| || |||||||| ||||| Sbjct: 14411404 tttaggagcaatatgcttagttatgttgctcttaatata 14411442
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 547 aatatgcttagtgatattgctcttgatatatcatgtctgcatct 590 ||||||||| ||||||||||||||||| || | ||| ||||||| Sbjct: 134003 aatatgcttggtgatattgctcttgatgtaacctgtttgcatct 133960
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 547 aatatgcttagtgatattgctcttgatatatcatgtctgcatct 590 ||||||||| ||||||||||||||||| || | ||| ||||||| Sbjct: 14085 aatatgcttggtgatattgctcttgatgtaacctgtttgcatct 14042
>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0055N01 Length = 154783 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Minus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatatatcatgtctgcatct 590 ||||||| |||||| || ||||||||||||||||| || | ||| ||||||| Sbjct: 26197 ttaggagcaatatgtttggtgatattgctcttgatgtagcctgtttgcatct 26146
>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0048A13 Length = 137680 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Minus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatatatcatgtctgcatct 590 ||||||| |||||| || ||||||||||||||||| || | ||| ||||||| Sbjct: 126853 ttaggagcaatatgtttggtgatattgctcttgatgtagcctgtttgcatct 126802
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| |||||||||||| || |||||||| ||||| Sbjct: 42112 tttaggagcaatatgcttagttatgttgctcttaatata 42150
>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete sequence Length = 146775 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 42633 ggagcaatatgcttagtgatgttgctcttaatata 42667
>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence Length = 98937 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 166 aatttatgtaattagttttaaca 188 ||||||||||||||||||||||| Sbjct: 85971 aatttatgtaattagttttaaca 85949
>dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045F02 Length = 215378 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||| ||| ||||||||||||||| |||||||| ||||| Sbjct: 187126 tttatgagcaatatgcttagtgatgttgctcttaatata 187088
>dbj|AP005605.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_C01 Length = 192857 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatatatcatgtctgcatctgtg 593 ||||||| ||| || || ||||||||||||||||| || | ||| |||||||||| Sbjct: 110921 ttaggagcaatttgtttggtgatattgctcttgatgtagcctgtttgcatctgtg 110975
>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1104_G11 Length = 140093 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||||||| ||||||||||||||| || ||||| ||||| Sbjct: 8872 tttaggagcaatatgcttagtgatgttactcttaatata 8910
>dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0498C03 Length = 146394 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 35662 ggagcaatatgcttagtgatgttgctcttaatata 35696
>dbj|AP003336.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151H08 Length = 123001 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 538 tttaggagaaatatgcttagtgatattgctcttgatata 576 |||| ||| ||||||||||||||| |||||||| ||||| Sbjct: 38404 tttatgagcaatatgcttagtgatgttgctcttaatata 38366
>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487E11 Length = 151303 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 45538 ggagcaatatgcttagtgatgttgctcttaatata 45504
>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0406D01 Length = 163932 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 163356 ggagcaatatgcttagtgatgttgctcttaatata 163390
>dbj|AP004561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0465H09 Length = 148590 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 57006 ggagcaatatgcttagtgatgttgctcttaatata 57040
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 542 ggagaaatatgcttagtgatattgctcttgatata 576 |||| ||||||||||||||| |||||||| ||||| Sbjct: 19202 ggagcaatatgcttagtgatgttgctcttaatata 19236
>gb|AC165171.2| Zea mays clone CH201-145P10, complete sequence Length = 233369 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 539 ttaggagaaatatgcttagtgatattgctcttgatata 576 |||||| ||||||||||||| ||||| ||||| ||||| Sbjct: 104836 ttaggacaaatatgcttagtcatattactcttaatata 104799
>emb|AL606992.3|OSJN00116 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L13, complete sequence Length = 143386 Score = 44.1 bits (22), Expect = 0.53 Identities = 46/54 (85%) Strand = Plus / Plus Query: 428 gaatgttgagtttggtaaagacttagtaaacaaatcagcaaggttgtcacatga 481 |||||| |||| ||||||||| || || || ||||||||||| || |||||||| Sbjct: 18057 gaatgtggagtatggtaaagattttgtgaataaatcagcaagattatcacatga 18110
>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0618D11 Length = 150103 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 ctaatttatgtaattagtttta 185 |||||||||||||||||||||| Sbjct: 84410 ctaatttatgtaattagtttta 84389
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0706E03 Length = 188028 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 547 aatatgcttagtgatattgctcttgatata 576 ||||||||||||||| |||||||| ||||| Sbjct: 129435 aatatgcttagtgatgttgctcttaatata 129406
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence Length = 130718 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 ctaatttatgtaattagtttt 184 ||||||||||||||||||||| Sbjct: 115666 ctaatttatgtaattagtttt 115646
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 ctaatttatgtaattagtttt 184 ||||||||||||||||||||| Sbjct: 32745 ctaatttatgtaattagtttt 32725
>gb|AY129334.1| Mycobacteriophage Rosebush, complete genome Length = 67480 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 tgcgtcggttccagggagtcg 101 ||||||||||||||||||||| Sbjct: 1693 tgcgtcggttccagggagtcg 1673
>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence Length = 191540 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 gtttggtaaagacttagtaaa 457 ||||||||||||||||||||| Sbjct: 49446 gtttggtaaagacttagtaaa 49466
>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence Length = 219471 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 gtttggtaaagacttagtaaa 457 ||||||||||||||||||||| Sbjct: 50664 gtttggtaaagacttagtaaa 50644
>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence Length = 166299 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 gtttggtaaagacttagtaaa 457 ||||||||||||||||||||| Sbjct: 59745 gtttggtaaagacttagtaaa 59725
>emb|BX247870.5| Zebrafish DNA sequence from clone RP71-24B12 in linkage group 14, complete sequence Length = 148854 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 ttttcccctaatttatgtaat 177 ||||||||||||||||||||| Sbjct: 44193 ttttcccctaatttatgtaat 44213
>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01, complete sequence Length = 127712 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 ctaatttatgtaattagtttt 184 ||||||||||||||||||||| Sbjct: 58866 ctaatttatgtaattagtttt 58846
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 ctaatttatgtaattagtttt 184 ||||||||||||||||||||| Sbjct: 118391 ctaatttatgtaattagtttt 118411
>ref|NM_197881.1| Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0027L23.19), mRNA Length = 1260 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 446 agacttagtaaacaaatcagcaaggttgtcacatga 481 |||||||||||||||||| || | ||||||||||| Sbjct: 1158 agacttagtaaacaaatctgccaaattgtcacatga 1123
>gb|AY769434.1| Homo sapiens matrix metalloproteinase 1 (interstitial collagenase) (MMP1) gene, complete cds Length = 12187 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ggagagatgcgactacagag 74 |||||||||||||||||||| Sbjct: 5865 ggagagatgcgactacagag 5846
>gb|AC160110.2| Mus musculus BAC clone RP24-142M20 from chromosome 9, complete sequence Length = 189619 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 gagaaatatgcttagtgata 562 |||||||||||||||||||| Sbjct: 86902 gagaaatatgcttagtgata 86883
>gb|AC145787.2| Xenopus tropicalis clone CH216-117C14, complete sequence Length = 150045 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 agagatgcgactacagagag 76 |||||||||||||||||||| Sbjct: 103108 agagatgcgactacagagag 103127
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 89899 taatttatgtaattagtttt 89918
>emb|CR388159.9| Zebrafish DNA sequence from clone DKEYP-15D11 in linkage group 7, complete sequence Length = 174456 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 aaaaactcttcttcaaaagt 273 |||||||||||||||||||| Sbjct: 10455 aaaaactcttcttcaaaagt 10436
>emb|AL450345.6| Human DNA sequence from clone RP11-300M24 on chromosome 6 Contains a novel gene, complete sequence Length = 183342 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 585 gcatctgtgcaacacatgcc 604 |||||||||||||||||||| Sbjct: 170549 gcatctgtgcaacacatgcc 170530
>emb|AL356115.9| Human DNA sequence from clone RP11-486O22 on chromosome 10 Contains the 3' end of a novel gene (KIAA1128, FLJ14262, FLJ25809) , the 5' end of a Siah-interacting protein (SIP) (calcyclin binding protein) pseudogene, ribosomal protein S3A pseudogene 5 (RPS3AP5) and two CpG islands, complete sequence Length = 150151 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 acaaggatatctcaagaaga 364 |||||||||||||||||||| Sbjct: 5397 acaaggatatctcaagaaga 5378
>emb|AL133388.7| Human DNA sequence from clone RP1-257B21 on chromosome 6q11.1-13 Contains part of the COL19A1 gene for collagen XIX alpha 1 and a ribosomal protein L37 (RPL37) pseudogene, complete sequence Length = 88428 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 577 tcatgtctgcatctgtgcaacaca 600 |||||||||| ||||||||||||| Sbjct: 32424 tcatgtctgcctctgtgcaacaca 32401
>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02, complete sequence Length = 167988 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 79185 taatttatgtaattagtttt 79204
>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence Length = 127952 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 2032 taatttatgtaattagtttt 2051
>emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19, complete sequence Length = 156002 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 89579 taatttatgtaattagtttt 89598
>emb|AL672013.9| Mouse DNA sequence from clone RP23-32G8 on chromosome 11 Contains the 3' end of the Ebf1 gene for early B-cell factor 1 and a novel gene, complete sequence Length = 207905 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 atattgctcttgatatatca 579 |||||||||||||||||||| Sbjct: 22704 atattgctcttgatatatca 22723
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence Length = 194455 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gggaagctttatcatcaaaa 257 |||||||||||||||||||| Sbjct: 74196 gggaagctttatcatcaaaa 74177
>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence Length = 181462 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gggaagctttatcatcaaaa 257 |||||||||||||||||||| Sbjct: 30122 gggaagctttatcatcaaaa 30103
>gb|AC074321.10| Homo sapiens chromosome 10 clone RP11-122F14, complete sequence Length = 177203 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 acaaggatatctcaagaaga 364 |||||||||||||||||||| Sbjct: 44920 acaaggatatctcaagaaga 44939
>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete sequence Length = 143961 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 446 agacttagtaaacaaatcagcaaggttgtcacatga 481 |||||||||||||||||| || | ||||||||||| Sbjct: 81045 agacttagtaaacaaatctgccaaattgtcacatga 81080
>gb|U78045.1|HSU78045 Human collagenase and stromelysin genes, complete cds, and metalloelastase gene, partial cds Length = 81826 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ggagagatgcgactacagag 74 |||||||||||||||||||| Sbjct: 8055 ggagagatgcgactacagag 8074
>gb|AC097711.2| Homo sapiens BAC clone RP11-162K6 from 4, complete sequence Length = 114657 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 cctaatctacgcttgaccatgtgg 217 ||||||||| |||||||||||||| Sbjct: 62983 cctaatctaagcttgaccatgtgg 63006
>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183111 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gggaagctttatcatcaaaa 257 |||||||||||||||||||| Sbjct: 83153 gggaagctttatcatcaaaa 83172
>gb|AC112485.4| Homo sapiens 3 BAC RP11-776B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168500 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tgatgttattgaacaaggat 352 |||||||||||||||||||| Sbjct: 41665 tgatgttattgaacaaggat 41646
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0528B09 Length = 156897 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 83897 taatttatgtaattagtttt 83878 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 70895 taatttatgtaattagtttt 70876
>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0524F03 Length = 167696 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 taatttatgtaattagtttt 184 |||||||||||||||||||| Sbjct: 166825 taatttatgtaattagtttt 166806
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ggatatctcaagaagagact 368 |||||||||||||||||||| Sbjct: 136408 ggatatctcaagaagagact 136389
>gb|AY105204.1| Zea mays PCO061649 mRNA sequence Length = 1208 Score = 40.1 bits (20), Expect = 8.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 450 ttagtaaacaaatcagcaaggttgtcacatgatttgactt 489 ||||| |||||||||||||| | ||||| |||||||||| Sbjct: 1165 ttagtgaacaaatcagcaagactatcacaagatttgactt 1126
>emb|CR376776.19| Zebrafish DNA sequence from clone CH211-13I23, complete sequence Length = 179675 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 tagcataatgtgatgttatt 342 |||||||||||||||||||| Sbjct: 69301 tagcataatgtgatgttatt 69320
>dbj|AP000647.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-75I23, complete sequence Length = 118818 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ggagagatgcgactacagag 74 |||||||||||||||||||| Sbjct: 94991 ggagagatgcgactacagag 95010
>dbj|AP000619.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-42C6, complete sequence Length = 103181 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ggagagatgcgactacagag 74 |||||||||||||||||||| Sbjct: 45769 ggagagatgcgactacagag 45788
>dbj|AP000442.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-60A24, complete sequence Length = 117502 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 478 atgatttgacttgcagaatgcttatttc 505 ||||||||||||| || ||||||||||| Sbjct: 19608 atgatttgacttgtagcatgcttatttc 19581
>gb|AC069561.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-263o15, complete sequence Length = 201162 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 gagaaatatgcttagtgata 562 |||||||||||||||||||| Sbjct: 149973 gagaaatatgcttagtgata 149954
>dbj|AP004968.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43O24, TM0145, complete sequence Length = 134976 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 agacttagtaaacaaatcagcaag 469 ||||||||||||||| |||||||| Sbjct: 5782 agacttagtaaacaagtcagcaag 5805
>dbj|AP004956.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34I04, TM0133, complete sequence Length = 106411 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 agacttagtaaacaaatcagcaag 469 ||||||||||||||| |||||||| Sbjct: 78941 agacttagtaaacaagtcagcaag 78964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,804,083 Number of Sequences: 3902068 Number of extensions: 5804083 Number of successful extensions: 114323 Number of sequences better than 10.0: 108 Number of HSP's better than 10.0 without gapping: 133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111604 Number of HSP's gapped (non-prelim): 2717 length of query: 607 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 584 effective length of database: 17,143,297,704 effective search space: 10011685859136 effective search space used: 10011685859136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
