ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6n14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PMA1_ZYGRO (P24545) Plasma membrane ATPase (EC 3.6.3.6) (Proton ... 28 6.8
2PMA2_YEAST (P19657) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proto... 28 6.8
3PMA1_YEAST (P05030) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proto... 28 6.8
4PMA1_KLULA (P49380) Plasma membrane ATPase (EC 3.6.3.6) (Proton ... 28 6.8
5MAN1_HUMAN (Q9Y2U8) Inner nuclear membrane protein Man1 (LEM dom... 28 8.8

>PMA1_ZYGRO (P24545) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)|
          Length = 920

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 69  ASRGFHATGVKRMSGHGHDE 10
           ASRGF A GV R  G GH E
Sbjct: 508 ASRGFRALGVARKRGEGHWE 527



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>PMA2_YEAST (P19657) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)|
          Length = 947

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 69  ASRGFHATGVKRMSGHGHDE 10
           ASRGF A GV R  G GH E
Sbjct: 535 ASRGFRALGVARKRGEGHWE 554



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>PMA1_YEAST (P05030) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)|
          Length = 918

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 69  ASRGFHATGVKRMSGHGHDE 10
           ASRGF A GV R  G GH E
Sbjct: 506 ASRGFRALGVARKRGEGHWE 525



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>PMA1_KLULA (P49380) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)|
          Length = 899

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 69  ASRGFHATGVKRMSGHGHDE 10
           ASRGF A GV R  G GH E
Sbjct: 487 ASRGFRALGVARKRGEGHWE 506



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>MAN1_HUMAN (Q9Y2U8) Inner nuclear membrane protein Man1 (LEM domain containing|
           protein 3)
          Length = 911

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 79  GLGADGEEADPGSEAAVESSRHRLGARVFVWS 174
           G G DGEE DP +E  + +SR   G+R+  +S
Sbjct: 222 GEGEDGEERDPETEEPLWASRTVNGSRLVPYS 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,239,988
Number of Sequences: 219361
Number of extensions: 271001
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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