ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC096632.3| Homo sapiens chromosome 1 clone RP11-38O14, compl... 38 3.6
2gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, compl... 38 3.6
3gb|AC159234.2| Mus musculus BAC clone RP24-432D6 from chromosome... 38 3.6
4gb|AC132365.4| Mus musculus BAC clone RP23-459M5 from 6, complet... 38 3.6
5emb|AL671914.9| Mouse DNA sequence from clone RP23-1A3 on chromo... 38 3.6

>gb|AC096632.3| Homo sapiens chromosome 1 clone RP11-38O14, complete sequence
          Length = 159539

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 57     ctaggacaccaagagtccagcct 79
              ||||||| |||||||||||||||
Sbjct: 147266 ctaggaccccaagagtccagcct 147288



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>gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, complete sequence
          Length = 175641

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     aactaggacaccaagagtc 73
              |||||||||||||||||||
Sbjct: 164612 aactaggacaccaagagtc 164594



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>gb|AC159234.2| Mus musculus BAC clone RP24-432D6 from chromosome 12, complete sequence
          Length = 152905

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 55    aactaggacaccaagagtc 73
             |||||||||||||||||||
Sbjct: 13716 aactaggacaccaagagtc 13698



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>gb|AC132365.4| Mus musculus BAC clone RP23-459M5 from 6, complete sequence
          Length = 162524

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    ggtacatgatgacatgata 45
             |||||||||||||||||||
Sbjct: 66040 ggtacatgatgacatgata 66058



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>emb|AL671914.9| Mouse DNA sequence from clone RP23-1A3 on chromosome X, complete sequence
          Length = 229809

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 58     taggacaccaagagtccag 76
              |||||||||||||||||||
Sbjct: 215423 taggacaccaagagtccag 215405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 602,997
Number of Sequences: 3902068
Number of extensions: 602997
Number of successful extensions: 36411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36402
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 65
effective length of database: 17,151,101,840
effective search space: 1114821619600
effective search space used: 1114821619600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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