>FBS1_HUMAN (P62706) Fibrosin-1|
          Length = 177

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 160 CAWHCGDRRGCLVPIFFLVLQTFLPFRTREPWS 258
           CAW CG  RG     + L+  TF P R   PW+
Sbjct: 37  CAWECGSSRG----PWGLLRYTFAPVRACRPWA 65

>CLPP3_PROMA (Q7V9L6) ATP-dependent Clp protease proteolytic subunit 3 (EC|
           3.4.21.92) (Endopeptidase Clp 3)
          Length = 216

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 159 MCMALR**ARMFGSYLLPGPAN--LLAVPNTRALVSSPLSKVQARATTLXI 305
           MC  L   A   G++LL G +    LA+PN+R ++  PL   Q +A  + I
Sbjct: 113 MCYGL---AASMGAFLLAGGSKGKRLALPNSRIMIHQPLGGAQGQAVEIEI 160

>CLPP3_PROMP (Q7UZK7) ATP-dependent Clp protease proteolytic subunit 3 (EC|
           3.4.21.92) (Endopeptidase Clp 3)
          Length = 215

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 183 ARMFGSYLLPGPAN--LLAVPNTRALVSSPLSKVQARATTLXI 305
           A   G++LL G A    LA+PN+R ++  PL   Q +A  + I
Sbjct: 117 AASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIEI 159

>RLA0_DROME (P19889) 60S acidic ribosomal protein P0 (DNA-(apurinic or|
           apyrimidinic site) lyase) (EC 4.2.99.18)
           (Apurinic-apyrimidinic endonuclease)
          Length = 317

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 168 PCTFILMHNRATLSGIIFGPETLALADEDIGTRFARGRKHL 46
           P ++ L+ N+   SG IF PE L +  ED+  +F +G  +L
Sbjct: 182 PFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANL 222

>PAAE_ECOLI (P76081) Probable phenylacetic acid degradation NADH oxidoreductase|
           paaE (EC 1.-.-.-)
          Length = 356

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 350 REAKALDGQPTQSLRDXQRGRPGLHLRQGATDQGSRVRNGKKVCRT 213
           R+A  +     Q L++  R RPG HL   A+  G  +R    +CR+
Sbjct: 17  RDAVTITFAVPQPLQEAYRFRPGQHLTLKASFDGEELRRCYSICRS 62

>UME6_YEAST (P39001) Transcriptional regulator UME6 (Negative transcriptional|
           regulator of IME2)
          Length = 836

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = -3

Query: 263 ATDQGSRVRNGKKVCRTRKKIGTKH-------PRLSPQCHAHSF 153
           +T QG+R R G  +CR RKK  T+         RL   CH  +F
Sbjct: 760 STSQGTRSRTGCWICRLRKKKCTEERPHCFNCERLKLDCHYDAF 803

>CLPP3_PROMT (Q46ID4) ATP-dependent Clp protease proteolytic subunit 3 (EC|
           3.4.21.92) (Endopeptidase Clp 3)
          Length = 194

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 183 ARMFGSYLLPG--PANLLAVPNTRALVSSPLSKVQARATTLXI 305
           A   G++LL G      LA+PN+R ++  PL   Q +A  + I
Sbjct: 94  AASMGAFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAVEIEI 136

>E1BL_ADEM1 (P12536) E1B protein, large T-antigen (55 kDa protein)|
          Length = 433

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 148 HQNECAWHCGDRRGCLVPIFFLVLQTFLPFRTR 246
           H  EC   CG R   L P    +  T +P RTR
Sbjct: 389 HSRECQCFCGGRHRLLFPSVVHITPTVVPDRTR 421

>RLA0_ORYSA (P41095) 60S acidic ribosomal protein P0|
          Length = 318

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 186 APITAMPCTFILMHNRATLSGIIFGPETLALADEDIGTRFARG 58
           A +   P ++ L+      SG +F PE L L ++D+  +FA G
Sbjct: 178 AKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASG 220

>CLPP_DESDG (Q30Z79) ATP-dependent Clp protease proteolytic subunit (EC|
           3.4.21.92) (Endopeptidase Clp)
          Length = 200

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 183 ARMFGSYLLPG--PANLLAVPNTRALVSSPLSKVQARATTLXI 305
           A   G++LL    P    A+PN+R ++  P+   Q +AT + I
Sbjct: 95  AASMGAFLLAAGQPGMRFALPNSRIMIHQPMGGAQGQATDIDI 137

>2ABA_SCHPO (Q12702) Protein phosphatase PP2A regulatory subunit B (PR55)|
           (Protein phosphatase 2A 55 kDa regulatory subunit)
          Length = 463

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 208 RR*EPNIRAYHRNAMHIHSDAQ---PSDAIRYYLWS 110
           RR   N  AYH N++ ++SDA+    +D +R  LW+
Sbjct: 168 RRVYANAHAYHINSISVNSDAETYISADDLRINLWN 203

>CLPP_BURS3 (Q39FE8) ATP-dependent Clp protease proteolytic subunit (EC|
           3.4.21.92) (Endopeptidase Clp)
          Length = 217

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 159 MCMALR**ARMFGSYLLPGPAN--LLAVPNTRALVSSPLSKVQARATTLXI 305
           +CM L   A   G++LL   A     A+PN+R ++  PL   + +A+ + I
Sbjct: 114 LCMGL---AASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEI 161

>RS13_BORGA (Q661C0) 30S ribosomal protein S13|
          Length = 125

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 296 RGRPGLHLRQGATDQGSRVRNGKKVCRTRKKIGTK 192
           R R GL LR   T   +R R GK+     KKI +K
Sbjct: 91  RHRKGLPLRGQRTKTNARTRKGKRKTVANKKIASK 125

>RS13_BORBU (O51453) 30S ribosomal protein S13|
          Length = 125

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 296 RGRPGLHLRQGATDQGSRVRNGKKVCRTRKKIGTK 192
           R R GL LR   T   +R R GK+     KKI +K
Sbjct: 91  RHRKGLPLRGQRTKTNARTRKGKRKTVANKKIASK 125

>RLA0_MAIZE (O24573) 60S acidic ribosomal protein P0|
          Length = 318

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 186 APITAMPCTFILMHNRATLSGIIFGPETLALADEDIGTRFARG 58
           A +   P ++ L        G +F PE L L++ED+  +FA G
Sbjct: 178 AKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATG 220

>Y1031_SULSO (Q97Z99) UPF0100 protein SSO1031|
          Length = 402

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 183 ARMFGSYLLPGPANLLAVPNTRALVSSPLSKVQARATTLXITKTLG 320
           A + G YL+  P+N +   ++    SS LS     ++T  IT + G
Sbjct: 40  AGVVGYYLINHPSNSVTTSSSSTTTSSSLSSTSISSSTTNITSSQG 85

>RLA0_CHERU (P29764) 60S acidic ribosomal protein P0 (Light-induced 34 kDa|
           protein)
          Length = 321

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 126 GIIFGPETLALADEDIGTRFARG 58
           G +F PE L L ++D+  RFA G
Sbjct: 199 GSVFSPEVLDLTEDDLLARFATG 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,291,786
Number of Sequences: 219361
Number of extensions: 878616
Number of successful extensions: 2223
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2223
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)