ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234421.1|HVU234421 Hordeum vulgare partial mRNA; clone cMW... 670 0.0
2gb|BT016568.1| Zea mays clone Contig401 mRNA sequence 60 5e-06
3gb|DQ427307.1| Sorghum bicolor voucher PI585454 locus CSU535 gen... 54 3e-04
4gb|DQ427306.1| Sorghum bicolor voucher PI267539 locus CSU535 gen... 54 3e-04
5gb|DQ427305.1| Sorghum bicolor voucher PI267408 locus CSU535 gen... 54 3e-04
6gb|DQ427304.1| Sorghum bicolor voucher PI221607 locus CSU535 gen... 54 3e-04
7gb|DQ427303.1| Sorghum bicolor voucher PI152702 locus CSU535 gen... 54 3e-04
8gb|DQ427302.1| Sorghum bicolor voucher NSL92371 locus CSU535 gen... 54 3e-04
9gb|DQ427301.1| Sorghum bicolor voucher NSL87902b locus CSU535 ge... 54 3e-04
10gb|DQ427300.1| Sorghum bicolor voucher NSL87902a locus CSU535 ge... 54 3e-04
11gb|DQ427299.1| Sorghum bicolor voucher NSL87666 locus CSU535 gen... 54 3e-04
12gb|DQ427298.1| Sorghum bicolor voucher NSL77217 locus CSU535 gen... 54 3e-04
13gb|DQ427297.1| Sorghum bicolor voucher NSL77034 locus CSU535 gen... 54 3e-04
14gb|DQ427296.1| Sorghum bicolor voucher NSL56174 locus CSU535 gen... 54 3e-04
15gb|DQ427295.1| Sorghum bicolor voucher NSL56003 locus CSU535 gen... 54 3e-04
16gb|DQ427294.1| Sorghum bicolor voucher NSL55243 locus CSU535 gen... 54 3e-04
17gb|DQ427293.1| Sorghum bicolor voucher NSL51365 locus CSU535 gen... 54 3e-04
18gb|DQ427292.1| Sorghum bicolor voucher NSL51030 locus CSU535 gen... 54 3e-04
19gb|DQ427291.1| Sorghum bicolor voucher NSL50875 locus CSU535 gen... 54 3e-04
20gb|DQ427290.1| Sorghum bicolor voucher BTx623 locus CSU535 genom... 54 3e-04
21ref|XM_471067.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
22dbj|AK061898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
23emb|AJ698084.1| Oryza sativa (japonica cultivar-group) mRNA for ... 50 0.005
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
25dbj|AK065035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
26emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
27gb|DQ427308.1| Sorghum propinquum locus CSU535 genomic sequence 44 0.31
28gb|AF051802.1|AF051802 Feline immunodeficiency virus isolate FIV... 42 1.2
29gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, co... 40 4.8
30gb|AC127350.3| Mus musculus BAC clone RP23-64P14 from chromosome... 40 4.8
31gb|AC006024.1| Homo sapiens PAC clone RP5-1166G19 from 7, comple... 40 4.8
32emb|AL359714.18| Human DNA sequence from clone RP11-22A15 on chr... 40 4.8
33gb|AC022679.9| Homo sapiens chromosome 8, clone RP11-386G21, com... 40 4.8
34gb|AC148317.3| Pan troglodytes BAC clone CH251-519K22 from chrom... 40 4.8
35ref|NM_064268.1| Caenorhabditis elegans Serpentine Receptor, cla... 40 4.8
36ref|NM_064267.1| Caenorhabditis elegans Serpentine Receptor, cla... 40 4.8
37gb|AY107844.1| Zea mays PCO146552 mRNA sequence 40 4.8
38emb|Z81124.1|CET21B4 Caenorhabditis elegans Cosmid T21B4, comple... 40 4.8
39gb|AC141471.4| Mus musculus BAC clone RP24-326K11 from 18, compl... 40 4.8
40emb|Y13298.1|HSY13298 Homo sapiens GDP dissociation inhibitor be... 40 4.8
41dbj|AP000829.4| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 4.8 
>emb|AJ234421.1|HVU234421 Hordeum vulgare partial mRNA; clone cMWG0682
          Length = 577

 Score =  670 bits (338), Expect = 0.0
 Identities = 358/363 (98%), Gaps = 2/363 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttcacagactgcagctncagcagtatgtacacaagcctgcttacagatgctttctacc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcttcacagactgcagctacagcagtatgtacacaagcctgcttacagatgctttctacc 389

                                                                       
Query: 61  acgagcaaacctcgtccctatgtcctcatctgcaagcgcgagcgtctcaggaccaaagat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 388 acgagcaaacctcgtccctatgtcctcatctgcaagcgcgagcgtctcaggaccaa-gat 330

                                                                       
Query: 121 aataccggatagcgtcgctcggttgtgcatcagaatgaatgtgcatggcattgcggtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aataccggatagcgtcgctcggttgtgcatcagaatgaatgtgcatggcattgcggtgat 270

                                                                       
Query: 181 aggcgcggatgtttggttcc-tatcttcttcctggtcctgcaaaccttcttgccgttccg 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aggcgcggatgtttggttccctatcttcttcctggtcctgcaaaccttcttgccgttccg 210

                                                                       
Query: 240 aacacgagagccttggtcagtagccccttgtcgaaggtgcaagccagggcgaccacgctg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aacacgagagccttggtcagtagccccttgtcgaaggtgcaagccagggcgaccacgctg 150

                                                                       
Query: 300 nctatcacgaagactttgggtaggttgcccgtccagtgctttggcttctcgncttgggcg 359
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 149 cctatcacgaagactttgggtaggttgcccgtccagtgctttggcttctcggcttgggcg 90

              
Query: 360 ttg 362
           |||
Sbjct: 89  ttg 87
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>gb|BT016568.1| Zea mays clone Contig401 mRNA sequence
          Length = 845

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||||||||||||||||||||||||  ||| | | |||| ||  || ||||||| ||||  
Sbjct: 159 gtcgaaggtgcaagccagggcgacggcgccgtcgatcatgagaaccttgggtatgttgtt 100

                                
Query: 329 cgtccagtgctttggcttctc 349
            ||||||||||||||||||||
Sbjct: 99  tgtccagtgctttggcttctc 79
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>gb|DQ427307.1| Sorghum bicolor voucher PI585454 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427306.1| Sorghum bicolor voucher PI267539 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427305.1| Sorghum bicolor voucher PI267408 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427304.1| Sorghum bicolor voucher PI221607 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427303.1| Sorghum bicolor voucher PI152702 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427302.1| Sorghum bicolor voucher NSL92371 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427301.1| Sorghum bicolor voucher NSL87902b locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427300.1| Sorghum bicolor voucher NSL87902a locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427299.1| Sorghum bicolor voucher NSL87666 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427298.1| Sorghum bicolor voucher NSL77217 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427297.1| Sorghum bicolor voucher NSL77034 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427296.1| Sorghum bicolor voucher NSL56174 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427295.1| Sorghum bicolor voucher NSL56003 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427294.1| Sorghum bicolor voucher NSL55243 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427293.1| Sorghum bicolor voucher NSL51365 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427292.1| Sorghum bicolor voucher NSL51030 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427291.1| Sorghum bicolor voucher NSL50875 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>gb|DQ427290.1| Sorghum bicolor voucher BTx623 locus CSU535 genomic sequence
          Length = 689

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 113/142 (79%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagcccctt 268
           |||||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   
Sbjct: 159 tcctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccacc 100

                                                                       
Query: 269 gtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggtaggttgcc 328
           ||| ||||||||||||||||||||  | | | |||||| ||  || |||||||  |||  
Sbjct: 99  gtcaaaggtgcaagccagggcgacggcaccgcctatcatgagaaccttgggtatattgtt 40

                                 
Query: 329 cgtccagtgctttggcttctcg 350
            |||||||||||||||||||||
Sbjct: 39  tgtccagtgctttggcttctcg 18
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>ref|XM_471067.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1203

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 117/148 (79%)
 Strand = Plus / Minus

                                                                        
Query: 202  atcttcttcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagta 261
            |||| |||||||||||||||||||| || ||||| || || | ||||||||| || |  |
Sbjct: 1201 atctccttcctggtcctgcaaacctcctcgccgtaccaaatatgagagcctttgttaaca 1142

                                                                        
Query: 262  gccccttgtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggta 321
            | || | ||| || ||||| |||||||| ||  |||   |||  | || |||||||||||
Sbjct: 1141 gtccatggtcaaacgtgcatgccagggcaactgcgccacctacaaggatgactttgggta 1082

                                        
Query: 322  ggttgcccgtccagtgctttggcttctc 349
              ||||| |||||||||||||| |||||
Sbjct: 1081 tattgcctgtccagtgctttggtttctc 1054
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>dbj|AK061898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H01, full
            insert sequence
          Length = 1620

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 117/148 (79%)
 Strand = Plus / Minus

                                                                        
Query: 202  atcttcttcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagta 261
            |||| |||||||||||||||||||| || ||||| || || | ||||||||| || |  |
Sbjct: 1243 atctccttcctggtcctgcaaacctcctcgccgtaccaaatatgagagcctttgttaaca 1184

                                                                        
Query: 262  gccccttgtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggta 321
            | || | ||| || ||||| |||||||| ||  |||   |||  | || |||||||||||
Sbjct: 1183 gtccatggtcaaacgtgcatgccagggcaactgcgccacctacaaggatgactttgggta 1124

                                        
Query: 322  ggttgcccgtccagtgctttggcttctc 349
              ||||| |||||||||||||| |||||
Sbjct: 1123 tattgcctgtccagtgctttggtttctc 1096
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>emb|AJ698084.1| Oryza sativa (japonica cultivar-group) mRNA for membrane related
            protein (mrp1 gene)
          Length = 1366

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 117/148 (79%)
 Strand = Plus / Minus

                                                                        
Query: 202  atcttcttcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagta 261
            |||| |||||||||||||||||||| || ||||| || || | ||||||||| || |  |
Sbjct: 1246 atctccttcctggtcctgcaaacctcctcgccgtaccaaatatgagagcctttgttaaca 1187

                                                                        
Query: 262  gccccttgtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggta 321
            | || | ||| || ||||| |||||||| ||  |||   |||  | || |||||||||||
Sbjct: 1186 gtccatggtcaaacgtgcatgccagggcaactgcgccacctacaaggatgactttgggta 1127

                                        
Query: 322  ggttgcccgtccagtgctttggcttctc 349
              ||||| |||||||||||||| |||||
Sbjct: 1126 tattgcctgtccagtgctttggtttctc 1099
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 117/148 (79%)
 Strand = Plus / Plus

                                                                           
Query: 202     atcttcttcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagta 261
               |||| |||||||||||||||||||| || ||||| || || | ||||||||| || |  |
Sbjct: 1136356 atctccttcctggtcctgcaaacctcctcgccgtaccaaatatgagagcctttgttaaca 1136415

                                                                           
Query: 262     gccccttgtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggta 321
               | || | ||| || ||||| |||||||| ||  |||   |||  | || |||||||||||
Sbjct: 1136416 gtccatggtcaaacgtgcatgccagggcaactgcgccacctacaaggatgactttgggta 1136475

                                           
Query: 322     ggttgcccgtccagtgctttggcttctc 349
                 ||||| |||||||||||||| |||||
Sbjct: 1136476 tattgcctgtccagtgctttggtttctc 1136503
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>dbj|AK065035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H07, full
            insert sequence
          Length = 1869

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 117/148 (79%)
 Strand = Plus / Minus

                                                                        
Query: 202  atcttcttcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagta 261
            |||| |||||||||||||||||||| || ||||| || || | ||||||||| || |  |
Sbjct: 1488 atctccttcctggtcctgcaaacctcctcgccgtaccaaatatgagagcctttgttaaca 1429

                                                                        
Query: 262  gccccttgtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggta 321
            | || | ||| || ||||| |||||||| ||  |||   |||  | || |||||||||||
Sbjct: 1428 gtccatggtcaaacgtgcatgccagggcaactgcgccacctacaaggatgactttgggta 1369

                                        
Query: 322  ggttgcccgtccagtgctttggcttctc 349
              ||||| |||||||||||||| |||||
Sbjct: 1368 tattgcctgtccagtgctttggtttctc 1341
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>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
             complete sequence
          Length = 167895

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 117/148 (79%)
 Strand = Plus / Plus

                                                                         
Query: 202   atcttcttcctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagta 261
             |||| |||||||||||||||||||| || ||||| || || | ||||||||| || |  |
Sbjct: 78738 atctccttcctggtcctgcaaacctcctcgccgtaccaaatatgagagcctttgttaaca 78797

                                                                         
Query: 262   gccccttgtcgaaggtgcaagccagggcgaccacgctgnctatcacgaagactttgggta 321
             | || | ||| || ||||| |||||||| ||  |||   |||  | || |||||||||||
Sbjct: 78798 gtccatggtcaaacgtgcatgccagggcaactgcgccacctacaaggatgactttgggta 78857

                                         
Query: 322   ggttgcccgtccagtgctttggcttctc 349
               ||||| |||||||||||||| |||||
Sbjct: 78858 tattgcctgtccagtgctttggtttctc 78885
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>gb|DQ427308.1| Sorghum propinquum locus CSU535 genomic sequence
          Length = 696

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                       
Query: 211 ctggtcctgcaaaccttcttgccgttccgaacacgagagccttggtcagtagccccttgt 270
           |||| |||||||||||||| ||||| ||||| | ||  ||||||||||  |  ||   ||
Sbjct: 157 ctggccctgcaaaccttctcgccgtgccgaatatgacggccttggtcaacaatccaccgt 98

                                 
Query: 271 cgaaggtgcaagccagggcgac 292
           | ||||||||||||||||||||
Sbjct: 97  caaaggtgcaagccagggcgac 76



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 330 gtccagtgctttggcttctcg 350
           |||||||||||||||||||||
Sbjct: 38  gtccagtgctttggcttctcg 18
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>gb|AF051802.1|AF051802 Feline immunodeficiency virus isolate FIV-FcaWg1-2 pol polyprotein
           (pol) gene, partial cds
          Length = 476

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 201 tatcttcttcctggtcctgca 221
           |||||||||||||||||||||
Sbjct: 274 tatcttcttcctggtcctgca 254
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>gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, complete sequence
          Length = 167945

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    ttacagatgctttctaccac 62
             ||||||||||||||||||||
Sbjct: 28399 ttacagatgctttctaccac 28418
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>gb|AC127350.3| Mus musculus BAC clone RP23-64P14 from chromosome 18, complete sequence
          Length = 190228

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    gtccagtgctttggcttctc 349
              ||||||||||||||||||||
Sbjct: 174406 gtccagtgctttggcttctc 174425
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>gb|AC006024.1| Homo sapiens PAC clone RP5-1166G19 from 7, complete sequence
          Length = 90583

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tgcatcagaatgaatgtgca 165
             ||||||||||||||||||||
Sbjct: 87477 tgcatcagaatgaatgtgca 87496
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>emb|AL359714.18| Human DNA sequence from clone RP11-22A15 on chromosome 6 Contains part of
              the BAI3 gene for brain-specific angiogenesis inhibitor 3,
              complete sequence
          Length = 156129

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     ctatgtcctcatctgcaagc 97
              ||||||||||||||||||||
Sbjct: 141096 ctatgtcctcatctgcaagc 141077
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>gb|AC022679.9| Homo sapiens chromosome 8, clone RP11-386G21, complete sequence
          Length = 160766

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   cagaatgaatgtgcatggca 170
             ||||||||||||||||||||
Sbjct: 75055 cagaatgaatgtgcatggca 75074
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>gb|AC148317.3| Pan troglodytes BAC clone CH251-519K22 from chromosome 7, complete
             sequence
          Length = 154065

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tgcatcagaatgaatgtgca 165
             ||||||||||||||||||||
Sbjct: 65372 tgcatcagaatgaatgtgca 65391
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>ref|NM_064268.1| Caenorhabditis elegans Serpentine Receptor, class H family member
           (srh-67) (srh-67) mRNA, complete cds
          Length = 1026

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 gtcctgcaaaccttcttgcc 233
           ||||||||||||||||||||
Sbjct: 778 gtcctgcaaaccttcttgcc 797
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>ref|NM_064267.1| Caenorhabditis elegans Serpentine Receptor, class H family member
           (srh-68) (srh-68) mRNA, complete cds
          Length = 1026

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 gtcctgcaaaccttcttgcc 233
           ||||||||||||||||||||
Sbjct: 778 gtcctgcaaaccttcttgcc 797
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>gb|AY107844.1| Zea mays PCO146552 mRNA sequence
          Length = 823

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 245 gagagccttggtcagtagccccttgtcgaaggtgca 280
           ||||||||||||||| ||||||| ||| | ||||||
Sbjct: 456 gagagccttggtcaggagcccctggtcaagggtgca 421
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>emb|Z81124.1|CET21B4 Caenorhabditis elegans Cosmid T21B4, complete sequence
          Length = 37797

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   gtcctgcaaaccttcttgcc 233
             ||||||||||||||||||||
Sbjct: 19768 gtcctgcaaaccttcttgcc 19787



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   gtcctgcaaaccttcttgcc 233
             ||||||||||||||||||||
Sbjct: 18085 gtcctgcaaaccttcttgcc 18104
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>gb|AC141471.4| Mus musculus BAC clone RP24-326K11 from 18, complete sequence
          Length = 216048

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  gtccagtgctttggcttctc 349
            ||||||||||||||||||||
Sbjct: 4039 gtccagtgctttggcttctc 4058
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>emb|Y13298.1|HSY13298 Homo sapiens GDP dissociation inhibitor beta pseudogene
          Length = 3628

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 tgcatcagaatgaatgtgca 165
           ||||||||||||||||||||
Sbjct: 178 tgcatcagaatgaatgtgca 197
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>dbj|AP000829.4| Homo sapiens genomic DNA, chromosome 18p clone:RP11-732L14, complete
              sequences
          Length = 186383

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    tcaggaccaaagataatacc 126
              ||||||||||||||||||||
Sbjct: 174496 tcaggaccaaagataatacc 174515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,169,819
Number of Sequences: 3902068
Number of extensions: 2169819
Number of successful extensions: 35400
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35305
Number of HSP's gapped (non-prelim): 92
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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