ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472910.1| Oryza sativa (japonica cultivar-group), predic... 190 4e-45
2emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 190 4e-45
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
4emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 190 4e-45
5ref|XM_472909.1| Oryza sativa (japonica cultivar-group), predic... 121 3e-24
6dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
7ref|XM_472911.1| Oryza sativa (japonica cultivar-group), predic... 46 0.14
8dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
9ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC5... 42 2.2
10gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome... 42 2.2
11gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome... 42 2.2
12emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13 42 2.2
13gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complet... 40 8.6
14gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, comple... 40 8.6
15gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, compl... 40 8.6
16emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chr... 40 8.6
17emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 o... 40 8.6
18emb|AL589651.8| Mouse DNA sequence from clone RP23-138F20 on chr... 40 8.6
19emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in... 40 8.6
20gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Ca... 40 8.6
21gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine ph... 40 8.6
22gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosom... 40 8.6
23gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosom... 40 8.6
24emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 i... 40 8.6
25gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 ... 40 8.6
26gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds 40 8.6
27emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chr... 40 8.6

>ref|XM_472910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1653

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Minus

                                                                        
Query: 299  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
            |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 1576 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 1517

                                                                        
Query: 359  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
            |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 1516 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 1457

                                                                        
Query: 419  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
            | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 1456 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 1397

                                                                        
Query: 479  atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 538
            ||||||||||  | ||||| |||| |||| | ||||| ||||||||| |||  |||||||
Sbjct: 1396 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 1337

                                                                        
Query: 539  gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 598
            | ||||| |||| ||| || | ||| |  || || ||||||||||||||||| |||||||
Sbjct: 1336 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 1277

                        
Query: 599  cgcacggaccca 610
            | || |||||||
Sbjct: 1276 cacatggaccca 1265



to top

>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Minus

                                                                         
Query: 299   atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
             |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 35648 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 35589

                                                                         
Query: 359   attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
             |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 35588 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 35529

                                                                         
Query: 419   tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
             | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 35528 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 35469

                                                                         
Query: 479   atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 538
             ||||||||||  | ||||| |||| |||| | ||||| ||||||||| |||  |||||||
Sbjct: 35468 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 35409

                                                                         
Query: 539   gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 598
             | ||||| |||| ||| || | ||| |  || || ||||||||||||||||| |||||||
Sbjct: 35408 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 35349

                         
Query: 599   cgcacggaccca 610
             | || |||||||
Sbjct: 35348 cacatggaccca 35337



 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Minus

                                                                         
Query: 299   atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
             |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 30773 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 30714

                                                                         
Query: 359   attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
             | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 30713 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 30654

                                                                         
Query: 419   tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
             |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 30653 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 30594

                                                                         
Query: 479   atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 538
             |||||||||| |  || || ||||||||| | ||||| |||||||| ||||  |||||||
Sbjct: 30593 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 30534

                          
Query: 539   gcccagtttgttt 551
             | |||||||||||
Sbjct: 30533 gtccagtttgttt 30521



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 307   ttgaaccactggctctcagggtcgcag 333
             ||||||||||||||||| |||||||||
Sbjct: 39853 ttgaaccactggctctccgggtcgcag 39827



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Minus

                                                                            
Query: 299      atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
                |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 24038669 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 24038610

                                                                            
Query: 359      attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
                |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 24038609 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 24038550

                                                                            
Query: 419      tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
                | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 24038549 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 24038490

                                                                            
Query: 479      atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 538
                ||||||||||  | ||||| |||| |||| | ||||| ||||||||| |||  |||||||
Sbjct: 24038489 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 24038430

                                                                            
Query: 539      gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 598
                | ||||| |||| ||| || | ||| |  || || ||||||||||||||||| |||||||
Sbjct: 24038429 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 24038370

                            
Query: 599      cgcacggaccca 610
                | || |||||||
Sbjct: 24038369 cacatggaccca 24038358



 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Minus

                                                                            
Query: 299      atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
                |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 24033794 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 24033735

                                                                            
Query: 359      attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
                | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 24033734 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 24033675

                                                                            
Query: 419      tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
                |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 24033674 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 24033615

                                                                            
Query: 479      atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 538
                |||||||||| |  || || ||||||||| | ||||| |||||||| ||||  |||||||
Sbjct: 24033614 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 24033555

                             
Query: 539      gcccagtttgttt 551
                | |||||||||||
Sbjct: 24033554 gtccagtttgttt 24033542



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 307      ttgaaccactggctctcagggtcgcag 333
                ||||||||||||||||| |||||||||
Sbjct: 24042874 ttgaaccactggctctccgggtcgcag 24042848



to top

>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
            sequence
          Length = 90767

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Minus

                                                                        
Query: 299  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
            |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 4919 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 4860

                                                                        
Query: 359  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
            |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 4859 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 4800

                                                                        
Query: 419  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
            | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 4799 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 4740

                                                                        
Query: 479  atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 538
            ||||||||||  | ||||| |||| |||| | ||||| ||||||||| |||  |||||||
Sbjct: 4739 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 4680

                                                                        
Query: 539  gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 598
            | ||||| |||| ||| || | ||| |  || || ||||||||||||||||| |||||||
Sbjct: 4679 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 4620

                        
Query: 599  cgcacggaccca 610
            | || |||||||
Sbjct: 4619 cacatggaccca 4608



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 154/190 (81%)
 Strand = Plus / Minus

                                                                       
Query: 299 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
           |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 205 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 146

                                                                       
Query: 359 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
           | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 145 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 86

                                                                       
Query: 419 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
           |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 85  tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 26

                     
Query: 479 atttgctgca 488
           ||||||||||
Sbjct: 25  atttgctgca 16



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 307  ttgaaccactggctctcagggtcgcag 333
            ||||||||||||||||| |||||||||
Sbjct: 9116 ttgaaccactggctctccgggtcgcag 9090



to top

>ref|XM_472909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1665

 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Minus

                                                                        
Query: 299  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
            |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 1582 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 1523

                                                                        
Query: 359  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
            | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 1522 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 1463

                                                                        
Query: 419  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
            |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 1462 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 1403

                                                                        
Query: 479  atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 538
            |||||||||| |  || || ||||||||| | ||||| |||||||| ||||  |||||||
Sbjct: 1402 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 1343

                         
Query: 539  gcccagtttgttt 551
            | |||||||||||
Sbjct: 1342 gtccagtttgttt 1330



to top

>dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E03, full
            insert sequence
          Length = 1992

 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Minus

                                                                        
Query: 299  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 358
            |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 1592 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 1533

                                                                        
Query: 359  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 418
            | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 1532 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 1473

                                                                        
Query: 419  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 478
            |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 1472 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 1413

                                                                        
Query: 479  atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 538
            |||||||||| |  || || ||||||||| | ||||| |||||||| ||||  |||||||
Sbjct: 1412 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 1353

                         
Query: 539  gcccagtttgttt 551
            | |||||||||||
Sbjct: 1352 gtccagtttgttt 1340



to top

>ref|XM_472911.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 307  ttgaaccactggctctcagggtcgcag 333
            ||||||||||||||||| |||||||||
Sbjct: 1574 ttgaaccactggctctccgggtcgcag 1548



to top

>dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E08, full
           insert sequence
          Length = 2877

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 307 ttgaaccactggctctcagggtcgcag 333
           ||||||||||||||||| |||||||||
Sbjct: 358 ttgaaccactggctctccgggtcgcag 384



to top

>ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC548975 (LOC548975), mRNA
          Length = 2625

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  aacaggatttgctgcagccag 493
            |||||||||||||||||||||
Sbjct: 1540 aacaggatttgctgcagccag 1520



to top

>gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome 9, complete sequence
          Length = 163817

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 47    tttgttttgacagaaaaagaa 67
             |||||||||||||||||||||
Sbjct: 15741 tttgttttgacagaaaaagaa 15761



to top

>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence
          Length = 175708

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    tttgttttgacagaaaaagaa 67
             |||||||||||||||||||||
Sbjct: 38587 tttgttttgacagaaaaagaa 38567



to top

>emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13
          Length = 2625

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  aacaggatttgctgcagccag 493
            |||||||||||||||||||||
Sbjct: 1540 aacaggatttgctgcagccag 1520



to top

>gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complete sequence
          Length = 129837

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    gtgatttgttttgacagaaaaaga 66
             |||||||| |||||||||||||||
Sbjct: 62019 gtgatttgctttgacagaaaaaga 61996



to top

>gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, complete sequence
          Length = 205885

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    gtgatttgttttgacagaaaaaga 66
             |||||||| |||||||||||||||
Sbjct: 39719 gtgatttgctttgacagaaaaaga 39742



to top

>gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, complete sequence
          Length = 175672

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 43     gtgatttgttttgacagaaaaaga 66
              |||||||| |||||||||||||||
Sbjct: 163884 gtgatttgctttgacagaaaaaga 163907



to top

>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete
             sequence
          Length = 131465

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    acagaaaaagaaagtgctta 75
             ||||||||||||||||||||
Sbjct: 95286 acagaaaaagaaagtgctta 95267



to top

>emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 on chromosome 20p12 Contains
             the HAO1 gene for hydroxyacid oxidase (glycolate oxidase)
             1, ESTs, STSs and GSSs, complete sequence
          Length = 98569

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    tgacagaaaaagaaagtgct 73
             ||||||||||||||||||||
Sbjct: 45075 tgacagaaaaagaaagtgct 45094



to top

>emb|AL589651.8| Mouse DNA sequence from clone RP23-138F20 on chromosome 13 Contains
             five genes for olfactory receptors, a novel gene, the H1f5
             gene for H1 histone family member 5, three genes and one
             pseudogene for H2a histone family members, four genes for
             H2b, two genes for H4, and two genes for H3 histone family
             members and seven CpG islands, complete sequence
          Length = 222823

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     tttattctgaactgaacaac 28
             ||||||||||||||||||||
Sbjct: 98541 tttattctgaactgaacaac 98522



to top

>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8,
              complete sequence
          Length = 218866

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     ttttgacagaaaaagaaagt 70
              ||||||||||||||||||||
Sbjct: 214302 ttttgacagaaaaagaaagt 214283



to top

>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163077

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    agaggcctcacctggcatgc 286
              ||||||||||||||||||||
Sbjct: 150040 agaggcctcacctggcatgc 150021



to top

>gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine phosphatase-rho (Ptprt) gene,
            exons 10 and 11 and partial cds
          Length = 5957

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 267  agaggcctcacctggcatgcctct 290
            ||||||||||||| ||||||||||
Sbjct: 3377 agaggcctcaccttgcatgcctct 3400



to top

>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence
          Length = 195204

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gttttgacagaaaaagaaag 69
             ||||||||||||||||||||
Sbjct: 52418 gttttgacagaaaaagaaag 52437



to top

>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence
          Length = 208487

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    gttttgacagaaaaagaaag 69
             ||||||||||||||||||||
Sbjct: 58251 gttttgacagaaaaagaaag 58232



to top

>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7,
             complete sequence
          Length = 197927

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ttttgacagaaaaagaaagt 70
             ||||||||||||||||||||
Sbjct: 37316 ttttgacagaaaaagaaagt 37335



to top

>gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 IMAGE:6866732),
            complete cds
          Length = 2642

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 474  acaggatttgctgcagccag 493
            ||||||||||||||||||||
Sbjct: 1567 acaggatttgctgcagccag 1548



to top

>gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds
          Length = 2616

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 474  acaggatttgctgcagccag 493
            ||||||||||||||||||||
Sbjct: 1562 acaggatttgctgcagccag 1543



to top

>emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chromosome 2, complete
              sequence
          Length = 187043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 267    agaggcctcacctggcatgcctct 290
              ||||||||||||| ||||||||||
Sbjct: 154961 agaggcctcaccttgcatgcctct 154938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,005,392
Number of Sequences: 3902068
Number of extensions: 5005392
Number of successful extensions: 89493
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89418
Number of HSP's gapped (non-prelim): 67
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top