ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17d13 |
|---|---|
| Clone Library Name | barley_pub |
>PRPD2_CORGL (Q8NSL3) 2-methylcitrate dehydratase 2 (EC 4.2.1.79)| Length = 504 Score = 37.4 bits (85), Expect = 0.040 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = -2 Query: 326 DNAVKQFGAKLQITWNGGRAE----TVEQAFPLGEAEHPFTRDRVDEKFMSLAGPVYSKG 159 D A K FGA+ IT+ G V A PLG PF R++ +KF +LA V S+ Sbjct: 406 DPAEKAFGARAVITFKDGTVVEDELAVADAHPLGA--RPFAREQYIQKFRTLAEGVVSE- 462 Query: 158 KATEIIKLIDGLEK-HSVEDLLE 93 E + +D ++ H +EDL E Sbjct: 463 --KEQDRFLDAAQRTHELEDLSE 483
>FMN_CHICK (Q05858) Formin (Limb deformity protein)| Length = 1213 Score = 33.1 bits (74), Expect = 0.75 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = -2 Query: 236 EAEHPFTRDRVDEKFMSLAGPVYSKGKATEIIKLIDGLEKHSVEDLLEKI 87 E E+ F++D EK L+ K KA +IIKL+DG +V L+ + Sbjct: 811 EFEYLFSKDTTQEKRKPLSETYEKKTKAKKIIKLLDGKRSQTVGILISSL 860
>PRPD1_CORGL (Q8NSH9) 2-methylcitrate dehydratase 1 (EC 4.2.1.79)| Length = 498 Score = 31.6 bits (70), Expect = 2.2 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = -2 Query: 326 DNAVKQFGAKLQITWNGGRAE----TVEQAFPLGEAEHPFTRDRVDEKFMSLAGPVYSKG 159 D A K FGAK IT G V A PLG PF R+ EKF +LA + Sbjct: 403 DPAKKAFGAKAVITMADGTVIEDELAVADAHPLGA--RPFARENYIEKFRTLAQGIVIDS 460 Query: 158 KATEIIKLIDGL 123 + + + L Sbjct: 461 EQERFLHAVQSL 472
>GYRB_RICCN (Q92H87) DNA gyrase subunit B (EC 5.99.1.3)| Length = 807 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -2 Query: 398 GMKAYHKLADPGIHAVCDKISVQTDNAVKQFGAKLQITWNGGRAETV 258 G++AY K D HA+ I V T+NA +L + WN E + Sbjct: 231 GIEAYVKYIDRAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENI 277
>FMN1B_MOUSE (Q05859) Formin-1 isoform IV (Limb deformity protein)| Length = 1206 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 236 EAEHPFTRDRVDEKFMSLAGPVYSKGKATEIIKLIDGLEKHSVEDLLEKI 87 E E+ F++D +K L+ K K +IIKL+DG +V L+ + Sbjct: 804 EFEYLFSKDTTQQKKKPLSEAYEKKNKVKKIIKLLDGKRSQTVGILISSL 853
>CDK9_CAEEL (Q9TVL3) Probable cell division protein kinase 9 (EC 2.7.11.22) (EC| 2.7.11.23) (Cyclin-dependent kinase 9) Length = 478 Score = 31.2 bits (69), Expect = 2.8 Identities = 47/191 (24%), Positives = 69/191 (36%), Gaps = 5/191 (2%) Frame = -2 Query: 599 QEICTRLTTTGQTSPSDIDHVVLTMSSANFSLIGDPTPNKRHPENVIDAQFSAYYQVANA 420 QE R GQT+PS S G TPN + E + Q S Y ++ + Sbjct: 28 QEPPKRALIGGQTTPS--------------SSGGGQTPNGTNYELEVKQQLSNYQKLFDQ 73 Query: 419 LLYGSATGMKAYHKLADPGIHAVCDKISVQTDNAVKQFGAKLQITWN---GGRAETVEQA 249 Y + Y KL G + + N + K + N G + + Sbjct: 74 ATYPFIRDVSTYEKLNKIGQGTFGEVFKARCKNTGRMVALKKILMENEKEGFPITALREV 133 Query: 248 FPLGEAEHPFTRDRVDEKFMSLAGPVYSKGKATEIIKLIDGLEKHSVEDLLE--KIR*ND 75 L + +HP D ++ G SK +AT L+ L H + LL KIR Sbjct: 134 KMLEQLKHPNITDLIEVCSAKSTGTTGSKDRAT--FYLVMALCAHDLAGLLSNPKIR-MS 190 Query: 74 LE*TRTKERHL 42 L +T +HL Sbjct: 191 LVHIKTMMKHL 201
>FMN1A_MOUSE (Q05860) Formin-1 isoforms I/II/III (Limb deformity protein)| Length = 1468 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 236 EAEHPFTRDRVDEKFMSLAGPVYSKGKATEIIKLIDGLEKHSVEDLLEKI 87 E E+ F++D +K L+ K K +IIKL+DG +V L+ + Sbjct: 1030 EFEYLFSKDTTQQKKKPLSEAYEKKNKVKKIIKLLDGKRSQTVGILISSL 1079
>LRP11_MOUSE (Q8CB67) Low-density lipoprotein receptor-related protein 11| precursor Length = 483 Score = 30.8 bits (68), Expect = 3.7 Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = -1 Query: 585 ASHNNGTNLSFRHRSRRPHHELRQLLPHRRPNAQQTPSRERDRRAVLRLLPSGECPALRL 406 A+ G FRHR+ R L LP RP PS D RLL R Sbjct: 2 ATRGGGPGPGFRHRALRGLLLLCLWLPGSRPGEPAAPSSGVD-----RLLQDFRRQLQRA 56 Query: 405 RDRHESLPQ-AGGPR 364 R R E P+ GGPR Sbjct: 57 RPREELEPELLGGPR 71
>MRAW_PSEHT (Q3IFZ6) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 312 Score = 30.0 bits (66), Expect = 6.3 Identities = 26/106 (24%), Positives = 42/106 (39%) Frame = -2 Query: 545 DHVVLTMSSANFSLIGDPTPNKRHPENVIDAQFSAYYQVANALLYGSATGMKAYHKLADP 366 +H +T + L+ + P K ++ F A N+ L T +++ K+ P Sbjct: 174 EHTPITTTKQLADLVDEAVPVKDKFKHPATRTFQAIRIYINSELEEIQTALQSAIKVLKP 233 Query: 365 GIHAVCDKISVQTDNAVKQFGAKLQITWNGGRAETVEQAFPLGEAE 228 G V D VKQF K R ET+ + PL +A+ Sbjct: 234 GGRLVVISFHSLEDRIVKQFIRK------QSRGETLPRGLPLTDAQ 273
>CCAR1_MOUSE (Q8CH18) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) Length = 1146 Score = 30.0 bits (66), Expect = 6.3 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 15/71 (21%) Frame = -1 Query: 552 RHRSR-RPHHELRQLLPHRRPNAQQTPSRERDR--RAVLRLLP---------SGECPA-- 415 R R R R R+ P R+ + +++P RER+R R V R++P S +CP+ Sbjct: 315 RSRERDRERRRSRERSPQRKRSRERSPRRERERSPRRVRRVVPRYTVQFSKFSLDCPSCD 374 Query: 414 -LRLRDRHESL 385 + LR R+++L Sbjct: 375 MMELRRRYQNL 385
>CCAR1_HUMAN (Q8IX12) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) (Death inducer with SAP domain) Length = 1150 Score = 30.0 bits (66), Expect = 6.3 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 14/70 (20%) Frame = -1 Query: 552 RHRSRRPHHELRQLLPHRRPNAQQTPSRERDR--RAVLRLLP---------SGECPA--- 415 R R RR R+ P R+ + +++P RER+R R V R++P S +CP+ Sbjct: 322 RERERR---RSRERSPQRKRSRERSPRRERERSPRRVRRVVPRYTVQFSKFSLDCPSCDM 378 Query: 414 LRLRDRHESL 385 + LR R+++L Sbjct: 379 MELRRRYQNL 388
>CAD22_HUMAN (Q9UJ99) Cadherin-22 precursor (Pituitary and brain cadherin)| (PB-cadherin) Length = 828 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +1 Query: 172 TGPAKDMNFSSTLSRVKGCSASPSGKACSTVSARPPFHVICNLAPNCFTALSVCTEIL 345 +GP + + R+ GC +S + ++C+T + F + +L+P AL VC IL Sbjct: 584 SGPPTLSSTGTLTIRICGCDSSGTIQSCNTTA----FVMAASLSPGALIALLVCVLIL 637
>SLAP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein| B) (S-layer protein 1) Length = 1664 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -3 Query: 415 STAPRPA*KPTTSWRTQAFTPSATRSPCKQTTP*SSSAPNCRSHG 281 S P P+ +PT S + TP+ T +P TTP S S + S G Sbjct: 1361 SDEPTPSDEPTPSETPEEPTPTTTPTPTPSTTPTSGSGGSGGSGG 1405
>CAD22_RAT (Q63315) Cadherin-22 precursor (Pituitary and brain cadherin)| (PB-cadherin) Length = 813 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +1 Query: 172 TGPAKDMNFSSTLSRVKGCSASPSGKACSTVSARPPFHVICNLAPNCFTALSVCTEIL 345 +GP + + R+ GC +S + ++C+T + F + +L+P AL VC IL Sbjct: 581 SGPPTLSSTGTLTIRICGCDSSGTIQSCNTTA----FVMAASLSPGALIALLVCVLIL 634
>CAD22_MOUSE (Q9WTP5) Cadherin-22 precursor (Pituitary and brain cadherin)| (PB-cadherin) Length = 813 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +1 Query: 172 TGPAKDMNFSSTLSRVKGCSASPSGKACSTVSARPPFHVICNLAPNCFTALSVCTEIL 345 +GP + + R+ GC +S + ++C+T + F + +L+P AL VC IL Sbjct: 581 SGPPTLSSTGTLTIRICGCDSSGTIQSCNTTA----FVMAASLSPGALIALLVCVLIL 634 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,023,749 Number of Sequences: 219361 Number of extensions: 2095376 Number of successful extensions: 6749 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 6428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6747 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
