Clone Information

BLAST Search Result

Clone Name	rbaal16o01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	41	0.003
2	ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu...	39	0.009
3	ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu...	39	0.009
4	ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula...	39	0.009
5	ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu...	39	0.009
6	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	39	0.012
7	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	39	0.012
8	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	39	0.012
9	MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote...	37	0.046
10	GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: ...	33	0.67
11	GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ...	33	0.87
12	MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote...	33	0.87
13	CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2	33	0.87
14	NUCL_XENLA (P20397) Nucleolin (Protein C23)	32	1.1
15	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	32	1.1
16	HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor	32	1.9
17	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	31	2.5
18	HM8_XENLA (P14837) Homeobox protein 8 (XlHbox-8)	31	3.3
19	OTX1L_BRARE (Q90267) Homeobox protein Otx1l (ZOTX3)	31	3.3
20	PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5....	31	3.3
21	VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous...	30	4.3
22	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	30	4.3
23	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	30	4.3
24	RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p...	30	4.3
25	RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p...	30	4.3
26	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	30	5.7
27	BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)	30	5.7
28	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	30	5.7
29	NUCL_CHICK (P15771) Nucleolin (Protein C23)	30	5.7
30	HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (...	30	5.7
31	DSX_DROME (P23023) Protein doublesex	30	7.4
32	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	30	7.4
33	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	30	7.4
34	PSBB_EUGGR (P14813) Photosystem II P680 chlorophyll A apoprotein...	30	7.4
35	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	30	7.4
36	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	30	7.4
37	MEOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specifi...	30	7.4
38	MEOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2)	30	7.4
39	NUCL_MESAU (P08199) Nucleolin (Protein C23)	29	9.7
40	NUCL_PONPY (Q5RF26) Nucleolin	29	9.7
41	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	29	9.7
42	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	29	9.7
43	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	29	9.7
44	RECF_XANCP (Q8PEH3) DNA replication and repair protein recF	29	9.7
45	RECF_XANC8 (Q4V0S6) DNA replication and repair protein recF	29	9.7
46	NUCL_RAT (P13383) Nucleolin (Protein C23)	29	9.7
47	NUCL_MACFA (Q4R4J7) Nucleolin	29	9.7
48	DYH5_HUMAN (Q8TE73) Ciliary dynein heavy chain 5 (Axonemal beta ...	29	9.7
49	RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi...	29	9.7
50	RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p...	29	9.7
51	RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p...	29	9.7
52	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	29	9.7
53	MAM_DROME (P21519) Neurogenic protein mastermind	29	9.7
54	IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s...	29	9.7
55	IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s...	29	9.7
56	KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precu...	29	9.7

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473
           D+ FVHF +R +A+KA+      EI+G+ +E+ +AKP   K+ +
Sbjct: 375 DYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 418

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>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491
           D+ FVHF+ R  A++A+K      +DG  +EV++AKP+
Sbjct: 267 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304

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>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491
           D+ FVHF+ R  A++A+K      +DG  +EV++AKP+
Sbjct: 267 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304

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>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491
           D+ FVHF+ R  A++A+K      +DG  +EV++AKP+
Sbjct: 267 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304

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>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491
           D+ FVHF+ R  A++A+K      +DG  +EV++AKP+
Sbjct: 267 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304

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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473
           D+ F+HF ER  A+KA++     +++G+ +E+  AKP   K+ +
Sbjct: 372 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 415

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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473
           D+ F+HF ER  A+KA++     +++G+ +E+  AKP   K+ +
Sbjct: 372 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 415

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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473
           D+ F+HF ER  A+KA++     +++G+ +E+  AKP   K+ +
Sbjct: 282 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 325

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>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 37.0 bits (84), Expect = 0.046
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497
           +GFV F  + +A KA+K  E +EIDG+ LEV  A+
Sbjct: 583 YGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQ 617

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>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 657

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 79  IKKKSYRAKQNTLLNALHQS*QIHHLQKMQ-GKGKTSRADNAGGFLRHRHPAGHHVEEG 252
           +K+K  + ++   L  LHQ+  I  LQK++ G    +  + AGGF R  H  G H+ +G
Sbjct: 225 LKEKIAQLEEQIKLEELHQA-LISKLQKLKTGNETVTSPETAGGFSRTPHWPGQHIPKG 282

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>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 79  IKKKSYRAKQNTLLNALHQS*QIHHLQKMQ-GKGKTSRADNAGGFLRHRHPAGHHVEEG 252
           +K+K  + ++   L  LHQ+  I  LQK++ G    +  D AGG  R  H  G H+ +G
Sbjct: 224 LKEKIAQLEEQIKLEELHQA-LISKLQKLKTGNETVTHPDTAGGLSRTPHWPGQHIPKG 281

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>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 598 GFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDH 470
           GFV +     A +AVK   +  I    + V +AKP++D KP H
Sbjct: 44  GFVGYKSAEDAARAVKYFNRSFIRMSRISVDIAKPIADSKPQH 86

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>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2|
          Length = 1484

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
 Frame = +1

Query: 151  HLQKMQGKGKTSRADNAGGFLRHRHPAG-------------HHVEEGVEAAFHQVVAEHS 291
            H Q    +G  S   ++GGF R+R P G             HH +     A  Q  ++  
Sbjct: 1174 HPQHFPPRGFQSNHPHSGGFPRYRPPQGMRYSYHPPPQPSYHHYQRTPYYACPQSFSDWQ 1233

Query: 292  QGGH-QGAPSEPSSSQP 339
            +  H QG+PS P +SQP
Sbjct: 1234 RPLHPQGSPSGPPASQP 1250

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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 616 GIRGDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 479
           G    FGFV F+    A  A +  E  EIDG  + +  AKP  D +
Sbjct: 537 GASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQ 582

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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 604 DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497
           +FGFVH   +S A +A++    Y ++G  + V M+K
Sbjct: 36  NFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSK 71

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>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
 Frame = +1

Query: 217 HRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGA------PSEPSSSQPVLVLYHIS*AG*I 378
           H HP  HH E   E   H    EH +  H+        P       P    +H+      
Sbjct: 63  HHHPEEHH-EPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHL------ 115

Query: 379 QGHHHRHHMGLPCSHHK 429
            GHHH HH      HH+
Sbjct: 116 -GHHHHHHHAAHHHHHE 131



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 20/74 (27%), Positives = 23/74 (31%)
 Frame = +1

Query: 205 GFLRHRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQG 384
           G   H H A HH     E   H   A H            +   P    +H+        
Sbjct: 116 GHHHHHHHAAHH-HHHEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHHHHAP 174

Query: 385 HHHRHHMGLPCSHH 426
           HHH HH   P  HH
Sbjct: 175 HHHHHHHHAPHHHH 188



 Score = 30.4 bits (67), Expect = 4.3
 Identities = 21/70 (30%), Positives = 23/70 (32%)
 Frame = +1

Query: 217 HRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR 396
           H HP  HH   G    +H   A H    H  AP            +H         HHH 
Sbjct: 156 HHHPWFHHHHLG----YHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHA---PHHHH 208

Query: 397 HHMGLPCSHH 426
           HH   P  HH
Sbjct: 209 HHHHAPHHHH 218

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>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMA 500
           FGFV F +++SA+ A+     + +DG  LE+ ++
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700

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>HM8_XENLA (P14837) Homeobox protein 8 (XlHbox-8)|
          Length = 271

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 322 PSSSQPVLVLYHIS*AG*IQGHHHRHHMGLPCSHHKV 432
           P S +P++   H         HHH HH G+P  HH++
Sbjct: 68  PISEEPIVPHLHHH-----HYHHHHHHPGIPHPHHQM 99

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>OTX1L_BRARE (Q90267) Homeobox protein Otx1l (ZOTX3)|
          Length = 338

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 358 IS*AG*IQGHHHRHHMGLPCSHH 426
           +S A  + GHHH HH+G    HH
Sbjct: 262 LSTAAAVSGHHHPHHIGQSSGHH 284

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>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E)
          Length = 273

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491
           F FV F E   A+ A+    + EI G+ + V++A+P+
Sbjct: 13  FAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVARPV 49

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>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 29/107 (27%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
 Frame = +1

Query: 124 ALHQS*QIHHLQKMQGKGKTSRADNAGGFLRHRHPAG-----HHVEEGVEAAFHQVVAEH 288
           A H S   HH       G   +  +         PAG     HH   G      +    H
Sbjct: 224 AHHGSDLSHHSASESTSGHRGQGSHTSPSALSPTPAGVSADEHHNGSGTGGGAGEA-DHH 282

Query: 289 SQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHRHHMGLPCSHHK 429
           S   H   PS P    P    +H       Q HHH H + LP  HH+
Sbjct: 283 STTEHHAPPSHPQQQHP----HH-------QQHHHPHLL-LPQQHHQ 317

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>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473
           FGFVHF E  +A +A+       ++GQ  E+ +A  LS K+ D
Sbjct: 167 FGFVHFEEEGAAKEAIDALNGMLLNGQ--EIYVAPHLSRKERD 207



 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDK 482
           FGFV++ +   A+KAV+     E++G+ L V  A+  +++
Sbjct: 260 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 299

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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497
           FGFV F ER  A  A+  ++   +DG+ L V++AK
Sbjct: 62  FGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAK 96

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>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEI-DGQVLEVSMAKP 494
           F FVH  E + AL+A++    +E+  G+ L V M++P
Sbjct: 37  FAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73

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>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)|
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEI-DGQVLEVSMAKP 494
           F FVH  E + AL+A++    +E+  G+ L V M++P
Sbjct: 37  FAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKP 476
           F FV F +   A  AV+  + YE DG+ + V   + +  + P
Sbjct: 48  FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGP 89

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>BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)|
          Length = 645

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/78 (24%), Positives = 30/78 (38%)
 Frame = +1

Query: 229 AGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHRHHMG 408
           AG        AA    +A  S GG +G+P++    Q +           +  HHH H   
Sbjct: 66  AGAAAASAAAAAAAAALAAASSGGGRGSPTDSEREQSL-----------VAQHHHHHQQQ 114

Query: 409 LPCSHHKVEEDS*ELLQA 462
               HH+ ++   +  QA
Sbjct: 115 QQHHHHQQQQQQQQHQQA 132

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 461
           F F+ +    +A +AVK   K  ID   +EV  AK  SD     SFK
Sbjct: 44  FAFIGYKSADAAERAVKYFNKSFIDTARIEVEFAKTFSDPTVPLSFK 90

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           FGFV F+    A  A +  E  EIDG  + +  AKP
Sbjct: 593 FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKP 628

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>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core|
           protein C)
          Length = 282

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMA 500
           F FV F+   +A  AV G +   I GQVL++++A
Sbjct: 53  FAFVQFSNERTARTAVAGEDGRMIAGQVLDINLA 86

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>DSX_DROME (P23023) Protein doublesex|
          Length = 549

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 21/78 (26%)
 Frame = +1

Query: 235 HHVEEGVEAAFHQVVAEHSQGGHQ-----------------GAPSEPSSSQPVLVLYHI- 360
           HHV        H V A H+ GGH                   APS P+S        H+ 
Sbjct: 121 HHVAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAPAS--------HLG 172

Query: 361 ---S*AG*IQGHHHRHHM 405
              + A  I GH H HH+
Sbjct: 173 GSSTAASSIHGHAHAHHV 190

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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 461
           FGFV  + +     A +    YE+DG+ L V+   P  +K+ + SF+
Sbjct: 130 FGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP-PEKRENSSFR 175

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>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497
           FGFV + +   A KA+K  + + +DG  LEV +++
Sbjct: 768 FGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 802

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>PSBB_EUGGR (P14813) Photosystem II P680 chlorophyll A apoprotein (CP-47|
           protein)
          Length = 508

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 302 WPPWLCSATTWWNAASTPSSTW*PAGWRW 216
           W  ++ S T W+ +ASTP   + P  ++W
Sbjct: 247 WSAFVVSGTMWYGSASTPIELFGPTRYQW 275

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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 461
           FGFV  + +     A +    YE+DG+ L V+   P  +K+ + SF+
Sbjct: 130 FGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP-PEKRENSSFR 175

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>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497
           FGFV F+  +S L A++     E+DG+ + V+ A+
Sbjct: 51  FGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85

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>MEOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specific homeobox)|
          Length = 303

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +1

Query: 235 HHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR-HHMGL 411
           H   +G+       +A H +  H   P   +SS   ++  + +  G     HHR HH   
Sbjct: 13  HATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHH 72

Query: 412 PCSHHKVEEDS*ELLQA 462
              HH  ++   + LQ+
Sbjct: 73  HHHHHHHQQQQHQALQS 89

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>MEOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2)|
          Length = 303

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +1

Query: 235 HHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR-HHMGL 411
           H   +G+       +A H +  H   P   +SS   ++  + +  G     HHR HH   
Sbjct: 13  HATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHH 72

Query: 412 PCSHHKVEEDS*ELLQA 462
              HH  ++   + LQ+
Sbjct: 73  HHHHHHHQQQQHQALQS 89

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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           FGFV F     A  A +  E  EIDG  + +  AKP
Sbjct: 611 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 646

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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           FGFV F     A  A +  E  EIDG  + +  AKP
Sbjct: 613 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 648

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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           FGFV F     A  A +  E  EIDG  + +  AKP
Sbjct: 608 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 643

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>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497
           FGFV + +   A KA+K  + + +DG  LEV +++
Sbjct: 776 FGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISE 810

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>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497
           FGFV F+   S L A++     E+DG+ + V+ A+
Sbjct: 51  FGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85

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>RECF_XANCP (Q8PEH3) DNA replication and repair protein recF|
          Length = 368

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +2

Query: 143 KSITYKRCKAREKLVGPITPVASFATAIPP-----VTTSRRGWRRHSTRLLQNIAKAAIR 307
           +++T +R +  E+L   + PVA   TAI P       T   GWRRH   L   +  A  R
Sbjct: 190 ETLTSRRLQYLERLQERLVPVA---TAIAPSLGLSALTFAPGWRRHEVSLADALLLA--R 244

Query: 308 EHHRNHPHPSR 340
           E  R + + S+
Sbjct: 245 ERDRQNGYTSQ 255

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>RECF_XANC8 (Q4V0S6) DNA replication and repair protein recF|
          Length = 368

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +2

Query: 143 KSITYKRCKAREKLVGPITPVASFATAIPP-----VTTSRRGWRRHSTRLLQNIAKAAIR 307
           +++T +R +  E+L   + PVA   TAI P       T   GWRRH   L   +  A  R
Sbjct: 190 ETLTSRRLQYLERLQERLVPVA---TAIAPSLGLSALTFAPGWRRHEVSLADALLLA--R 244

Query: 308 EHHRNHPHPSR 340
           E  R + + S+
Sbjct: 245 ERDRQNGYTSQ 255

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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           FGFV F     A  A +  E  EIDG  + +  AKP
Sbjct: 614 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 649

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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           FGFV F     A  A +  E  EIDG  + +  AKP
Sbjct: 612 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 647

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>DYH5_HUMAN (Q8TE73) Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy|
            chain 5) (HL1)
          Length = 4624

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 462  LKEWSGFLSLKGLAMETSSTCPSISYFS 545
            LK+W  FL LK +  + S  CP + Y +
Sbjct: 1460 LKDWQAFLDLKKIIDDFSECCPLLEYMA 1487

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>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 563

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 379 QGHHHRHHMGLPCSHHKVEEDS 444
           +GHHH HH     SH K   DS
Sbjct: 336 RGHHHHHHEAADSSHGKKARDS 357

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>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEI-DGQVLEVSMAKP 494
           F FVH  E + A++A++    +E+  G+ L V M++P
Sbjct: 37  FAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73

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>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEI-DGQVLEVSMAKP 494
           F FVH  E + A++A++    +E+  G+ L V M++P
Sbjct: 37  FAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73

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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           FGFV F     A  A +  E  EIDG  + +  AKP
Sbjct: 611 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 646

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>MAM_DROME (P21519) Neurogenic protein mastermind|
          Length = 1594

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 63  QVSGVYQEKVLQGKTKHAPKRTPSKLTNPSPTKDARQ 173
           Q + V Q++ L+ K K A K+T  KL +PS     +Q
Sbjct: 166 QETTVLQKRFLESKNKRAAKKTDKKLPDPSQQHQQQQ 202

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>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           F F+ F  R  A +A+ G   +  D  +L V  AKP
Sbjct: 282 FAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317

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>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494
           F F+ F  R  A +A+ G   +  D  +L V  AKP
Sbjct: 282 FAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317

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>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)|
          Length = 657

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
 Frame = +1

Query: 217 HRHPAGHHVEEGVEAAFHQVVAEHSQG--GHQGAPSEPSSSQPVLVLYHIS*AG*IQGHH 390
           H H   HH  +    A HQ    H  G   HQ     P   Q V         G  Q HH
Sbjct: 66  HHHHHHHHQHQAPHQAPHQAHHHHHHGEVNHQA----PQVHQQV--------HGQDQAHH 113

Query: 391 HRHH 402
           H HH
Sbjct: 114 HHHH 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,811,305
Number of Sequences: 219361
Number of extensions: 1818135
Number of successful extensions: 6438
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 5894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6328
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result