Clone Information

BLAST Search Result

Clone Name	rbaal17c23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TAGX_STAAR (Q6GJ30) Putative glycosyltransferase tagX (EC 2.4.-....	30	1.2
2	PUT3_YEAST (P25502) Proline utilization trans-activator	30	2.0
3	TAGX_STAAW (Q8NXS4) Putative glycosyltransferase tagX (EC 2.4.-....	29	2.6
4	TAGX_STAAU (O05154) Putative glycosyltransferase tagX (EC 2.4.-....	29	2.6
5	TAGX_STAAS (Q6GBJ0) Putative glycosyltransferase tagX (EC 2.4.-....	29	2.6
6	TAGX_STAAN (Q7A711) Putative glycosyltransferase tagX (EC 2.4.-....	29	2.6
7	TAGX_STAAM (Q99VX6) Putative glycosyltransferase tagX (EC 2.4.-....	29	2.6
8	TAGX_STAAC (Q5HI28) Putative glycosyltransferase tagX (EC 2.4.-....	29	2.6
9	SSR5_RAT (P30938) Somatostatin receptor type 5 (SS5R)	29	3.4
10	SYG_METJA (Q57681) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine...	29	3.4
11	SSR5_MOUSE (O08858) Somatostatin receptor type 5 (SS5R)	29	3.4
12	VBR1_PYMVV (P27268) BR1 protein	28	4.5
13	VBR1_TGMV (P03564) BR1 protein	28	7.7
14	VBR1_BGMV (P06000) BR1 protein (Putative insect transmission pro...	28	7.7
15	TIE1_HUMAN (P35590) Tyrosine-protein kinase receptor Tie-1 precu...	28	7.7
16	Y1987_ARCFU (O28292) Hypothetical protein AF1987	27	10.0
17	POLN_WEEV (P13896) Nonstructural polyprotein (Polyprotein nsP123...	27	10.0
18	VBR1_PHUV (Q06927) BR1 protein	27	10.0
19	SYI_CAMJR (Q5HU41) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	27	10.0
20	GPR12_RAT (P30951) Probable G-protein coupled receptor 12 (R334)	27	10.0
21	GPR12_MOUSE (P35412) Probable G-protein coupled receptor 12 (GPC...	27	10.0
22	GPR12_HUMAN (P47775) Probable G-protein coupled receptor 12	27	10.0

>TAGX_STAAR (Q6GJ30) Putative glycosyltransferase tagX (EC 2.4.-.-) (Teichoic|
           acid biosynthesis protein X)
          Length = 353

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -2

Query: 187 YVLSMESTDDIQQW*H*SFDFSHMLYFSFSSFSGEIYDVFSQTVTSLACTIPCLYMFVCK 8
           Y++SM+ +D + Q     FD  + + F+  ++  EIY+++ QT+  +    P    F+ +
Sbjct: 281 YIMSMQHSDYVSQN---MFDIINTVEFNGENWDREIYELWRQTLIQVGINRPTYKRFLIQ 337

Query: 7   L 5
           L
Sbjct: 338 L 338

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>PUT3_YEAST (P25502) Proline utilization trans-activator|
          Length = 979

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 73  HHIFLQKKKRKKNTTYVRSQNFSATIVGCHLCS 171
           H   +Q K+ K + T+V  QN+SATI     CS
Sbjct: 656 HFASIQLKRFKTSNTFVNLQNYSATISSLLTCS 688

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>TAGX_STAAW (Q8NXS4) Putative glycosyltransferase tagX (EC 2.4.-.-) (Teichoic|
           acid biosynthesis protein X)
          Length = 353

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -2

Query: 187 YVLSMESTDDIQQW*H*SFDFSHMLYFSFSSFSGEIYDVFSQTVTSLACTIPCLYMFVCK 8
           Y++SM+ +D + Q     FD  + + F   ++  EIY+++ QT+  +    P    F+ +
Sbjct: 281 YIMSMQHSDYVSQN---MFDIINTVEFIGENWDREIYELWRQTLIQVGINRPTYKKFLIQ 337

Query: 7   L 5
           L
Sbjct: 338 L 338

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>TAGX_STAAU (O05154) Putative glycosyltransferase tagX (EC 2.4.-.-) (Teichoic|
           acid biosynthesis protein X)
          Length = 353

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -2

Query: 187 YVLSMESTDDIQQW*H*SFDFSHMLYFSFSSFSGEIYDVFSQTVTSLACTIPCLYMFVCK 8
           Y++SM+ +D + Q     FD  + + F   ++  EIY+++ QT+  +    P    F+ +
Sbjct: 281 YIMSMQHSDYVSQN---MFDIINTVEFIGENWDREIYELWRQTLIQVGINRPTYKKFLIQ 337

Query: 7   L 5
           L
Sbjct: 338 L 338

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>TAGX_STAAS (Q6GBJ0) Putative glycosyltransferase tagX (EC 2.4.-.-) (Teichoic|
           acid biosynthesis protein X)
          Length = 353

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -2

Query: 187 YVLSMESTDDIQQW*H*SFDFSHMLYFSFSSFSGEIYDVFSQTVTSLACTIPCLYMFVCK 8
           Y++SM+ +D + Q     FD  + + F   ++  EIY+++ QT+  +    P    F+ +
Sbjct: 281 YIMSMQHSDYVSQN---MFDIINTVEFIGENWDREIYELWRQTLIQVGINRPTYKKFLIQ 337

Query: 7   L 5
           L
Sbjct: 338 L 338

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>TAGX_STAAN (Q7A711) Putative glycosyltransferase tagX (EC 2.4.-.-) (Teichoic|
           acid biosynthesis protein X)
          Length = 353

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -2

Query: 187 YVLSMESTDDIQQW*H*SFDFSHMLYFSFSSFSGEIYDVFSQTVTSLACTIPCLYMFVCK 8
           Y++SM+ +D + Q     FD  + + F   ++  EIY+++ QT+  +    P    F+ +
Sbjct: 281 YIMSMQHSDYVSQN---MFDIINTVEFIGENWDREIYELWRQTLIQVGINRPTYKKFLIQ 337

Query: 7   L 5
           L
Sbjct: 338 L 338

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>TAGX_STAAM (Q99VX6) Putative glycosyltransferase tagX (EC 2.4.-.-) (Teichoic|
           acid biosynthesis protein X)
          Length = 353

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -2

Query: 187 YVLSMESTDDIQQW*H*SFDFSHMLYFSFSSFSGEIYDVFSQTVTSLACTIPCLYMFVCK 8
           Y++SM+ +D + Q     FD  + + F   ++  EIY+++ QT+  +    P    F+ +
Sbjct: 281 YIMSMQHSDYVSQN---MFDIINTVEFIGENWDREIYELWRQTLIQVGINRPTYKKFLIQ 337

Query: 7   L 5
           L
Sbjct: 338 L 338

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>TAGX_STAAC (Q5HI28) Putative glycosyltransferase tagX (EC 2.4.-.-) (Teichoic|
           acid biosynthesis protein X)
          Length = 353

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -2

Query: 187 YVLSMESTDDIQQW*H*SFDFSHMLYFSFSSFSGEIYDVFSQTVTSLACTIPCLYMFVCK 8
           Y++SM+ +D + Q     FD  + + F   ++  EIY+++ QT+  +    P    F+ +
Sbjct: 281 YIMSMQHSDYVSQN---MFDIINTVEFIGENWDREIYELWRQTLIQVGINRPTYKKFLIQ 337

Query: 7   L 5
           L
Sbjct: 338 L 338

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>SSR5_RAT (P30938) Somatostatin receptor type 5 (SS5R)|
          Length = 363

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 187 IHPSMHGQWSYHDLAPVSRHAHWVFASMSSIPVHA*AGVQ 306
           +HP    +W    +A ++  A WVF+ + S+P+   A VQ
Sbjct: 140 VHPLRSARWRRPRVAKMASAAVWVFSLLMSLPLLVFADVQ 179

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>SYG_METJA (Q57681) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 577

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 27  KQGIVQARDVTV*ENTSYISPEKEEKEKYNI 119
           +QG+++ R+ T  E   ++ PE++E EK+++
Sbjct: 202 RQGVIRLREFTQAEIEYFVHPERKEHEKFDL 232

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>SSR5_MOUSE (O08858) Somatostatin receptor type 5 (SS5R)|
          Length = 362

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 187 IHPSMHGQWSYHDLAPVSRHAHWVFASMSSIPVHA*AGVQ 306
           +HP    +W    +A ++  A WVF+ + S+P+   A VQ
Sbjct: 139 VHPLRSARWRRPRVAKLASAAVWVFSLLMSLPLLVFADVQ 178

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>VBR1_PYMVV (P27268) BR1 protein|
          Length = 256

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 93  KEEKEKYNICEKSKLQCYHCWMSSVLSMDKTYPS 194
           +  K  Y+   K+ L  Y+CWMS  +S   T+ S
Sbjct: 216 ESRKGVYDNINKNALLVYYCWMSDTVSKASTFVS 249

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>VBR1_TGMV (P03564) BR1 protein|
          Length = 256

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 111 YNICEKSKLQCYHCWMSSVLSMDKTYPS 194
           Y    K+ +  Y+CWMS ++S   T+ S
Sbjct: 222 YGNISKNAILVYYCWMSDIVSKASTFVS 249

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>VBR1_BGMV (P06000) BR1 protein (Putative insect transmission product)|
          Length = 256

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 126 KSKLQCYHCWMSSVLSMDKTYPS 194
           K+ L  Y+CWMS ++S   T+ S
Sbjct: 227 KNALLVYYCWMSDIMSKASTFVS 249

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>TIE1_HUMAN (P35590) Tyrosine-protein kinase receptor Tie-1 precursor (EC|
           2.7.10.1)
          Length = 1138

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = -1

Query: 305 CTPAHACTGMELMEAKTQCACLETGARSWYDHCPCIDGWIRLVHGEH 165
           C P H        + + QC C   G    +  C C  GW    HG H
Sbjct: 306 CAPGHFGA-----DCRLQCQCQNGGTCDRFSGCVCPSGW----HGVH 343

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>Y1987_ARCFU (O28292) Hypothetical protein AF1987|
          Length = 216

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 YNICEKSKLQCYHCWMSSVLSMDKTYPSIYARAVVIP 221
           +NI +  KL C  C++S+ +S  K Y       + IP
Sbjct: 90  FNITDSDKLTCLACFISAQISESKIYTKKGDSVIEIP 126

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>POLN_WEEV (P13896) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2466

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 146  PLLDVICALHGQDVSIHLCTGS----GHTMILHQFLGMHIGSLL 265
            PLLD+I A  G   S+HL TG+    G  M    FL + + +L+
Sbjct: 2257 PLLDLIEAAFGNITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLV 2300

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>VBR1_PHUV (Q06927) BR1 protein|
          Length = 256

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 111 YNICEKSKLQCYHCWMSSVLSMDKTYPS 194
           Y+   K+ +  Y+CWMS  +S   T+ S
Sbjct: 222 YDNISKNAILVYYCWMSDAMSKASTFVS 249

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>SYI_CAMJR (Q5HU41) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 917

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 66   ENTSYISPEKEEKEKYNICEKSKLQCYHCWMSSVLSMDKTYPSIYARAVV 215
            EN   ++  + E EK+ I + S  +C  CW   + S D+  P +    V+
Sbjct: 865  ENEEILAEFEVENEKFKITKASLCKCPRCW--KLQSKDEETPCLRCEEVL 912

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>GPR12_RAT (P30951) Probable G-protein coupled receptor 12 (R334)|
          Length = 334

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 150 CWMSSVLSM---DKTYPSIYARAVVIP 221
           CWM   L     D TYPSIY  A ++P
Sbjct: 263 CWMPFTLYSLIADYTYPSIYTYATLLP 289

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>GPR12_MOUSE (P35412) Probable G-protein coupled receptor 12 (GPCR01)|
          Length = 334

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 150 CWMSSVLSM---DKTYPSIYARAVVIP 221
           CWM   L     D TYPSIY  A ++P
Sbjct: 263 CWMPFTLYSLIADYTYPSIYTYATLLP 289

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>GPR12_HUMAN (P47775) Probable G-protein coupled receptor 12|
          Length = 334

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 150 CWMSSVLSM---DKTYPSIYARAVVIP 221
           CWM   L     D TYPSIY  A ++P
Sbjct: 263 CWMPFTLYSLIADYTYPSIYTYATLLP 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,131,727
Number of Sequences: 219361
Number of extensions: 950648
Number of successful extensions: 2675
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2675
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result