>IDI1_ARATH (Q38929) Isopentenyl-diphosphate delta-isomerase I (EC 5.3.3.2)|
           (IPP isomerase I) (Isopentenyl pyrophosphate isomerase
           I)
          Length = 233

 Score = 53.1 bits (126), Expect(2) = 7e-09
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = -2

Query: 132 PGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           P   +VVD FLM WW+H+ KGT+ EA DM+TIHKL
Sbjct: 199 PWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 233



 Score = 24.6 bits (52), Expect(2) = 7e-09
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 157 GEGGVKLSPWFR 122
           G+  VKLSPWFR
Sbjct: 191 GDEAVKLSPWFR 202

>IDI2_ARATH (Q42553) Isopentenyl-diphosphate delta-isomerase II (EC 5.3.3.2)|
           (IPP isomerase II) (Isopentenyl pyrophosphate isomerase
           II)
          Length = 284

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = -2

Query: 147 GXSCPPGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           G    P   +VVD FLM WW+H+ KGTL EA+DM+TIHKL
Sbjct: 245 GLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284

>IDI2_CLABR (Q39471) Isopentenyl-diphosphate delta-isomerase II (EC 5.3.3.2)|
           (IPP isomerase II) (Isopentenyl pyrophosphate isomerase
           II)
          Length = 286

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = -2

Query: 147 GXSCPPGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           G    P   +VVD FL  WW+H+ KGTL+EAVDM++IHKL
Sbjct: 247 GLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286

>IDI2_CLAXA (Q39664) Isopentenyl-diphosphate delta-isomerase II (EC 5.3.3.2)|
           (IPP isomerase II) (Isopentenyl pyrophosphate isomerase
           II)
          Length = 290

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 23/40 (57%), Positives = 28/40 (70%)
 Frame = -2

Query: 147 GXSCPPGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           G    P   +VVD FL  WW+H+ KGTL+EAVDM+TIH L
Sbjct: 251 GLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290

>IDI1_CLABR (Q39472) Isopentenyl-diphosphate delta-isomerase I (EC 5.3.3.2)|
           (IPP isomerase I) (Isopentenyl pyrophosphate isomerase
           I)
          Length = 287

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -2

Query: 147 GXSCPPGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           G    P   +VVD FL  WW+H+ KG+L +A DM+TIHKL
Sbjct: 248 GVKLSPWFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287

>IDI1_CAMAC (O48964) Isopentenyl-diphosphate delta-isomerase I (EC 5.3.3.2)|
           (IPP isomerase I) (Isopentenyl pyrophosphate isomerase
           I)
          Length = 235

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -2

Query: 147 GXSCPPGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           G    P   +VVD FL  WW+H+ KGT+ EA DM++IHKL
Sbjct: 195 GLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234

>IDI2_CAMAC (O48965) Isopentenyl-diphosphate delta-isomerase II (EC 5.3.3.2)|
           (IPP isomerase II) (Isopentenyl pyrophosphate isomerase
           II)
          Length = 309

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -2

Query: 147 GXSCPPGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           G    P   +VV+ FL  WW+H+ KGTL +A DM+TIHKL
Sbjct: 269 GLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKL 308

>IDI1_MESAU (O35586) Isopentenyl-diphosphate delta-isomerase 1 (EC 5.3.3.2)|
           (IPP isomerase 1) (Isopentenyl pyrophosphate isomerase
           1) (IPPI1)
          Length = 227

 Score = 31.6 bits (70), Expect(2) = 0.10
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 132 PGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           P   ++VD FL  WW++L    L++ VD E IH++
Sbjct: 195 PWFKIIVDTFLFKWWDNL--NHLSQFVDHEKIHRM 227



 Score = 21.6 bits (44), Expect(2) = 0.10
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 151 GGVKLSPWFR 122
           G VKL+PWF+
Sbjct: 189 GEVKLTPWFK 198

>IDI1_MOUSE (P58044) Isopentenyl-diphosphate delta-isomerase 1 (EC 5.3.3.2)|
           (IPP isomerase 1) (Isopentenyl pyrophosphate isomerase
           1) (IPPI1)
          Length = 227

 Score = 29.6 bits (65), Expect(2) = 0.46
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 132 PGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           P   ++ D FL  WW++L    L+  VD E IH+L
Sbjct: 195 PWFKIIADTFLFKWWDNL--NHLSPFVDHEKIHRL 227



 Score = 21.2 bits (43), Expect(2) = 0.46
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 151 GGVKLSPWFR 122
           G +KL+PWF+
Sbjct: 189 GEIKLTPWFK 198

>IDI1_RAT (O35760) Isopentenyl-diphosphate delta-isomerase 1 (EC 5.3.3.2)|
           (IPP isomerase 1) (Isopentenyl pyrophosphate isomerase
           1) (IPPI1)
          Length = 227

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 156 ARAGXSCPPGSGMVVDXFLMGWWEHLXKGTLAEAVDMETIHKL 28
           AR      P   ++ D FL  WW++L    L+  VD E IH++
Sbjct: 187 ARGEIKFTPWFKIIADAFLFKWWDNL--NHLSPFVDHEKIHRM 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,915,471
Number of Sequences: 219361
Number of extensions: 172187
Number of successful extensions: 429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 80,573,946
effective HSP length: 27
effective length of database: 74,651,199
effective search space used: 1791628776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)