ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17c16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009297.1| Triticum aestivum clone wlm1.pk0006.c5:fis, full ... 226 2e-56
2gb|BT016337.1| Zea mays clone Contig170 mRNA sequence 127 1e-26
3gb|AF330034.1| Zea mays isopentenyl pyrophosphate isomerase mRNA... 127 1e-26
4ref|NM_185702.2| Oryza sativa (japonica cultivar-group), mRNA 109 2e-21
5ref|XM_506401.1| PREDICTED Oryza sativa (japonica cultivar-group... 109 2e-21
6gb|AF188065.1|AF188065 Oryza sativa clone riceipp2 isopentenyl p... 109 2e-21
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 109 2e-21
8dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic D... 109 2e-21
9dbj|AK065871.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 2e-21
10dbj|AK061800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 2e-21
11dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic D... 109 2e-21
12gb|AY110432.1| Zea mays CL141_1 mRNA sequence 103 2e-19
13gb|AY104380.1| Zea mays PCO081637 mRNA sequence 76 3e-11
14gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.12
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.12
16dbj|AK099027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.12
17dbj|AK060336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.12
18gb|AC111129.12| Mus musculus chromosome 5, clone RP23-339H11, co... 42 0.48
19ref|XM_973087.1| PREDICTED: Mus musculus hypothetical protein LO... 42 0.48
20ref|XM_355598.4| PREDICTED: Mus musculus gene model 1043, (NCBI)... 42 0.48
21ref|XM_989078.1| PREDICTED: Mus musculus hypothetical protein LO... 42 0.48
22gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, co... 42 0.48
23ref|NM_190847.1| Oryza sativa (japonica cultivar-group), predic... 40 1.9
24gb|AC011296.3| Homo sapiens BAC clone RP11-96K1 from 7, complete... 40 1.9
25gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete se... 40 1.9
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
27dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
28dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.9
29dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.9
30gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 1.9
31gb|AC130658.36| Mus musculus chromosome 1, clone RP23-309D5, com... 38 7.5
32ref|XM_368481.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 38 7.5
33ref|XM_603916.2| PREDICTED: Bos taurus similar to E-1 enzyme, tr... 38 7.5
34ref|XM_876153.1| PREDICTED: Bos taurus similar to E-1 enzyme, tr... 38 7.5
35gb|AC008074.3| Homo sapiens BAC clone RP11-568N6 from 2, complet... 38 7.5
36emb|CR702802.2|CNS0G58E Tetraodon nigroviridis full-length cDNA 38 7.5
37emb|CR691373.2|CNS0FWEX Tetraodon nigroviridis full-length cDNA 38 7.5
38emb|CR687497.2|CNS0FTF9 Tetraodon nigroviridis full-length cDNA 38 7.5
39emb|AL391383.15| Human DNA sequence from clone RP11-532O21 on ch... 38 7.5
40gb|AC087499.12| Homo sapiens chromosome 17, clone RP11-218E15, c... 38 7.5
41gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosom... 38 7.5
42emb|AL732556.7| Mouse DNA sequence from clone RP24-144L11 on chr... 38 7.5
43gb|AC108210.4| Homo sapiens BAC clone RP11-457P14 from 4, comple... 38 7.5
44gb|AC087600.21| Homo sapiens 12q BAC RP11-495C23 (Roswell Park C... 38 7.5
45tpg|BK001591.1| TPA: TPA_exp: Homo sapiens chromosome 17 proxima... 38 7.5
46tpg|BK001590.1| TPA: TPA_exp: Homo sapiens chromosome 17 middle ... 38 7.5
47dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
48gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 38 7.5
49gb|AC149053.3| Mus musculus BAC clone RP24-502E20 from chromosom... 38 7.5
50gb|AC015818.32| Homo sapiens chromosome 17, clone RP11-434D2, co... 38 7.5
51gb|AC079044.21| Mus musculus strain C57BL/6J chromosome 16 clone... 38 7.5
52dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
53dbj|BS000171.1| Pan troglodytes chromosome 22 clone:PTB-086M04, ... 38 7.5
54dbj|BS000157.1| Pan troglodytes chromosome 22 clone:RP43-154K22,... 38 7.5
55gb|AC157563.12| Mus musculus chromosome 7, clone RP23-414I24, co... 38 7.5
56emb|AL353997.3|HS37N07 Homo sapiens chromosome 17 from PAC RPCI... 38 7.5
57gb|AC087802.13| Mus musculus strain C57BL/6J chromosome 16 clone... 38 7.5 
>gb|BT009297.1| Triticum aestivum clone wlm1.pk0006.c5:fis, full insert mRNA
           sequence
          Length = 990

 Score =  226 bits (114), Expect = 2e-56
 Identities = 142/151 (94%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   caagagatggcgtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgag 66
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 786 caagagatggcgtcctcacttgagcttgtggatggtttccatgtccaccgcctccgcgag 727

                                                                       
Query: 67  cgtgcccttctncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctga 126
           |||||| |||| || ||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 726 cgtgcctttctccaagtgctcccaccagcccatgaggaagttgtccaccacca-gcctga 668

                                          
Query: 127 accagggggacagcttnaccccgccctcgcc 157
           |||||||||||||||| || |||||||||||
Sbjct: 667 accagggggacagcttcacgccgccctcgcc 637
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>gb|BT016337.1| Zea mays clone Contig170 mRNA sequence
          Length = 964

 Score =  127 bits (64), Expect = 1e-26
 Identities = 113/129 (87%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                       
Query: 29  agcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttctncaggtgctcc 88
           ||||| ||||||||||||||||||||||||||  |||| ||||| ||||  |  || |||
Sbjct: 332 agcttatggatggtctccatgtccacggcctcgccgagggtgcctttctcgacatggtcc 391

                                                                       
Query: 89  caccagcccatgaggaagntgtccaccaccatgcctgaaccagggggacagcttnacccc 148
           |||||||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||
Sbjct: 392 caccagcccatgaggaagttgtccaccacca-gcctgaaccagggggagatcttcacccc 450

                    
Query: 149 gccctcgcc 157
           | |||||||
Sbjct: 451 gtcctcgcc 459
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>gb|AF330034.1| Zea mays isopentenyl pyrophosphate isomerase mRNA, complete cds
          Length = 1095

 Score =  127 bits (64), Expect = 1e-26
 Identities = 113/129 (87%), Gaps = 1/129 (0%)
 Strand = Plus / Minus

                                                                       
Query: 29  agcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttctncaggtgctcc 88
           ||||| ||||||||||||||||||||||||||  |||| ||||| ||||  |  || |||
Sbjct: 797 agcttatggatggtctccatgtccacggcctcgccgagggtgcctttctcgacatggtcc 738

                                                                       
Query: 89  caccagcccatgaggaagntgtccaccaccatgcctgaaccagggggacagcttnacccc 148
           |||||||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||
Sbjct: 737 caccagcccatgaggaagttgtccaccacca-gcctgaaccagggggagatcttcacccc 679

                    
Query: 149 gccctcgcc 157
           | |||||||
Sbjct: 678 gtcctcgcc 670
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>ref|NM_185702.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1101

 Score =  109 bits (55), Expect = 2e-21
 Identities = 108/125 (86%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  gtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttct 77
           ||||| |||| ||||||||||||||||||||||||||||||||   ||| ||||| ||||
Sbjct: 806 gtccttacttcagcttgtggatggtctccatgtccacggcctcgttgagggtgcctttct 747

                                                                       
Query: 78  ncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggac 137
             | ||| ||||||||||||||||||||| |||| || |||| ||| ||||||||| |||
Sbjct: 746 cgacgtgatcccaccagcccatgaggaagttgtcaacaacca-gccggaaccagggagac 688

                
Query: 138 agctt 142
           |||||
Sbjct: 687 agctt 683
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>ref|XM_506401.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1612_A04.101
           mRNA
          Length = 1108

 Score =  109 bits (55), Expect = 2e-21
 Identities = 108/125 (86%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  gtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttct 77
           ||||| |||| ||||||||||||||||||||||||||||||||   ||| ||||| ||||
Sbjct: 813 gtccttacttcagcttgtggatggtctccatgtccacggcctcgttgagggtgcctttct 754

                                                                       
Query: 78  ncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggac 137
             | ||| ||||||||||||||||||||| |||| || |||| ||| ||||||||| |||
Sbjct: 753 cgacgtgatcccaccagcccatgaggaagttgtcaacaacca-gccggaaccagggagac 695

                
Query: 138 agctt 142
           |||||
Sbjct: 694 agctt 690
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>gb|AF188065.1|AF188065 Oryza sativa clone riceipp2 isopentenyl
           pyrophosphate:dimethyllallyl pyrophosphate isomerase
           (ipiOs1) mRNA, partial cds
          Length = 1031

 Score =  109 bits (55), Expect = 2e-21
 Identities = 108/125 (86%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  gtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttct 77
           ||||| |||| ||||||||||||||||||||||||||||||||   ||| ||||| ||||
Sbjct: 769 gtccttacttcagcttgtggatggtctccatgtccacggcctcgttgagggtgcctttct 710

                                                                       
Query: 78  ncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggac 137
             | ||| ||||||||||||||||||||| |||| || |||| ||| ||||||||| |||
Sbjct: 709 cgacgtgatcccaccagcccatgaggaagttgtcaacaacca-gccggaaccagggagac 651

                
Query: 138 agctt 142
           |||||
Sbjct: 650 agctt 646
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  109 bits (55), Expect = 2e-21
 Identities = 108/125 (86%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                            
Query: 18       gtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttct 77
                ||||| |||| ||||||||||||||||||||||||||||||||   ||| ||||| ||||
Sbjct: 21574911 gtccttacttcagcttgtggatggtctccatgtccacggcctcgttgagggtgcctttct 21574852

                                                                            
Query: 78       ncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggac 137
                  | ||| ||||||||||||||||||||| |||| || |||| ||| ||||||||| |||
Sbjct: 21574851 cgacgtgatcccaccagcccatgaggaagttgtcaacaacca-gccggaaccagggagac 21574793

                     
Query: 138      agctt 142
                |||||
Sbjct: 21574792 agctt 21574788
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>dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0006G05
          Length = 56865

 Score =  109 bits (55), Expect = 2e-21
 Identities = 108/125 (86%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                         
Query: 18    gtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttct 77
             ||||| |||| ||||||||||||||||||||||||||||||||   ||| ||||| ||||
Sbjct: 21285 gtccttacttcagcttgtggatggtctccatgtccacggcctcgttgagggtgcctttct 21226

                                                                         
Query: 78    ncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggac 137
               | ||| ||||||||||||||||||||| |||| || |||| ||| ||||||||| |||
Sbjct: 21225 cgacgtgatcccaccagcccatgaggaagttgtcaacaacca-gccggaaccagggagac 21167

                  
Query: 138   agctt 142
             |||||
Sbjct: 21166 agctt 21162
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>dbj|AK065871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044J20, full
           insert sequence
          Length = 1108

 Score =  109 bits (55), Expect = 2e-21
 Identities = 108/125 (86%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  gtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttct 77
           ||||| |||| ||||||||||||||||||||||||||||||||   ||| ||||| ||||
Sbjct: 813 gtccttacttcagcttgtggatggtctccatgtccacggcctcgttgagggtgcctttct 754

                                                                       
Query: 78  ncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggac 137
             | ||| ||||||||||||||||||||| |||| || |||| ||| ||||||||| |||
Sbjct: 753 cgacgtgatcccaccagcccatgaggaagttgtcaacaacca-gccggaaccagggagac 695

                
Query: 138 agctt 142
           |||||
Sbjct: 694 agctt 690
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>dbj|AK061800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H09, full
           insert sequence
          Length = 1101

 Score =  109 bits (55), Expect = 2e-21
 Identities = 108/125 (86%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  gtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttct 77
           ||||| |||| ||||||||||||||||||||||||||||||||   ||| ||||| ||||
Sbjct: 806 gtccttacttcagcttgtggatggtctccatgtccacggcctcgttgagggtgcctttct 747

                                                                       
Query: 78  ncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggac 137
             | ||| ||||||||||||||||||||| |||| || |||| ||| ||||||||| |||
Sbjct: 746 cgacgtgatcccaccagcccatgaggaagttgtcaacaacca-gccggaaccagggagac 688

                
Query: 138 agctt 142
           |||||
Sbjct: 687 agctt 683
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>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1612_A04
          Length = 124833

 Score =  109 bits (55), Expect = 2e-21
 Identities = 108/125 (86%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                        
Query: 18   gtcctcacttgagcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttct 77
            ||||| |||| ||||||||||||||||||||||||||||||||   ||| ||||| ||||
Sbjct: 5367 gtccttacttcagcttgtggatggtctccatgtccacggcctcgttgagggtgcctttct 5308

                                                                        
Query: 78   ncaggtgctcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggac 137
              | ||| ||||||||||||||||||||| |||| || |||| ||| ||||||||| |||
Sbjct: 5307 cgacgtgatcccaccagcccatgaggaagttgtcaacaacca-gccggaaccagggagac 5249

                 
Query: 138  agctt 142
            |||||
Sbjct: 5248 agctt 5244
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>gb|AY110432.1| Zea mays CL141_1 mRNA sequence
          Length = 1413

 Score =  103 bits (52), Expect = 2e-19
 Identities = 90/102 (88%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                       
Query: 29  agcttgtggatggtctccatgtccacggcctccgcgagcgtgcccttctncaggtgctcc 88
           ||||| ||||||||||||||||||||||||||  |||| ||||| ||||  |  || |||
Sbjct: 823 agcttatggatggtctccatgtccacggcctcgccgagggtgcctttctcgacatggtcc 764

                                                     
Query: 89  caccagcccatgaggaagntgtccaccaccatgcctgaacca 130
           |||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 763 caccagcccatgaggaagttgtccaccacca-gcctgaacca 723
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>gb|AY104380.1| Zea mays PCO081637 mRNA sequence
          Length = 1193

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 50/53 (94%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 86  tcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggaca 138
           ||||||||||||||||||||| |||||||||||| |||||||||| |||||||
Sbjct: 872 tcccaccagcccatgaggaagttgtccaccacca-gcctgaaccaaggggaca 821
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>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10,
             complete sequence
          Length = 149870

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                      
Query: 86    tcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggacagctt 142
             |||||||| | |||||||||| |||| || |||| |||| ||||| |||||||||||
Sbjct: 67412 tcccaccatctcatgaggaagttgtcaacaacca-gcctaaaccaaggggacagctt 67357
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                         
Query: 86       tcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggacagctt 142
                |||||||| | |||||||||| |||| || |||| |||| ||||| |||||||||||
Sbjct: 20069087 tcccaccatctcatgaggaagttgtcaacaacca-gcctaaaccaaggggacagctt 20069032
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>dbj|AK099027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124F09, full
           insert sequence
          Length = 989

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                    
Query: 86  tcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggacagctt 142
           |||||||| | |||||||||| |||| || |||| |||| ||||| |||||||||||
Sbjct: 867 tcccaccatctcatgaggaagttgtcaacaacca-gcctaaaccaaggggacagctt 812
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>dbj|AK060336.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C05, full
           insert sequence
          Length = 1082

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                    
Query: 86  tcccaccagcccatgaggaagntgtccaccaccatgcctgaaccagggggacagctt 142
           |||||||| | |||||||||| |||| || |||| |||| ||||| |||||||||||
Sbjct: 912 tcccaccatctcatgaggaagttgtcaacaacca-gcctaaaccaaggggacagctt 857
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>gb|AC111129.12| Mus musculus chromosome 5, clone RP23-339H11, complete sequence
          Length = 196458

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 117   ccatgcctgaaccagggggacagct 141
             ||||||||||||| |||||||||||
Sbjct: 25459 ccatgcctgaacctgggggacagct 25435
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>ref|XM_973087.1| PREDICTED: Mus musculus hypothetical protein LOC669108 (LOC669108),
           mRNA
          Length = 3195

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 117 ccatgcctgaaccagggggacagct 141
           ||||||||||||| |||||||||||
Sbjct: 196 ccatgcctgaacctgggggacagct 172
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>ref|XM_355598.4| PREDICTED: Mus musculus gene model 1043, (NCBI) (Gm1043), mRNA
          Length = 3033

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 117 ccatgcctgaaccagggggacagct 141
           ||||||||||||| |||||||||||
Sbjct: 196 ccatgcctgaacctgggggacagct 172
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>ref|XM_989078.1| PREDICTED: Mus musculus hypothetical protein LOC676322 (LOC676322),
           mRNA
          Length = 3405

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 117 ccatgcctgaaccagggggacagct 141
           ||||||||||||| |||||||||||
Sbjct: 568 ccatgcctgaacctgggggacagct 544
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>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence
          Length = 197964

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 117    ccatgcctgaaccagggggacagct 141
              ||||||||||||| |||||||||||
Sbjct: 152430 ccatgcctgaacctgggggacagct 152406
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>ref|NM_190847.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1692

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tgtccacggcctccgcgagc 67
           ||||||||||||||||||||
Sbjct: 682 tgtccacggcctccgcgagc 663
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>gb|AC011296.3| Homo sapiens BAC clone RP11-96K1 from 7, complete sequence
          Length = 130513

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caggtgctcccaccagccca 98
             ||||||||||||||||||||
Sbjct: 71909 caggtgctcccaccagccca 71890
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>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence
          Length = 158384

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ctgaaccagggggacagctt 142
             ||||||||||||||||||||
Sbjct: 77301 ctgaaccagggggacagctt 77282
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       tgtccacggcctccgcgagc 67
                ||||||||||||||||||||
Sbjct: 33447380 tgtccacggcctccgcgagc 33447361
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>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0415A04
          Length = 160669

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     tgtccacggcctccgcgagc 67
              ||||||||||||||||||||
Sbjct: 123546 tgtccacggcctccgcgagc 123527
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>dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N03, full
           insert sequence
          Length = 1849

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tgtccacggcctccgcgagc 67
           ||||||||||||||||||||
Sbjct: 688 tgtccacggcctccgcgagc 669
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>dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H03, full
           insert sequence
          Length = 1859

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tgtccacggcctccgcgagc 67
           ||||||||||||||||||||
Sbjct: 688 tgtccacggcctccgcgagc 669
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 45      ccatgtccacggcctccgcgagcgtgcc 72
               ||||| ||||||| ||||||||||||||
Sbjct: 2929938 ccatggccacggcgtccgcgagcgtgcc 2929911
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>gb|AC130658.36| Mus musculus chromosome 1, clone RP23-309D5, complete sequence
          Length = 184094

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 30   gcttgtggatggtctccat 48
            |||||||||||||||||||
Sbjct: 4963 gcttgtggatggtctccat 4945
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>ref|XM_368481.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00763.4) partial mRNA
          Length = 2661

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  cttgagcttgtggatggtc 43
           |||||||||||||||||||
Sbjct: 378 cttgagcttgtggatggtc 360
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>ref|XM_603916.2| PREDICTED: Bos taurus similar to E-1 enzyme, transcript variant 1
           (LOC525563), mRNA
          Length = 1936

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  cttgagcttgtggatggtc 43
           |||||||||||||||||||
Sbjct: 717 cttgagcttgtggatggtc 735
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>ref|XM_876153.1| PREDICTED: Bos taurus similar to E-1 enzyme, transcript variant 3
           (LOC525563), mRNA
          Length = 1378

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  cttgagcttgtggatggtc 43
           |||||||||||||||||||
Sbjct: 159 cttgagcttgtggatggtc 177
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>gb|AC008074.3| Homo sapiens BAC clone RP11-568N6 from 2, complete sequence
          Length = 198087

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 108   tgtccaccaccatgcctga 126
             |||||||||||||||||||
Sbjct: 23626 tgtccaccaccatgcctga 23644
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>emb|CR702802.2|CNS0G58E Tetraodon nigroviridis full-length cDNA
          Length = 1067

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 84  gctcccaccagcccatgaggaag 106
           ||||||||||||||| |||||||
Sbjct: 786 gctcccaccagcccaggaggaag 764
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>emb|CR691373.2|CNS0FWEX Tetraodon nigroviridis full-length cDNA
          Length = 1059

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 84  gctcccaccagcccatgaggaag 106
           ||||||||||||||| |||||||
Sbjct: 777 gctcccaccagcccaggaggaag 755
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>emb|CR687497.2|CNS0FTF9 Tetraodon nigroviridis full-length cDNA
          Length = 1062

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 84  gctcccaccagcccatgaggaag 106
           ||||||||||||||| |||||||
Sbjct: 787 gctcccaccagcccaggaggaag 765
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>emb|AL391383.15| Human DNA sequence from clone RP11-532O21 on chromosome 13 Contains the
             5' of the gene for transcription factor (p38 interacting
             protein) (P38IP) (tumor rejection antigen), the gene for a
             novel protein similar to casein kinase I alpha 1 CSNK1A1
             and a CpG island, complete sequence
          Length = 98921

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 104   aagntgtccaccaccatgcctg 125
             ||| ||||||||||||||||||
Sbjct: 65692 aaggtgtccaccaccatgcctg 65713
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>gb|AC087499.12| Homo sapiens chromosome 17, clone RP11-218E15, complete sequence
          Length = 195591

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 104  aagntgtccaccaccatgcctg 125
            ||| ||||||||||||||||||
Sbjct: 2723 aagttgtccaccaccatgcctg 2702
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>gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosome 12, complete
             sequence
          Length = 175716

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 104   aagntgtccaccaccatgcctg 125
             ||| ||||||||||||||||||
Sbjct: 76511 aaggtgtccaccaccatgcctg 76490
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>emb|AL732556.7| Mouse DNA sequence from clone RP24-144L11 on chromosome 4 Contains the
             Tnc gene for tenascin C, the 5' end of a novel gene and a
             novel gene, complete sequence
          Length = 148021

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   tgtccaccaccatgcctga 126
             |||||||||||||||||||
Sbjct: 16181 tgtccaccaccatgcctga 16163
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>gb|AC108210.4| Homo sapiens BAC clone RP11-457P14 from 4, complete sequence
          Length = 123377

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   tgtccaccaccatgcctga 126
             |||||||||||||||||||
Sbjct: 96534 tgtccaccaccatgcctga 96516
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>gb|AC087600.21| Homo sapiens 12q BAC RP11-495C23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185454

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    ccaccatgcctgaaccagg 132
              |||||||||||||||||||
Sbjct: 155827 ccaccatgcctgaaccagg 155809
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>tpg|BK001591.1| TPA: TPA_exp: Homo sapiens chromosome 17 proximal SMS-REP low-copy
              repeat, genomic sequence
          Length = 255901

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 104    aagntgtccaccaccatgcctg 125
              ||| ||||||||||||||||||
Sbjct: 220634 aagttgtccaccaccatgcctg 220613
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>tpg|BK001590.1| TPA: TPA_exp: Homo sapiens chromosome 17 middle SMS-REP low-copy
             repeat, genomic sequence
          Length = 240806

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 104   aagntgtccaccaccatgcctg 125
             ||| ||||||||||||||||||
Sbjct: 19875 aagttgtccaccaccatgcctg 19896
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 43       ctccatgtccacggcctccgcga 65
                ||||||| |||||||||||||||
Sbjct: 20944273 ctccatggccacggcctccgcga 20944295
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 50     tccacggcctccgcgagcg 68
              |||||||||||||||||||
Sbjct: 746822 tccacggcctccgcgagcg 746804
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>gb|AC149053.3| Mus musculus BAC clone RP24-502E20 from chromosome 7, complete sequence
          Length = 221785

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    ctcccaccagcccatgagg 103
             |||||||||||||||||||
Sbjct: 86451 ctcccaccagcccatgagg 86469
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>gb|AC015818.32| Homo sapiens chromosome 17, clone RP11-434D2, complete sequence
          Length = 194767

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 104    aagntgtccaccaccatgcctg 125
              ||| ||||||||||||||||||
Sbjct: 155490 aagttgtccaccaccatgcctg 155469
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>gb|AC079044.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-51l7, complete
              sequence
          Length = 228349

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    caccaccatgcctgaacca 130
              |||||||||||||||||||
Sbjct: 120227 caccaccatgcctgaacca 120209
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>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1274F11
          Length = 171257

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 43    ctccatgtccacggcctccgcga 65
             ||||||| |||||||||||||||
Sbjct: 36362 ctccatggccacggcctccgcga 36384
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>dbj|BS000171.1| Pan troglodytes chromosome 22 clone:PTB-086M04, map 22, complete
             sequences
          Length = 218680

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   tgtccaccaccatgcctga 126
             |||||||||||||||||||
Sbjct: 26193 tgtccaccaccatgcctga 26175
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>dbj|BS000157.1| Pan troglodytes chromosome 22 clone:RP43-154K22, map 22, complete
             sequences
          Length = 192836

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   tgtccaccaccatgcctga 126
             |||||||||||||||||||
Sbjct: 34883 tgtccaccaccatgcctga 34865
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>gb|AC157563.12| Mus musculus chromosome 7, clone RP23-414I24, complete sequence
          Length = 200040

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    caccaccatgcctgaacca 130
              |||||||||||||||||||
Sbjct: 108520 caccaccatgcctgaacca 108502
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>emb|AL353997.3|HS37N07 Homo sapiens chromosome 17 from PAC  RPCI-1 37N07 map 17p11.2 region
             D17S842-D17S953, complete sequence
          Length = 175103

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 104   aagntgtccaccaccatgcctg 125
             ||| ||||||||||||||||||
Sbjct: 73747 aagttgtccaccaccatgcctg 73768
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>gb|AC087802.13| Mus musculus strain C57BL/6J chromosome 16 clone rp23-472f15, complete
              sequence
          Length = 187260

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    caccaccatgcctgaacca 130
              |||||||||||||||||||
Sbjct: 106313 caccaccatgcctgaacca 106295


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,291,514
Number of Sequences: 3902068
Number of extensions: 1291514
Number of successful extensions: 149832
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 149534
Number of HSP's gapped (non-prelim): 304
length of query: 157
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 135
effective length of database: 17,147,199,772
effective search space: 2314871969220
effective search space used: 2314871969220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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