ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17c10 |
|---|---|
| Clone Library Name | barley_pub |
>VATH_ARATH (Q9LX65) Probable vacuolar ATP synthase subunit H (EC 3.6.3.14)| (V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 441 Score = 172 bits (436), Expect = 6e-43 Identities = 77/103 (74%), Positives = 96/103 (93%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 PMHK+ NFWREN+T FEENDFQILRVL+T++DTS+D +LAVAC+D+SQF+QYH +GR++ Sbjct: 338 PMHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVI 397 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFLGAKYASFLQ 270 VADLKAK+RVMKL+NH+NAEV KN++LC+QRL LGAKYASFLQ Sbjct: 398 VADLKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQ 440
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 88.6 bits (218), Expect = 1e-17 Identities = 38/94 (40%), Positives = 61/94 (64%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P+HK FWREN E ++LR L+ +++ S D LAVACYD+ ++++++P G+ + Sbjct: 355 PVHKSAKFWRENAARLNERGQELLRTLVHLLEKSHDPVVLAVACYDVGEYVRHYPRGKHI 414 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 + L K RVM L++HD+ VR +LL VQ+L + Sbjct: 415 IEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMV 448
>VATH_DROME (Q9V3J1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 468 Score = 85.5 bits (210), Expect = 1e-16 Identities = 35/94 (37%), Positives = 63/94 (67%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P+HK FWREN E ++++LR+L+ +++TS D L+VAC+D+ ++++++P G+ V Sbjct: 347 PVHKSAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHYPRGKHV 406 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 + L K VM+ + H++ VR +LL VQ+L + Sbjct: 407 LEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMV 440
>VATH_PIG (Q9TVC1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 85.1 bits (209), Expect = 1e-16 Identities = 35/94 (37%), Positives = 62/94 (65%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P+HK FWREN E ++++L++L +++ S D LAVA +D+ ++++++P G+ V Sbjct: 368 PVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRV 427 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 + L K VM M+H++ +VR N+LL VQ+L + Sbjct: 428 IEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_MOUSE (Q8BVE3) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) Length = 483 Score = 85.1 bits (209), Expect = 1e-16 Identities = 35/94 (37%), Positives = 62/94 (65%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P+HK FWREN E ++++L++L +++ S D LAVA +D+ ++++++P G+ V Sbjct: 368 PVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRV 427 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 + L K VM M+H++ +VR N+LL VQ+L + Sbjct: 428 IEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_HUMAN (Q9UI12) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) (VMA13) (Nef-binding protein 1) (NBP1) Length = 483 Score = 85.1 bits (209), Expect = 1e-16 Identities = 35/94 (37%), Positives = 62/94 (65%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P+HK FWREN E ++++L++L +++ S D LAVA +D+ ++++++P G+ V Sbjct: 368 PVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRV 427 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 + L K VM M+H++ +VR N+LL VQ+L + Sbjct: 428 IEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_BOVIN (O46563) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 84.3 bits (207), Expect = 2e-16 Identities = 35/94 (37%), Positives = 62/94 (65%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P+HK FWREN E ++++L++L +++ S D LAVA +D+ ++++++P G+ V Sbjct: 368 PVHKSEKFWRENPARLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRV 427 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 + L K VM M+H++ +VR N+LL VQ+L + Sbjct: 428 IEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH2_CAEEL (Q22494) Probable vacuolar ATP synthase subunit H 2 (EC 3.6.3.14)| (V-ATPase H subunit 2) (Vacuolar proton pump H subunit 2) (Vacuolar proton pump subunit SFD 2) Length = 470 Score = 80.5 bits (197), Expect = 3e-15 Identities = 32/94 (34%), Positives = 63/94 (67%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P+HK FWREN + F + F+++++L+ ++++S D L VA +D+ ++++++P G+ V Sbjct: 355 PVHKSEKFWRENASKFNDKQFEVVKILIKLLESSHDPLILCVASHDIGEYVRHYPRGKTV 414 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 V + K VM+L+ ++ VR ++LL VQ+L + Sbjct: 415 VEQYQGKAAVMRLLTAEDPNVRYHALLAVQKLMV 448
>VATH_SCHPO (O14265) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 450 Score = 78.2 bits (191), Expect = 2e-14 Identities = 34/92 (36%), Positives = 57/92 (61%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P H+ +FW +N E+++ +L+ L ++ + D T+LAVAC+DL +++ +P GR + Sbjct: 347 PSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNEDNTSLAVACHDLGAYIRSYPEGRSL 406 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRL 303 + AK R+M LM+H + EVR +L VQ L Sbjct: 407 IIKYGAKQRIMDLMSHPDPEVRFEALSTVQLL 438
>VATH1_CAEEL (Q20666) Probable vacuolar ATP synthase subunit H 1 (EC 3.6.3.14)| (V-ATPase H subunit 1) (Vacuolar proton pump H subunit 1) (Vacuolar proton pump subunit SFD 1) Length = 451 Score = 72.4 bits (176), Expect = 9e-13 Identities = 32/94 (34%), Positives = 57/94 (60%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLV 399 P HK FW EN +N ++L++L+ +++ S D L VA +D+ +F++Y+P G+L Sbjct: 348 PAHKCEVFWNENAHRLNDNRQELLKLLVAMLEKSNDPLVLCVAAHDIGEFVRYYPRGKLK 407 Query: 398 VADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 V L K+ +M+L+ + VR ++LL Q+L + Sbjct: 408 VEQLGGKEAMMRLLTVKDPNVRYHALLAAQKLMI 441
>VATH_YEAST (P41807) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 478 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%) Frame = -2 Query: 578 PMHKDPNFWRENITNFEENDFQILRVLMTV---------IDTSTDTTALAVACYDLSQFL 426 P H D FW +NI F++++++I R L+ + ++ + + VA D++ + Sbjct: 372 PPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 431 Query: 425 QYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRL 303 + P V+ K +M+L+NH ++ V+ +L Q + Sbjct: 432 ELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 472
>CYB52_SCHPO (Q9USM6) Probable cytochrome b5 2| Length = 129 Score = 30.8 bits (68), Expect = 2.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 446 YDLSQFLQYHPSGRLVVADLKAKD 375 YD+S+FL HP G V+ DL +D Sbjct: 29 YDISKFLDAHPGGEEVLVDLAGRD 52
>MIP1_SCHPO (P87141) WD-repeat protein mip1| Length = 1313 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/95 (21%), Positives = 45/95 (47%) Frame = -2 Query: 515 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 336 QIL ++ +S + A+ + LS F + P G+L + + + +N ++ + Sbjct: 578 QILNPNSSIFPSSNISEHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSPDSLL 637 Query: 335 RKNSLLCVQRLFLGAKYASFLQV*DHKVLYLYEVL 231 R+ + LC+ +L+ A + D+ + L E++ Sbjct: 638 RQWACLCISQLWENYSEAKWSGTRDNAHVKLAEII 672
>UVRB_PROMT (Q46IE1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 678 Score = 29.6 bits (65), Expect = 6.5 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +1 Query: 214 MGFGGSNTSYKYKTLWSYTCRKLAYLAPRKSL----CTQSREFFLTSALSWFMSF 366 +G G+ ++ L + T R LA K+L C + REFF +A+ +F+S+ Sbjct: 37 LGATGTGKTFTIANLIAQTGRPALVLAHNKTLAAQLCNELREFFPDNAVEYFISY 91
>UVRB_CARHZ (Q3AFF4) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 662 Score = 29.3 bits (64), Expect = 8.5 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +1 Query: 214 MGFGGSNTSYKYKTLWSYTCRKLAYLAPRKSL----CTQSREFFLTSALSWFMSF 366 +G GS ++ + + + +AP K+L C + REFF +A+ +F+S+ Sbjct: 37 LGVTGSGKTFTMANVIANVNKPTLVIAPNKTLAAQLCAEFREFFPENAVEYFVSY 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,171,019 Number of Sequences: 219361 Number of extensions: 1443062 Number of successful extensions: 3846 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3846 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
