ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16n05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EPO_MACMU (Q28513) Erythropoietin precursor 30 5.7
2ISPE_NOCFA (Q5YPY8) 4-diphosphocytidyl-2-C-methyl-D-erythritol k... 30 5.7
3EPO_MACFA (P07865) Erythropoietin precursor 29 7.5
4EPO_HUMAN (P01588) Erythropoietin precursor (Epoetin) 29 9.7

>EPO_MACMU (Q28513) Erythropoietin precursor|
          Length = 192

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
 Frame = -2

Query: 348 WLWLWLSLINYSIGL------LDLVCDARV 277
           WLWL LSL++  +GL        LVCD+RV
Sbjct: 9   WLWLLLSLVSLPLGLPVPGAPPRLVCDSRV 38



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>ISPE_NOCFA (Q5YPY8) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 307

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 453 LWDDGVGADEISAQPAALGS 512
           LWD G+G DE+SA  A LGS
Sbjct: 123 LWDMGLGRDELSALAAELGS 142



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>EPO_MACFA (P07865) Erythropoietin precursor|
          Length = 192

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
 Frame = -2

Query: 348 WLWLWLSLINYSIGL------LDLVCDARV 277
           WLWL LSL++  +GL        L+CD+RV
Sbjct: 9   WLWLLLSLVSLPLGLPVPGAPPRLICDSRV 38



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>EPO_HUMAN (P01588) Erythropoietin precursor (Epoetin)|
          Length = 193

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
 Frame = -2

Query: 348 WLWLWLSLINYSIGL------LDLVCDARV 277
           WLWL LSL++  +GL        L+CD+RV
Sbjct: 9   WLWLLLSLLSLPLGLPVLGAPPRLICDSRV 38


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,951,407
Number of Sequences: 219361
Number of extensions: 1106256
Number of successful extensions: 2403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2403
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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