ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal16m18 |
|---|---|
| Clone Library Name | barley_pub |
>AMO_LENCU (P49252) Amine oxidase [copper-containing] precursor (EC 1.4.3.6)| (Fragment) Length = 667 Score = 83.2 bits (204), Expect = 3e-16 Identities = 33/58 (56%), Positives = 44/58 (75%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILKQRPTMEKDLPVC 272 NKD+V+W+ +G HH+P QEDFPIMP +S+SF+L+P NFFE NP+LK P + P C Sbjct: 608 NKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLPPRDFTWPGC 665
>AMO_PEA (Q43077) Amine oxidase [copper-containing] precursor (EC 1.4.3.6)| Length = 674 Score = 80.1 bits (196), Expect = 2e-15 Identities = 32/58 (55%), Positives = 43/58 (74%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILKQRPTMEKDLPVC 272 NKD+V+W+ +G HH+P QEDFPIMP +S+SF+L+P NFFE NP+LK + P C Sbjct: 615 NKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 672
>AMO_SCHPO (O42890) Putative copper amine oxidase (EC 1.4.3.6)| Length = 794 Score = 55.5 bits (132), Expect = 6e-08 Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 311 N D+V+W+T G H P EDFPIMP S L+P NFF+ NP L Sbjct: 591 NTDIVVWHTFGMIHFPAPEDFPIMPAESIHLFLQPRNFFKHNPAL 635
>AMOH_ARTGO (Q59118) Histamine oxidase (EC 1.4.3.6) (Copper amine oxidase)| Length = 683 Score = 53.5 bits (127), Expect = 2e-07 Identities = 22/44 (50%), Positives = 30/44 (68%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 311 +DLV+W++ G H P ED+PIMP ++ F LKP FF+ NP L Sbjct: 599 QDLVVWHSFGLTHFPRPEDWPIMPVDTTGFTLKPHGFFDENPTL 642
>AMO2_ARTS1 (Q07123) Copper methylamine oxidase precursor (EC 1.4.3.6) (MAOXII)| Length = 648 Score = 53.1 bits (126), Expect = 3e-07 Identities = 22/43 (51%), Positives = 28/43 (65%) Frame = -3 Query: 439 DLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 311 DLV+WYT G HH+ ED+P+MP + F L+P FF NP L Sbjct: 584 DLVVWYTFGMHHVVRLEDWPVMPRQNIGFMLEPHGFFNQNPTL 626
>AMO1_ARTS1 (Q07121) Copper amine oxidase precursor (EC 1.4.3.6) (MAOXI)| Length = 648 Score = 53.1 bits (126), Expect = 3e-07 Identities = 22/43 (51%), Positives = 28/43 (65%) Frame = -3 Query: 439 DLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 311 DLV+WYT G HH+ ED+P+MP + F L+P FF NP L Sbjct: 584 DLVVWYTFGMHHVVRLEDWPVMPRQNIGFMLEPHGFFNQNPTL 626
>PAOX_ARTGO (P46881) Phenylethylamine oxidase precursor (EC 1.4.3.6) (Amine| oxidase) Length = 638 Score = 51.2 bits (121), Expect = 1e-06 Identities = 20/44 (45%), Positives = 30/44 (68%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 311 +D+V+W+T G H P ED+PIMP + F L+P FF+ +P+L Sbjct: 580 QDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>ABP1_HUMAN (P19801) Amiloride-sensitive amine oxidase [copper-containing]| precursor (EC 1.4.3.6) (Diamine oxidase) (DAO) (Amiloride-binding protein) (ABP) (Histaminase) (Kidney amine oxidase) (KAO) Length = 751 Score = 50.4 bits (119), Expect = 2e-06 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSSS--FDLKPVNFFESNPILKQRPTM 293 N+DLV W T+GF HIP ED P T +S F L+P NFF +P L R T+ Sbjct: 662 NEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTV 714
>ABP1_MOUSE (Q8JZQ5) Amiloride-sensitive amine oxidase [copper-containing]| precursor (EC 1.4.3.6) (Diamine oxidase) (DAO) (Amiloride-binding protein) (ABP) (Histaminase) Length = 751 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNPILKQRPTM 293 N+DLV W T+GF HIP ED P T + F ++P NFFE +P L R T+ Sbjct: 662 NEDLVAWVTVGFLHIPHSEDVPNTATPGNCVGFLIRPFNFFEEDPSLASRDTV 714
>ABP1_RAT (P36633) Amiloride-sensitive amine oxidase [copper-containing]| precursor (EC 1.4.3.6) (Diamine oxidase) (DAO) (Amiloride-binding protein) (ABP) (Histaminase) Length = 746 Score = 48.1 bits (113), Expect = 1e-05 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSSS--FDLKPVNFFESNPILKQRPTM 293 ++DLV W T+GF HIP ED P T +S F L+P NFF +P L R T+ Sbjct: 657 DEDLVAWVTVGFLHIPHSEDVPNTATPGNSVGFLLRPFNFFPEDPSLASRDTV 709
>AMO_PICAN (P12807) Peroxisomal copper amine oxidase (EC 1.4.3.6) (Methylamine| oxidase) Length = 692 Score = 47.4 bits (111), Expect = 2e-05 Identities = 20/50 (40%), Positives = 30/50 (60%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILKQRPT 296 N D++ ++T G H P EDFP+MP + L+P +FF NP L +P+ Sbjct: 611 NTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPS 660
>AOC3_PONPY (Q5R9I0) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 762 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 317 KDLV W T GF HIP ED P TV + F L+P NFF+ +P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 714
>AOC3_HUMAN (Q16853) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) (HPAO) Length = 762 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 317 KDLV W T GF HIP ED P TV + F L+P NFF+ +P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 714
>AOC3_BOVIN (Q9TTK6) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 762 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 317 KDLV W T GF HIP ED P TV + F L+P NFF+ +P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 714
>AOCY_BOVIN (O46406) Copper amine oxidase, lung isozyme precursor (EC 1.4.3.6)| (Amine oxidase [copper-containing]) (BOLAO) Length = 762 Score = 45.8 bits (107), Expect = 5e-05 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 317 KDLV W T GF HIP ED P TV + F L+P NFF+ P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEP 714
>AOCX_BOVIN (Q29437) Copper amine oxidase, liver isozyme precursor (EC 1.4.3.6)| (Amine oxidase [copper-containing]) (Serum amine oxidase) (SAO) Length = 762 Score = 45.8 bits (107), Expect = 5e-05 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 317 KDLV W T GF HIP ED P TV + F L+P NFF+ P Sbjct: 671 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEP 714
>AOC3_MOUSE (O70423) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 764 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSSS--FDLKPVNFFESNP 317 +DLV W T GF HIP ED P T +S F L+P NFF+ +P Sbjct: 671 EDLVAWVTAGFLHIPHAEDIPNTVTAGNSVGFFLRPYNFFDEDP 714
>AOC3_RAT (O08590) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) (VP97) Length = 762 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 317 +DLV W T GF HIP ED P TV + F L+P NFF+ +P Sbjct: 671 EDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 714
>AMO_KLEAE (P49250) Copper amine oxidase precursor (EC 1.4.3.6) (Monamine| oxidase) (Tyramine oxidase) Length = 755 Score = 44.3 bits (103), Expect = 1e-04 Identities = 21/48 (43%), Positives = 29/48 (60%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILKQR 302 N D V+W T G H+ E++PIMPT + LKP NFF+ P L ++ Sbjct: 706 NHDDVVWITTGTTHVARAEEWPIMPTEWALALLKPWNFFDETPTLGEK 753
>AMO_ECOLI (P46883) Copper amine oxidase precursor (EC 1.4.3.6) (Tyramine| oxidase) (2-phenylethylamine oxidase) Length = 757 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/45 (46%), Positives = 26/45 (57%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 311 N D V+W T G H+ E++PIMPT LKP NFF+ P L Sbjct: 706 NTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 750
>AMO1_ASPNG (Q12556) Copper amine oxidase 1 (EC 1.4.3.6)| Length = 671 Score = 43.5 bits (101), Expect = 2e-04 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = -3 Query: 439 DLVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 311 D+V+W T G H P ED+P+MP ++P +FF +NP L Sbjct: 606 DVVVWSTFGITHNPRVEDWPVMPVEIFQLMIRPADFFTANPSL 648
>AOC2_MOUSE (Q812C9) Retina-specific copper amine oxidase precursor (EC| 1.4.3.6) (RAO) (Amine oxidase [copper-containing]) Length = 757 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 317 +DLV W T F HIP ED P TV + F L+P NFF +P Sbjct: 669 EDLVAWVTASFLHIPHAEDIPNTVTVGNRVGFLLRPYNFFNEDP 712
>AOC2_HUMAN (O75106) Retina-specific copper amine oxidase precursor (EC| 1.4.3.6) (RAO) (Amine oxidase [copper-containing]) Length = 756 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -3 Query: 442 KDLVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFESNP 317 +DLV W T F HIP ED P T+ + F L+P NFF+ +P Sbjct: 668 EDLVAWVTASFLHIPHAEDIPNTVTLGNRVGFLLRPYNFFDEDP 711
>R1AB_CVMJD (P26627) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28-p210 fusion] (Fragment) Length = 500 Score = 32.0 bits (71), Expect = 0.71 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +2 Query: 209 IPVLYVESTHVLWCMFSRGSDADGEILLHGGSLLEDGVALEEVDRLEVE 355 +PV +T V++ ++ DAD ++L + EDGVA E+VD + E Sbjct: 212 MPVYDFNATDVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSE 260
>PURU_CORS1 (Q46339) Formyltetrahydrofolate deformylase (EC 3.5.1.10)| (Formyl-FH(4) hydrolase) Length = 286 Score = 32.0 bits (71), Expect = 0.71 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 Query: 445 NKDLVLWYTLGFHHIPCQED 386 ++ LV WY +GFHHIP +D Sbjct: 129 HRSLVEWYGIGFHHIPISKD 148
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 31.6 bits (70), Expect = 0.93 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +2 Query: 230 STHVLWCMFSRGSDADGEILLHGGSLLEDGVALEEVDRLEVE-AGRHSGHDGEVLLTRDV 406 +T V++ ++ DAD ++L + EDGVA E+VD + E H+G G+ + DV Sbjct: 950 ATDVVYADENQDDDADDPVVLVADTQEEDGVAREQVDSADSEICVAHTG--GQEMTEPDV 1007 Query: 407 VEPQ 418 V Q Sbjct: 1008 VGSQ 1011
>NADB_PYRHO (O57765) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 464 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = +2 Query: 221 YVESTHVLWCMFSRGSDADGEILLHG----GSLLEDGVALEEVDRLEVEAGRH 367 Y+ ++W + S+ S+A + HG G+ LE G + + ++ E G+H Sbjct: 71 YINDEEIVWNVISKSSEAHDFLTSHGVTFTGNELEGGHSYPRIFTIKSETGKH 123
>GSPF_PSEAE (Q00513) General secretion pathway protein F| Length = 405 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +2 Query: 299 GSLLEDGVALEEVDRLEVEAGRHSGHDGEVL 391 GSL E A E+ R V AG H+GH G VL Sbjct: 120 GSLREFPTAFPELYRATVAAGEHAGHLGPVL 150
>MLTA_ECOLI (P0A935) Membrane-bound lytic murein transglycosylase A precursor| (EC 3.2.1.-) (Murein hydrolase A) (Mlt38) Length = 365 Score = 29.3 bits (64), Expect = 4.6 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 10/46 (21%) Frame = -3 Query: 238 MCALDV------QHWDVARGMRSCVGFR----NHHGVSSILKLAPG 131 M ALDV QH+D+ +G+ G R NH+G +LK APG Sbjct: 313 MVALDVGGAIKGQHFDIYQGIGPEAGHRAGWYNHYGRVWVLKTAPG 358
>MLTA_ECO57 (P0A936) Membrane-bound lytic murein transglycosylase A precursor| (EC 3.2.1.-) (Murein hydrolase A) (Mlt38) Length = 365 Score = 29.3 bits (64), Expect = 4.6 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 10/46 (21%) Frame = -3 Query: 238 MCALDV------QHWDVARGMRSCVGFR----NHHGVSSILKLAPG 131 M ALDV QH+D+ +G+ G R NH+G +LK APG Sbjct: 313 MVALDVGGAIKGQHFDIYQGIGPEAGHRAGWYNHYGRVWVLKTAPG 358
>NADB_PYRAB (Q9V2R0) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 464 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +2 Query: 221 YVESTHVLWCMFSRGSDADGEILLHG----GSLLEDGVALEEVDRLEVEAGRH 367 Y+ V+W + S+ ++A ++ HG G+ LE G + V ++ E G+H Sbjct: 71 YINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSETGKH 123
>AXE1_TRIRE (Q99034) Acetylxylan esterase precursor (EC 3.1.1.72)| Length = 302 Score = 29.3 bits (64), Expect = 4.6 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = +1 Query: 109 TEARLGKSPAPTSVYWTHHGDSGSLRTTSC 198 T R G SP PT +W G G T C Sbjct: 256 TSTRTGSSPGPTQTHWGQCGGQGWTGPTQC 285
>CLPB_CHRVO (Q7NWN7) Chaperone clpB| Length = 859 Score = 28.9 bits (63), Expect = 6.0 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +2 Query: 221 YVESTHVLWCMFSRGSDADGEILLHGG---SLLEDGVALEEVDRLEVEAGRHSGHDGEVL 391 Y+E H+L M G +L G L+ G+ + +DRL R GH GE+ Sbjct: 28 YIEPQHLLLAMLDDAEAGVGGLLARAGVNVPALKAGLK-QAIDRLP----RVQGHGGEIT 82 Query: 392 LTRDV 406 ++RD+ Sbjct: 83 VSRDL 87
>MT_PARLI (P80367) Metallothionein (MT)| Length = 65 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +3 Query: 207 TSQCCTSRAHMYCGACSHAVATQTG 281 T +CC A + CG CS+A TG Sbjct: 24 TGKCCKDGASVCCGTCSNAACKCTG 48
>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)| Length = 544 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%) Frame = -1 Query: 438 TWC--CGTRWGSTTSLVRRTSPSCPLC 364 T+C C RW S T R S SCP C Sbjct: 374 TYCLRCIRRWRSATQFENRISKSCPQC 400 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,177,421 Number of Sequences: 219361 Number of extensions: 1724304 Number of successful extensions: 5192 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5181 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
