ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6n03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 7e-15
2ref|XM_450237.1| Oryza sativa (japonica cultivar-group), mRNA 72 4e-10
3ref|XM_507425.1| PREDICTED Oryza sativa (japonica cultivar-group... 72 4e-10
4ref|XM_506638.2| PREDICTED Oryza sativa (japonica cultivar-group... 72 4e-10
5dbj|AK104787.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 4e-10
6dbj|AK101447.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 4e-10
7dbj|AK067016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 4e-10
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
9dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
10dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
11dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
12dbj|AP005550.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
13gb|AC162916.3| Mus musculus BAC clone RP23-395G18 from chromosom... 38 5.7
14gb|AC027761.6| Homo sapiens chromosome 8, clone RP11-655E7, comp... 38 5.7
15gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 38 5.7
16gb|AC018377.6|AC018377 Homo sapiens, clone RP11-4C16, complete s... 38 5.7

>dbj|AK067408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F13, full
           insert sequence
          Length = 3080

 Score = 87.7 bits (44), Expect = 7e-15
 Identities = 101/122 (82%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaaaggcgacagatacacggtancgaggggagttgntgacnactctntgcagcgtggg 60
           ||||||||| |||||||||||||| |||||||| ||| | || ||||  || || || ||
Sbjct: 897 gaaaaaggcaacagatacacggtaacgaggggaattgttaacaactcgatgaagtgttgg 838

                                                                       
Query: 61  ctggtatntcccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120
            || ||| | ||||| ||||| ||||||| |||||  ||||||||||| |||||||||||
Sbjct: 837 ttgatatattccatttgaccaaaccttcagcatgtcaccaatgttgcagacgaaggttcc 778

             
Query: 121 cg 122
           ||
Sbjct: 777 cg 776



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>ref|XM_450237.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1226

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 11  acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70
           |||||||||||||| |||||||||||| | || ||||  || || || ||||| ||| | 
Sbjct: 993 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 934

                                                             
Query: 71  ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120
           || || ||||| ||||||| |||||  || |||||||| |||||||||||
Sbjct: 933 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 884



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>ref|XM_507425.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0069P02.20
           mRNA
          Length = 1276

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 11  acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70
           |||||||||||||| |||||||||||| | || ||||  || || || ||||| ||| | 
Sbjct: 999 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 940

                                                             
Query: 71  ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120
           || || ||||| ||||||| |||||  || |||||||| |||||||||||
Sbjct: 939 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 890



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>ref|XM_506638.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0069P02.20
           mRNA
          Length = 1285

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 11  acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70
           |||||||||||||| |||||||||||| | || ||||  || || || ||||| ||| | 
Sbjct: 997 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 938

                                                             
Query: 71  ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120
           || || ||||| ||||||| |||||  || |||||||| |||||||||||
Sbjct: 937 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 888



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>dbj|AK104787.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E01, full
           insert sequence
          Length = 1226

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 11  acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70
           |||||||||||||| |||||||||||| | || ||||  || || || ||||| ||| | 
Sbjct: 993 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 934

                                                             
Query: 71  ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120
           || || ||||| ||||||| |||||  || |||||||| |||||||||||
Sbjct: 933 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 884



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>dbj|AK101447.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039L18, full
           insert sequence
          Length = 1285

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 11  acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70
           |||||||||||||| |||||||||||| | || ||||  || || || ||||| ||| | 
Sbjct: 997 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 938

                                                             
Query: 71  ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120
           || || ||||| ||||||| |||||  || |||||||| |||||||||||
Sbjct: 937 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 888



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>dbj|AK067016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B16, full
           insert sequence
          Length = 1276

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 11  acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70
           |||||||||||||| |||||||||||| | || ||||  || || || ||||| ||| | 
Sbjct: 999 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 940

                                                             
Query: 71  ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120
           || || ||||| ||||||| |||||  || |||||||| |||||||||||
Sbjct: 939 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 890



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                         
Query: 81      agaccttcaacatgtncccaatgttgcaaacgaaggttcccg 122
               ||||||||| |||||  ||||||||||| |||||||||||||
Sbjct: 3669138 agaccttcagcatgtcaccaatgttgcagacgaaggttcccg 3669179



 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 1       gaaaaaggcgacagatacacggtancgagggga 33
               ||||||||| |||||||||||||| ||||||||
Sbjct: 3668969 gaaaaaggcaacagatacacggtaacgagggga 3669001



 Score = 48.1 bits (24), Expect = 0.006
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 11      acagatacacggtancgaggggagttg 37
               |||||||||||||| ||||||||||||
Sbjct: 3350576 acagatacacggtagcgaggggagttg 3350602



 Score = 38.2 bits (19), Expect = 5.7
 Identities = 33/38 (86%)
 Strand = Plus / Plus

                                                     
Query: 83      accttcaacatgtncccaatgttgcaaacgaaggttcc 120
               ||||||| |||||  || |||||||| |||||||||||
Sbjct: 3350730 accttcagcatgtcaccgatgttgcagacgaaggttcc 3350767



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>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0499G10
          Length = 158375

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 81     agaccttcaacatgtncccaatgttgcaaacgaaggttcccg 122
              ||||||||| |||||  ||||||||||| |||||||||||||
Sbjct: 154913 agaccttcagcatgtcaccaatgttgcagacgaaggttcccg 154954



 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 1      gaaaaaggcgacagatacacggtancgagggga 33
              ||||||||| |||||||||||||| ||||||||
Sbjct: 154744 gaaaaaggcaacagatacacggtaacgagggga 154776



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>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1695_A02
          Length = 156214

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 81    agaccttcaacatgtncccaatgttgcaaacgaaggttcccg 122
             ||||||||| |||||  ||||||||||| |||||||||||||
Sbjct: 77399 agaccttcagcatgtcaccaatgttgcagacgaaggttcccg 77440



 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 1     gaaaaaggcgacagatacacggtancgagggga 33
             ||||||||| |||||||||||||| ||||||||
Sbjct: 77230 gaaaaaggcaacagatacacggtaacgagggga 77262



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>dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0069P02
          Length = 163033

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 11    acagatacacggtancgaggggagttg 37
             |||||||||||||| ||||||||||||
Sbjct: 66508 acagatacacggtagcgaggggagttg 66534



 Score = 38.2 bits (19), Expect = 5.7
 Identities = 33/38 (86%)
 Strand = Plus / Plus

                                                   
Query: 83    accttcaacatgtncccaatgttgcaaacgaaggttcc 120
             ||||||| |||||  || |||||||| |||||||||||
Sbjct: 66662 accttcagcatgtcaccgatgttgcagacgaaggttcc 66699



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>dbj|AP005550.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1058_F03
          Length = 150486

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 11    acagatacacggtancgaggggagttg 37
             |||||||||||||| ||||||||||||
Sbjct: 19057 acagatacacggtagcgaggggagttg 19083



 Score = 38.2 bits (19), Expect = 5.7
 Identities = 33/38 (86%)
 Strand = Plus / Plus

                                                   
Query: 83    accttcaacatgtncccaatgttgcaaacgaaggttcc 120
             ||||||| |||||  || |||||||| |||||||||||
Sbjct: 19211 accttcagcatgtcaccgatgttgcagacgaaggttcc 19248



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>gb|AC162916.3| Mus musculus BAC clone RP23-395G18 from chromosome 1, complete sequence
          Length = 224904

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    gaccagaccttcaacatgt 95
             |||||||||||||||||||
Sbjct: 60791 gaccagaccttcaacatgt 60809



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>gb|AC027761.6| Homo sapiens chromosome 8, clone RP11-655E7, complete sequence
          Length = 175657

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 101    atgttgcaaacgaaggttc 119
              |||||||||||||||||||
Sbjct: 116683 atgttgcaaacgaaggttc 116701



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 100     aatgttgcaaacgaaggtt 118
               |||||||||||||||||||
Sbjct: 5088510 aatgttgcaaacgaaggtt 5088492



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>gb|AC018377.6|AC018377 Homo sapiens, clone RP11-4C16, complete sequence
          Length = 163644

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 101   atgttgcaaacgaaggttc 119
             |||||||||||||||||||
Sbjct: 42187 atgttgcaaacgaaggttc 42205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 308,050
Number of Sequences: 3902068
Number of extensions: 308050
Number of successful extensions: 16904
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16865
Number of HSP's gapped (non-prelim): 39
length of query: 123
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 102
effective length of database: 17,151,101,840
effective search space: 1749412387680
effective search space used: 1749412387680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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