| Clone Name | rbaal6n03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F13, full insert sequence Length = 3080 Score = 87.7 bits (44), Expect = 7e-15 Identities = 101/122 (82%) Strand = Plus / Minus Query: 1 gaaaaaggcgacagatacacggtancgaggggagttgntgacnactctntgcagcgtggg 60 ||||||||| |||||||||||||| |||||||| ||| | || |||| || || || || Sbjct: 897 gaaaaaggcaacagatacacggtaacgaggggaattgttaacaactcgatgaagtgttgg 838 Query: 61 ctggtatntcccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120 || ||| | ||||| ||||| ||||||| ||||| ||||||||||| ||||||||||| Sbjct: 837 ttgatatattccatttgaccaaaccttcagcatgtcaccaatgttgcagacgaaggttcc 778 Query: 121 cg 122 || Sbjct: 777 cg 776
>ref|XM_450237.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1226 Score = 71.9 bits (36), Expect = 4e-10 Identities = 90/110 (81%) Strand = Plus / Minus Query: 11 acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70 |||||||||||||| |||||||||||| | || |||| || || || ||||| ||| | Sbjct: 993 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 934 Query: 71 ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120 || || ||||| ||||||| ||||| || |||||||| ||||||||||| Sbjct: 933 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 884
>ref|XM_507425.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0069P02.20 mRNA Length = 1276 Score = 71.9 bits (36), Expect = 4e-10 Identities = 90/110 (81%) Strand = Plus / Minus Query: 11 acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70 |||||||||||||| |||||||||||| | || |||| || || || ||||| ||| | Sbjct: 999 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 940 Query: 71 ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120 || || ||||| ||||||| ||||| || |||||||| ||||||||||| Sbjct: 939 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 890
>ref|XM_506638.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0069P02.20 mRNA Length = 1285 Score = 71.9 bits (36), Expect = 4e-10 Identities = 90/110 (81%) Strand = Plus / Minus Query: 11 acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70 |||||||||||||| |||||||||||| | || |||| || || || ||||| ||| | Sbjct: 997 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 938 Query: 71 ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120 || || ||||| ||||||| ||||| || |||||||| ||||||||||| Sbjct: 937 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 888
>dbj|AK104787.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E01, full insert sequence Length = 1226 Score = 71.9 bits (36), Expect = 4e-10 Identities = 90/110 (81%) Strand = Plus / Minus Query: 11 acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70 |||||||||||||| |||||||||||| | || |||| || || || ||||| ||| | Sbjct: 993 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 934 Query: 71 ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120 || || ||||| ||||||| ||||| || |||||||| ||||||||||| Sbjct: 933 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 884
>dbj|AK101447.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039L18, full insert sequence Length = 1285 Score = 71.9 bits (36), Expect = 4e-10 Identities = 90/110 (81%) Strand = Plus / Minus Query: 11 acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70 |||||||||||||| |||||||||||| | || |||| || || || ||||| ||| | Sbjct: 997 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 938 Query: 71 ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120 || || ||||| ||||||| ||||| || |||||||| ||||||||||| Sbjct: 937 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 888
>dbj|AK067016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B16, full insert sequence Length = 1276 Score = 71.9 bits (36), Expect = 4e-10 Identities = 90/110 (81%) Strand = Plus / Minus Query: 11 acagatacacggtancgaggggagttgntgacnactctntgcagcgtgggctggtatntc 70 |||||||||||||| |||||||||||| | || |||| || || || ||||| ||| | Sbjct: 999 acagatacacggtagcgaggggagttgttaacaactcgatgaagtgttggctgatatatt 940 Query: 71 ccattcgaccagaccttcaacatgtncccaatgttgcaaacgaaggttcc 120 || || ||||| ||||||| ||||| || |||||||| ||||||||||| Sbjct: 939 ccgtttgaccaaaccttcagcatgtcaccgatgttgcagacgaaggttcc 890
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 1e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 81 agaccttcaacatgtncccaatgttgcaaacgaaggttcccg 122 ||||||||| ||||| ||||||||||| ||||||||||||| Sbjct: 3669138 agaccttcagcatgtcaccaatgttgcagacgaaggttcccg 3669179 Score = 52.0 bits (26), Expect = 4e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 gaaaaaggcgacagatacacggtancgagggga 33 ||||||||| |||||||||||||| |||||||| Sbjct: 3668969 gaaaaaggcaacagatacacggtaacgagggga 3669001 Score = 48.1 bits (24), Expect = 0.006 Identities = 26/27 (96%) Strand = Plus / Plus Query: 11 acagatacacggtancgaggggagttg 37 |||||||||||||| |||||||||||| Sbjct: 3350576 acagatacacggtagcgaggggagttg 3350602 Score = 38.2 bits (19), Expect = 5.7 Identities = 33/38 (86%) Strand = Plus / Plus Query: 83 accttcaacatgtncccaatgttgcaaacgaaggttcc 120 ||||||| ||||| || |||||||| ||||||||||| Sbjct: 3350730 accttcagcatgtcaccgatgttgcagacgaaggttcc 3350767
>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0499G10 Length = 158375 Score = 54.0 bits (27), Expect = 1e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 81 agaccttcaacatgtncccaatgttgcaaacgaaggttcccg 122 ||||||||| ||||| ||||||||||| ||||||||||||| Sbjct: 154913 agaccttcagcatgtcaccaatgttgcagacgaaggttcccg 154954 Score = 52.0 bits (26), Expect = 4e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 gaaaaaggcgacagatacacggtancgagggga 33 ||||||||| |||||||||||||| |||||||| Sbjct: 154744 gaaaaaggcaacagatacacggtaacgagggga 154776
>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1695_A02 Length = 156214 Score = 54.0 bits (27), Expect = 1e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 81 agaccttcaacatgtncccaatgttgcaaacgaaggttcccg 122 ||||||||| ||||| ||||||||||| ||||||||||||| Sbjct: 77399 agaccttcagcatgtcaccaatgttgcagacgaaggttcccg 77440 Score = 52.0 bits (26), Expect = 4e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 gaaaaaggcgacagatacacggtancgagggga 33 ||||||||| |||||||||||||| |||||||| Sbjct: 77230 gaaaaaggcaacagatacacggtaacgagggga 77262
>dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0069P02 Length = 163033 Score = 48.1 bits (24), Expect = 0.006 Identities = 26/27 (96%) Strand = Plus / Plus Query: 11 acagatacacggtancgaggggagttg 37 |||||||||||||| |||||||||||| Sbjct: 66508 acagatacacggtagcgaggggagttg 66534 Score = 38.2 bits (19), Expect = 5.7 Identities = 33/38 (86%) Strand = Plus / Plus Query: 83 accttcaacatgtncccaatgttgcaaacgaaggttcc 120 ||||||| ||||| || |||||||| ||||||||||| Sbjct: 66662 accttcagcatgtcaccgatgttgcagacgaaggttcc 66699
>dbj|AP005550.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1058_F03 Length = 150486 Score = 48.1 bits (24), Expect = 0.006 Identities = 26/27 (96%) Strand = Plus / Plus Query: 11 acagatacacggtancgaggggagttg 37 |||||||||||||| |||||||||||| Sbjct: 19057 acagatacacggtagcgaggggagttg 19083 Score = 38.2 bits (19), Expect = 5.7 Identities = 33/38 (86%) Strand = Plus / Plus Query: 83 accttcaacatgtncccaatgttgcaaacgaaggttcc 120 ||||||| ||||| || |||||||| ||||||||||| Sbjct: 19211 accttcagcatgtcaccgatgttgcagacgaaggttcc 19248
>gb|AC162916.3| Mus musculus BAC clone RP23-395G18 from chromosome 1, complete sequence Length = 224904 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 gaccagaccttcaacatgt 95 ||||||||||||||||||| Sbjct: 60791 gaccagaccttcaacatgt 60809
>gb|AC027761.6| Homo sapiens chromosome 8, clone RP11-655E7, complete sequence Length = 175657 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 atgttgcaaacgaaggttc 119 ||||||||||||||||||| Sbjct: 116683 atgttgcaaacgaaggttc 116701
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 aatgttgcaaacgaaggtt 118 ||||||||||||||||||| Sbjct: 5088510 aatgttgcaaacgaaggtt 5088492
>gb|AC018377.6|AC018377 Homo sapiens, clone RP11-4C16, complete sequence Length = 163644 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 atgttgcaaacgaaggttc 119 ||||||||||||||||||| Sbjct: 42187 atgttgcaaacgaaggttc 42205 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 308,050 Number of Sequences: 3902068 Number of extensions: 308050 Number of successful extensions: 16904 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16865 Number of HSP's gapped (non-prelim): 39 length of query: 123 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 102 effective length of database: 17,151,101,840 effective search space: 1749412387680 effective search space used: 1749412387680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)