ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor 31 3.0
2SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr... 31 3.0
3ACCD_MYCTU (P63405) Putative acetyl-coenzyme A carboxylase carbo... 31 3.0
4ACCD_MYCBO (P63406) Putative acetyl-coenzyme A carboxylase carbo... 31 3.0
5SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot... 30 6.7
6RL10_LEIXX (Q6AH11) 50S ribosomal protein L10 30 6.7

>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor|
          Length = 307

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +1

Query: 331 TNANTCSPQLGQEPFSATTLFVNRPCSAPTDADATG*PIR*PNPIKTMWFTLVIP 495
           T   TC+P+  Q P + TT      C+ PT    T  P     P      T  +P
Sbjct: 30  TTTTTCAPRTTQPPCTTTTTTTTTTCAPPTQQSTTQPPCTTSKPTTPKQTTTQLP 84



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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
 Frame = +1

Query: 346  CSPQLGQEPFS--ATTLFVN-------RPCSAPTDADATG*PIR*PNPIKTMWFTLVIPS 498
            CS + GQ PFS  +  +F+        +P +AP DA  T  P R P P      T + P+
Sbjct: 2753 CSNRAGQGPFSNPSEKVFIRGTPDSPAQPAAAPRDAPVTSGPTRAPPPDSP---TSLAPT 2809

Query: 499  RDLAP---EKRDLAPNAS 543
              LAP   +   L+P+ S
Sbjct: 2810 PALAPPASQASTLSPSTS 2827



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>ACCD_MYCTU (P63405) Putative acetyl-coenzyme A carboxylase carboxyl|
           transferase subunit beta (EC 6.4.1.2) (ACCase beta
           chain)
          Length = 495

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 669 RTPRAGGPLDVYGTIEHLDAAAPVRYLGISGP---ELLHSEP 553
           R P  GG    +G++ HL  A P   +G  GP   ELL+ +P
Sbjct: 143 RHPTTGGVFASWGSLGHLTVAEPGALIGFLGPRVYELLYGDP 184



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>ACCD_MYCBO (P63406) Putative acetyl-coenzyme A carboxylase carboxyl|
           transferase subunit beta (EC 6.4.1.2) (ACCase beta
           chain)
          Length = 495

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 669 RTPRAGGPLDVYGTIEHLDAAAPVRYLGISGP---ELLHSEP 553
           R P  GG    +G++ HL  A P   +G  GP   ELL+ +P
Sbjct: 143 RHPTTGGVFASWGSLGHLTVAEPGALIGFLGPRVYELLYGDP 184



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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3259

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = +1

Query: 346  CSPQLGQEPFS--ATTLFVN-------RPCSAPTDADATG*PIR*PNPIKTMWFTLVIPS 498
            CS + GQ PFS  +  +F+        +  +AP DA  T  P R P P      T ++P+
Sbjct: 2750 CSNRAGQGPFSNPSEKVFIRGTQDSPAQSAAAPRDAPVTSGPTRAPPPDSP---TSLVPT 2806

Query: 499  RDLAPE 516
              LAP+
Sbjct: 2807 PPLAPQ 2812



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>RL10_LEIXX (Q6AH11) 50S ribosomal protein L10|
          Length = 172

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 509 AKSLDGITRVNHMVLIGLGYLIGYPVASASVGALQGLLTNNVVALK 372
           AKSL    + N ++++  GY  G P+ +  VG L  L +  V+  K
Sbjct: 88  AKSLRDFAKANPLLVVKSGYFDGNPLTAEEVGKLADLESREVLLAK 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,090,507
Number of Sequences: 219361
Number of extensions: 2265781
Number of successful extensions: 6250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6248
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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