ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_493888.1| Oryza sativa (japonica cultivar-group), predic... 260 5e-66
2dbj|AK067749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 260 5e-66
3dbj|AK104935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
4gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
5gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01,... 111 3e-21
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
7gb|AC101743.5| Mus musculus chromosome 1, clone RP23-278E1, comp... 42 2.3
8gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, co... 42 2.3
9gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, com... 42 2.3
10gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, compl... 42 2.3
11ref|XM_320080.1| Anopheles gambiae str. PEST ENSANGP00000012276 ... 42 2.3
12ref|NM_180889.1| Arabidopsis thaliana unknown protein AT5G59400 ... 40 9.3
13gb|AC160054.2| Gallus gallus BAC clone TAM32-10H18 from chromoso... 40 9.3
14emb|AL357713.11| Human DNA sequence from clone RP11-3J23 on chro... 40 9.3
15emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4,... 40 9.3
16gb|AC015844.12| Homo sapiens chromosome 17, clone RP11-283E7, co... 40 9.3
17gb|AC120570.5| Rattus norvegicus 1 BAC CH230-96N8 (Children's Ho... 40 9.3
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
20gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Can... 40 9.3
21gb|AC140060.3| Homo sapiens 12 BAC RP11-199A1 (Roswell Park Canc... 40 9.3
22dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
23dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 9.3
24gb|AY086008.1| Arabidopsis thaliana clone 206055 mRNA, complete ... 40 9.3
25gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.3
26emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 9.3
27dbj|AP003969.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.3
28dbj|AP003678.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.3
29emb|AL929395.8| Mouse DNA sequence from clone RP23-263P13 on chr... 40 9.3

>ref|XM_493888.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 819

 Score =  260 bits (131), Expect = 5e-66
 Identities = 329/395 (83%)
 Strand = Plus / Minus

                                                                       
Query: 151 tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
           |||||||| | |||| |||  ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 818 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 759

                                                                       
Query: 211 taaacccagcttcttctaggtccagacagagatctctcgactttagtacggtactccaat 270
           ||||||||  ||||||||| ||| ||||  ||| |||| |||||||| |||||||||| |
Sbjct: 758 taaacccatgttcttctagttcccgacaaggatttctcaactttagtgcggtactccagt 699

                                                                       
Query: 271 ggacactcacagacatggcattctgccttgtggggtgctttaatggatttatccgtcttc 330
           || ||    |||||||| ||||||||  | ||||| ||||| ||||| ||||||||||| 
Sbjct: 698 gggcagctgcagacatgacattctgctctatggggagctttgatggaattatccgtcttg 639

                                                                       
Query: 331 acaaatgcaaatacctgctcaccgcaattggggcaagagccttttagtgcgaccacattg 390
           ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||| ||||
Sbjct: 638 acaaatgcaaagacctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattg 579

                                                                       
Query: 391 tttgtcaacaggccttgcagtgcaccaactgatgcggatgcaaccggatagccaatcaga 450
           ||||||| || |||||||||||||||||| ||||| |||| || |||||| |||||||||
Sbjct: 578 tttgtcagcaagccttgcagtgcaccaacagatgcagatgaaatcggataaccaatcaga 519

                                                                       
Query: 451 tagcctaatccaatcaaaaccatgtggttcaccctggttatcccgtcaagggacttagcg 510
           ||||| ||||| || ||||||||||  || ||||| |||||| | ||||  || || || 
Sbjct: 518 tagcccaatccgattaaaaccatgtcatttaccctagttatcacatcaaacgattttgca 459

                                              
Query: 511 ccggagaagagagaccttgctccgaacgcgtcccc 545
           ||  | |||||| ||||||||||||| || |||||
Sbjct: 458 ccatacaagagataccttgctccgaatgcatcccc 424



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                       
Query: 580 agaaatgccgaggtaccgaacaggagcagcagcgtccagatgctcgatagtgccataaac 639
           ||||||||||| || || |||| |||||||||| |||||||||| || |||||||| |||
Sbjct: 389 agaaatgccgatgtgccaaacaagagcagcagcatccagatgcttgagagtgccatgaac 330

                           
Query: 640 atcgagtggtcctcct 655
           || || | ||||||||
Sbjct: 329 attgatttgtcctcct 314



to top

>dbj|AK067749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118J08, full
           insert sequence
          Length = 983

 Score =  260 bits (131), Expect = 5e-66
 Identities = 329/395 (83%)
 Strand = Plus / Minus

                                                                       
Query: 151 tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
           |||||||| | |||| |||  ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 743 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 684

                                                                       
Query: 211 taaacccagcttcttctaggtccagacagagatctctcgactttagtacggtactccaat 270
           ||||||||  ||||||||| ||| ||||  ||| |||| |||||||| |||||||||| |
Sbjct: 683 taaacccatgttcttctagttcccgacaaggatttctcaactttagtgcggtactccagt 624

                                                                       
Query: 271 ggacactcacagacatggcattctgccttgtggggtgctttaatggatttatccgtcttc 330
           || ||    |||||||| ||||||||  | ||||| ||||| ||||| ||||||||||| 
Sbjct: 623 gggcagctgcagacatgacattctgctctatggggagctttgatggaattatccgtcttg 564

                                                                       
Query: 331 acaaatgcaaatacctgctcaccgcaattggggcaagagccttttagtgcgaccacattg 390
           ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||| ||||
Sbjct: 563 acaaatgcaaagacctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattg 504

                                                                       
Query: 391 tttgtcaacaggccttgcagtgcaccaactgatgcggatgcaaccggatagccaatcaga 450
           ||||||| || |||||||||||||||||| ||||| |||| || |||||| |||||||||
Sbjct: 503 tttgtcagcaagccttgcagtgcaccaacagatgcagatgaaatcggataaccaatcaga 444

                                                                       
Query: 451 tagcctaatccaatcaaaaccatgtggttcaccctggttatcccgtcaagggacttagcg 510
           ||||| ||||| || ||||||||||  || ||||| |||||| | ||||  || || || 
Sbjct: 443 tagcccaatccgattaaaaccatgtcatttaccctagttatcacatcaaacgattttgca 384

                                              
Query: 511 ccggagaagagagaccttgctccgaacgcgtcccc 545
           ||  | |||||| ||||||||||||| || |||||
Sbjct: 383 ccatacaagagataccttgctccgaatgcatcccc 349



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                       
Query: 580 agaaatgccgaggtaccgaacaggagcagcagcgtccagatgctcgatagtgccataaac 639
           ||||||||||| || || |||| |||||||||| |||||||||| || |||||||| |||
Sbjct: 314 agaaatgccgatgtgccaaacaagagcagcagcatccagatgcttgagagtgccatgaac 255

                                               
Query: 640 atcgagtggtcctcctgccctcggcgtccgcgtacg 675
           || || | |||||||||||||| ||||| |||||||
Sbjct: 254 attgatttgtcctcctgccctcagcgtctgcgtacg 219



to top

>dbj|AK104935.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-A08, full
           insert sequence
          Length = 593

 Score =  258 bits (130), Expect = 2e-65
 Identities = 289/342 (84%)
 Strand = Plus / Minus

                                                                       
Query: 151 tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
           |||||||| | |||| |||  ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 369 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 310

                                                                       
Query: 211 taaacccagcttcttctaggtccagacagagatctctcgactttagtacggtactccaat 270
           ||||||||  ||||||||| ||| ||||  ||| |||| |||||||| |||||||||| |
Sbjct: 309 taaacccatgttcttctagttcccgacaaggatttctcaactttagtgcggtactccagt 250

                                                                       
Query: 271 ggacactcacagacatggcattctgccttgtggggtgctttaatggatttatccgtcttc 330
           || ||    |||||||| ||||||||  | ||||| ||||| ||||| ||||||||||| 
Sbjct: 249 gggcagctgcagacatgacattctgctctatggggagctttgatggaattatccgtcttg 190

                                                                       
Query: 331 acaaatgcaaatacctgctcaccgcaattggggcaagagccttttagtgcgaccacattg 390
           ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||| ||||
Sbjct: 189 acaaatgcaaagacctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattg 130

                                                                       
Query: 391 tttgtcaacaggccttgcagtgcaccaactgatgcggatgcaaccggatagccaatcaga 450
           ||||||| || |||||||||||||||||| ||||| |||| || |||||| |||||||||
Sbjct: 129 tttgtcagcaagccttgcagtgcaccaacagatgcagatgaaatcggataaccaatcaga 70

                                                     
Query: 451 tagcctaatccaatcaaaaccatgtggttcaccctggttatc 492
           ||||| ||||| || ||||||||||  || ||||| ||||||
Sbjct: 69  tagcccaatccgattaaaaccatgtcatttaccctagttatc 28



to top

>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score =  111 bits (56), Expect = 3e-21
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                         
Query: 343   acctgctcaccgcaattggggcaagagccttttagtgcgaccacattgtttgtcaacagg 402
             ||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| || |
Sbjct: 62195 acctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattgtttgtcagcaag 62136

                                 
Query: 403   ccttgcagtgcaccaactga 422
             ||||||||||||||||||||
Sbjct: 62135 ccttgcagtgcaccaactga 62116



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                         
Query: 580   agaaatgccgaggtaccgaacaggagcagcagcgtccagatgctcgatagtgccataaac 639
             ||||||||||| || || |||| |||||||||| |||||||||| || |||||||| |||
Sbjct: 61834 agaaatgccgatgtgccaaacaagagcagcagcatccagatgcttgagagtgccatgaac 61775

                                  
Query: 640   atcgagtggtcctcctgccct 660
             || || | |||||||||||||
Sbjct: 61774 attgatttgtcctcctgccct 61754



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                         
Query: 250   actttagtacggtactccaatggacactcacagacatggcattctgccttgtggggtgct 309
             |||||||| |||||||||| ||| ||    |||||||| ||||||||  | ||||| |||
Sbjct: 62384 actttagtgcggtactccagtgggcagctgcagacatgacattctgctctatggggagct 62325

                                                   
Query: 310   ttaatggatttatccgtcttcacaaatgcaaatacctg 347
             || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 62324 ttgatggaattatccgtcttgacaaatgcaaagacctg 62287



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 101/125 (80%)
 Strand = Plus / Minus

                                                                         
Query: 421   gatgcggatgcaaccggatagccaatcagatagcctaatccaatcaaaaccatgtggttc 480
             ||||| |||| || |||||| |||||||||||||| ||||| || ||||||||||  || 
Sbjct: 61993 gatgcagatgaaatcggataaccaatcagatagcccaatccgattaaaaccatgtcattt 61934

                                                                         
Query: 481   accctggttatcccgtcaagggacttagcgccggagaagagagaccttgctccgaacgcg 540
             ||||| |||||| | ||||  || || || ||  | |||||| ||||||||||||| || 
Sbjct: 61933 accctagttatcacatcaaacgattttgcaccatacaagagataccttgctccgaatgca 61874

                  
Query: 541   tcccc 545
             |||||
Sbjct: 61873 tcccc 61869



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                         
Query: 151   tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
             |||||||| | |||| |||  ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 62675 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 62616

                                         
Query: 211   taaacccagcttcttctaggtccagaca 238
             ||||||||  ||||||||| ||| ||||
Sbjct: 62615 taaacccatgttcttctagttcccgaca 62588



to top

>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence
          Length = 151589

 Score =  111 bits (56), Expect = 3e-21
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                          
Query: 343    acctgctcaccgcaattggggcaagagccttttagtgcgaccacattgtttgtcaacagg 402
              ||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| || |
Sbjct: 144594 acctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattgtttgtcagcaag 144535

                                  
Query: 403    ccttgcagtgcaccaactga 422
              ||||||||||||||||||||
Sbjct: 144534 ccttgcagtgcaccaactga 144515



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 580    agaaatgccgaggtaccgaacaggagcagcagcgtccagatgctcgatagtgccataaac 639
              ||||||||||| || || |||| |||||||||| |||||||||| || |||||||| |||
Sbjct: 144233 agaaatgccgatgtgccaaacaagagcagcagcatccagatgcttgagagtgccatgaac 144174

                                   
Query: 640    atcgagtggtcctcctgccct 660
              || || | |||||||||||||
Sbjct: 144173 attgatttgtcctcctgccct 144153



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                          
Query: 250    actttagtacggtactccaatggacactcacagacatggcattctgccttgtggggtgct 309
              |||||||| |||||||||| ||| ||    |||||||| ||||||||  | ||||| |||
Sbjct: 144783 actttagtgcggtactccagtgggcagctgcagacatgacattctgctctatggggagct 144724

                                                    
Query: 310    ttaatggatttatccgtcttcacaaatgcaaatacctg 347
              || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 144723 ttgatggaattatccgtcttgacaaatgcaaagacctg 144686



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 101/125 (80%)
 Strand = Plus / Minus

                                                                          
Query: 421    gatgcggatgcaaccggatagccaatcagatagcctaatccaatcaaaaccatgtggttc 480
              ||||| |||| || |||||| |||||||||||||| ||||| || ||||||||||  || 
Sbjct: 144392 gatgcagatgaaatcggataaccaatcagatagcccaatccgattaaaaccatgtcattt 144333

                                                                          
Query: 481    accctggttatcccgtcaagggacttagcgccggagaagagagaccttgctccgaacgcg 540
              ||||| |||||| | ||||  || || || ||  | |||||| ||||||||||||| || 
Sbjct: 144332 accctagttatcacatcaaacgattttgcaccatacaagagataccttgctccgaatgca 144273

                   
Query: 541    tcccc 545
              |||||
Sbjct: 144272 tcccc 144268



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                          
Query: 151    tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
              |||||||| | |||| |||  ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 145074 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 145015

                                          
Query: 211    taaacccagcttcttctaggtccagaca 238
              ||||||||  ||||||||| ||| ||||
Sbjct: 145014 taaacccatgttcttctagttcccgaca 144987



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 3e-21
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                          
Query: 343    acctgctcaccgcaattggggcaagagccttttagtgcgaccacattgtttgtcaacagg 402
              ||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| || |
Sbjct: 544796 acctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattgtttgtcagcaag 544737

                                  
Query: 403    ccttgcagtgcaccaactga 422
              ||||||||||||||||||||
Sbjct: 544736 ccttgcagtgcaccaactga 544717



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 580    agaaatgccgaggtaccgaacaggagcagcagcgtccagatgctcgatagtgccataaac 639
              ||||||||||| || || |||| |||||||||| |||||||||| || |||||||| |||
Sbjct: 544435 agaaatgccgatgtgccaaacaagagcagcagcatccagatgcttgagagtgccatgaac 544376

                                   
Query: 640    atcgagtggtcctcctgccct 660
              || || | |||||||||||||
Sbjct: 544375 attgatttgtcctcctgccct 544355



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                          
Query: 250    actttagtacggtactccaatggacactcacagacatggcattctgccttgtggggtgct 309
              |||||||| |||||||||| ||| ||    |||||||| ||||||||  | ||||| |||
Sbjct: 544985 actttagtgcggtactccagtgggcagctgcagacatgacattctgctctatggggagct 544926

                                                    
Query: 310    ttaatggatttatccgtcttcacaaatgcaaatacctg 347
              || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 544925 ttgatggaattatccgtcttgacaaatgcaaagacctg 544888



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 101/125 (80%)
 Strand = Plus / Minus

                                                                          
Query: 421    gatgcggatgcaaccggatagccaatcagatagcctaatccaatcaaaaccatgtggttc 480
              ||||| |||| || |||||| |||||||||||||| ||||| || ||||||||||  || 
Sbjct: 544594 gatgcagatgaaatcggataaccaatcagatagcccaatccgattaaaaccatgtcattt 544535

                                                                          
Query: 481    accctggttatcccgtcaagggacttagcgccggagaagagagaccttgctccgaacgcg 540
              ||||| |||||| | ||||  || || || ||  | |||||| ||||||||||||| || 
Sbjct: 544534 accctagttatcacatcaaacgattttgcaccatacaagagataccttgctccgaatgca 544475

                   
Query: 541    tcccc 545
              |||||
Sbjct: 544474 tcccc 544470



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                          
Query: 151    tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
              |||||||| | |||| |||  ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 545276 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 545217

                                          
Query: 211    taaacccagcttcttctaggtccagaca 238
              ||||||||  ||||||||| ||| ||||
Sbjct: 545216 taaacccatgttcttctagttcccgaca 545189



to top

>gb|AC101743.5| Mus musculus chromosome 1, clone RP23-278E1, complete sequence
          Length = 182942

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 331  acaaatgcaaatacctgctca 351
            |||||||||||||||||||||
Sbjct: 4222 acaaatgcaaatacctgctca 4242



to top

>gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, complete sequence
          Length = 184760

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 285    atggcattctgccttgtgggg 305
              |||||||||||||||||||||
Sbjct: 154602 atggcattctgccttgtgggg 154582



to top

>gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, complete sequence
          Length = 207359

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 285  atggcattctgccttgtgggg 305
            |||||||||||||||||||||
Sbjct: 6327 atggcattctgccttgtgggg 6307



to top

>gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, complete sequence
          Length = 174774

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    acaaatgcaaatacctgctca 351
              |||||||||||||||||||||
Sbjct: 104140 acaaatgcaaatacctgctca 104160



to top

>ref|XM_320080.1| Anopheles gambiae str. PEST ENSANGP00000012276
           (ENSANGG00000009787), partial mRNA
          Length = 1769

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 595 ccgaacaggagcagcagcgtc 615
           |||||||||||||||||||||
Sbjct: 413 ccgaacaggagcagcagcgtc 393



to top

>ref|NM_180889.1| Arabidopsis thaliana unknown protein AT5G59400 transcript variant
           AT5G59400.1 mRNA, complete cds
          Length = 1108

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 240 agatctctcgactttagtacggtactccaatggacactcacagacatg 287
           |||| |||| ||||| |||||| ||||||| |  ||||||||||||||
Sbjct: 832 agatttctctactttggtacggaactccaaggtgcactcacagacatg 785



to top

>gb|AC160054.2| Gallus gallus BAC clone TAM32-10H18 from chromosome unknown, complete
              sequence
          Length = 173827

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     atatgcactacagagcaaca 58
              ||||||||||||||||||||
Sbjct: 117637 atatgcactacagagcaaca 117656



to top

>emb|AL357713.11| Human DNA sequence from clone RP11-3J23 on chromosome 1 Contains part
             of the RERE gene for arginine-glutamic acid dipeptide (RE)
             repeats (FLJ38775), complete sequence
          Length = 103513

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 26    tggaaaaaaggcaatatgcactac 49
             ||||||||||||||||| ||||||
Sbjct: 92081 tggaaaaaaggcaatatacactac 92104



to top

>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05,
             complete sequence
          Length = 164943

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    cagcagataagaacacaaca 111
             ||||||||||||||||||||
Sbjct: 78904 cagcagataagaacacaaca 78885



to top

>gb|AC015844.12| Homo sapiens chromosome 17, clone RP11-283E7, complete sequence
          Length = 172478

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 125    ttcttcaagagctatcactgtgtt 148
              ||||||||||||||| ||||||||
Sbjct: 107455 ttcttcaagagctatgactgtgtt 107432



to top

>gb|AC120570.5| Rattus norvegicus 1 BAC CH230-96N8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227607

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   atcactgtgtttctagtctt 157
             ||||||||||||||||||||
Sbjct: 45139 atcactgtgtttctagtctt 45158



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 92       cagcagataagaacacaaca 111
                ||||||||||||||||||||
Sbjct: 34461419 cagcagataagaacacaaca 34461400



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 30       aaaaaggcaatatgcactac 49
                ||||||||||||||||||||
Sbjct: 24165726 aaaaaggcaatatgcactac 24165745



to top

>gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 203530

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  tcttcaagagctatcactgt 145
            ||||||||||||||||||||
Sbjct: 1991 tcttcaagagctatcactgt 1972



to top

>gb|AC140060.3| Homo sapiens 12 BAC RP11-199A1 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 51708

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 tcttcaagagctatcactgt 145
           ||||||||||||||||||||
Sbjct: 14  tcttcaagagctatcactgt 33



to top

>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E03
          Length = 164839

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     aaaaaggcaatatgcactac 49
              ||||||||||||||||||||
Sbjct: 141548 aaaaaggcaatatgcactac 141567



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 534     gaacgcgtccccgaacgcca 553
               ||||||||||||||||||||
Sbjct: 6526433 gaacgcgtccccgaacgcca 6526452



to top

>gb|AY086008.1| Arabidopsis thaliana clone 206055 mRNA, complete sequence
          Length = 1109

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 240 agatctctcgactttagtacggtactccaatggacactcacagacatg 287
           |||| |||| ||||| |||||| ||||||| |  ||||||||||||||
Sbjct: 832 agatttctctactttggtacggaactccaaggtgcactcacagacatg 785



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 532     ccgaacgcgtccccgaacgccagg 555
               |||| |||||||||||||||||||
Sbjct: 2304467 ccgagcgcgtccccgaacgccagg 2304490



to top

>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete
             sequence
          Length = 138387

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    cagcagataagaacacaaca 111
             ||||||||||||||||||||
Sbjct: 82727 cagcagataagaacacaaca 82708



to top

>dbj|AP003969.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-755E23, complete
             sequence
          Length = 163000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    ataagaacacaacagatatg 117
             ||||||||||||||||||||
Sbjct: 93737 ataagaacacaacagatatg 93718



to top

>dbj|AP003678.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-12O11, complete
            sequences
          Length = 153311

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   ataagaacacaacagatatg 117
            ||||||||||||||||||||
Sbjct: 9315 ataagaacacaacagatatg 9296



to top

>emb|AL929395.8| Mouse DNA sequence from clone RP23-263P13 on chromosome 2, complete
             sequence
          Length = 121993

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   gtcttttatccatctccttttcct 176
             ||||||||||| ||||||||||||
Sbjct: 19131 gtcttttatccttctccttttcct 19108


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,784,688
Number of Sequences: 3902068
Number of extensions: 5784688
Number of successful extensions: 103353
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103063
Number of HSP's gapped (non-prelim): 287
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top