No.
Definition
Score (bits)
E Value
1 ref|XM_493888.1| Oryza sativa (japonica cultivar-group), predic...
260
5e-66
2 dbj|AK067749.1| Oryza sativa (japonica cultivar-group) cDNA clon...
260
5e-66
3 dbj|AK104935.1| Oryza sativa (japonica cultivar-group) cDNA clon...
258
2e-65
4 gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome...
111
3e-21
5 gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01,...
111
3e-21
6 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
111
3e-21
7 gb|AC101743.5| Mus musculus chromosome 1, clone RP23-278E1, comp...
42
2.3
8 gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, co...
42
2.3
9 gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, com...
42
2.3
10 gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, compl...
42
2.3
11 ref|XM_320080.1| Anopheles gambiae str. PEST ENSANGP00000012276 ...
42
2.3
12 ref|NM_180889.1| Arabidopsis thaliana unknown protein AT5G59400 ...
40
9.3
13 gb|AC160054.2| Gallus gallus BAC clone TAM32-10H18 from chromoso...
40
9.3
14 emb|AL357713.11| Human DNA sequence from clone RP11-3J23 on chro...
40
9.3
15 emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4,...
40
9.3
16 gb|AC015844.12| Homo sapiens chromosome 17, clone RP11-283E7, co...
40
9.3
17 gb|AC120570.5| Rattus norvegicus 1 BAC CH230-96N8 (Children's Ho...
40
9.3
18 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.3
19 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.3
20 gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Can...
40
9.3
21 gb|AC140060.3| Homo sapiens 12 BAC RP11-199A1 (Roswell Park Canc...
40
9.3
22 dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic D...
40
9.3
23 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
40
9.3
24 gb|AY086008.1| Arabidopsis thaliana clone 206055 mRNA, complete ...
40
9.3
25 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
40
9.3
26 emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clon...
40
9.3
27 dbj|AP003969.2| Homo sapiens genomic DNA, chromosome 11q, clone:...
40
9.3
28 dbj|AP003678.2| Homo sapiens genomic DNA, chromosome 11q clone:R...
40
9.3
29 emb|AL929395.8| Mouse DNA sequence from clone RP23-263P13 on chr...
40
9.3
>gb|AC079356.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
complete sequence
Length = 176678
Score = 111 bits (56), Expect = 3e-21
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 343 acctgctcaccgcaattggggcaagagccttttagtgcgaccacattgtttgtcaacagg 402
||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| || |
Sbjct: 62195 acctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattgtttgtcagcaag 62136
Query: 403 ccttgcagtgcaccaactga 422
||||||||||||||||||||
Sbjct: 62135 ccttgcagtgcaccaactga 62116
Score = 73.8 bits (37), Expect = 7e-10
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 580 agaaatgccgaggtaccgaacaggagcagcagcgtccagatgctcgatagtgccataaac 639
||||||||||| || || |||| |||||||||| |||||||||| || |||||||| |||
Sbjct: 61834 agaaatgccgatgtgccaaacaagagcagcagcatccagatgcttgagagtgccatgaac 61775
Query: 640 atcgagtggtcctcctgccct 660
|| || | |||||||||||||
Sbjct: 61774 attgatttgtcctcctgccct 61754
Score = 67.9 bits (34), Expect = 4e-08
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 250 actttagtacggtactccaatggacactcacagacatggcattctgccttgtggggtgct 309
|||||||| |||||||||| ||| || |||||||| |||||||| | ||||| |||
Sbjct: 62384 actttagtgcggtactccagtgggcagctgcagacatgacattctgctctatggggagct 62325
Query: 310 ttaatggatttatccgtcttcacaaatgcaaatacctg 347
|| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 62324 ttgatggaattatccgtcttgacaaatgcaaagacctg 62287
Score = 58.0 bits (29), Expect = 4e-05
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 421 gatgcggatgcaaccggatagccaatcagatagcctaatccaatcaaaaccatgtggttc 480
||||| |||| || |||||| |||||||||||||| ||||| || |||||||||| ||
Sbjct: 61993 gatgcagatgaaatcggataaccaatcagatagcccaatccgattaaaaccatgtcattt 61934
Query: 481 accctggttatcccgtcaagggacttagcgccggagaagagagaccttgctccgaacgcg 540
||||| |||||| | |||| || || || || | |||||| ||||||||||||| ||
Sbjct: 61933 accctagttatcacatcaaacgattttgcaccatacaagagataccttgctccgaatgca 61874
Query: 541 tcccc 545
|||||
Sbjct: 61873 tcccc 61869
Score = 56.0 bits (28), Expect = 2e-04
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 151 tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
|||||||| | |||| ||| ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 62675 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 62616
Query: 211 taaacccagcttcttctaggtccagaca 238
|||||||| ||||||||| ||| ||||
Sbjct: 62615 taaacccatgttcttctagttcccgaca 62588
>gb|AC079022.2 |AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence
Length = 151589
Score = 111 bits (56), Expect = 3e-21
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 343 acctgctcaccgcaattggggcaagagccttttagtgcgaccacattgtttgtcaacagg 402
||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| || |
Sbjct: 144594 acctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattgtttgtcagcaag 144535
Query: 403 ccttgcagtgcaccaactga 422
||||||||||||||||||||
Sbjct: 144534 ccttgcagtgcaccaactga 144515
Score = 73.8 bits (37), Expect = 7e-10
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 580 agaaatgccgaggtaccgaacaggagcagcagcgtccagatgctcgatagtgccataaac 639
||||||||||| || || |||| |||||||||| |||||||||| || |||||||| |||
Sbjct: 144233 agaaatgccgatgtgccaaacaagagcagcagcatccagatgcttgagagtgccatgaac 144174
Query: 640 atcgagtggtcctcctgccct 660
|| || | |||||||||||||
Sbjct: 144173 attgatttgtcctcctgccct 144153
Score = 67.9 bits (34), Expect = 4e-08
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 250 actttagtacggtactccaatggacactcacagacatggcattctgccttgtggggtgct 309
|||||||| |||||||||| ||| || |||||||| |||||||| | ||||| |||
Sbjct: 144783 actttagtgcggtactccagtgggcagctgcagacatgacattctgctctatggggagct 144724
Query: 310 ttaatggatttatccgtcttcacaaatgcaaatacctg 347
|| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 144723 ttgatggaattatccgtcttgacaaatgcaaagacctg 144686
Score = 58.0 bits (29), Expect = 4e-05
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 421 gatgcggatgcaaccggatagccaatcagatagcctaatccaatcaaaaccatgtggttc 480
||||| |||| || |||||| |||||||||||||| ||||| || |||||||||| ||
Sbjct: 144392 gatgcagatgaaatcggataaccaatcagatagcccaatccgattaaaaccatgtcattt 144333
Query: 481 accctggttatcccgtcaagggacttagcgccggagaagagagaccttgctccgaacgcg 540
||||| |||||| | |||| || || || || | |||||| ||||||||||||| ||
Sbjct: 144332 accctagttatcacatcaaacgattttgcaccatacaagagataccttgctccgaatgca 144273
Query: 541 tcccc 545
|||||
Sbjct: 144272 tcccc 144268
Score = 56.0 bits (28), Expect = 2e-04
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 151 tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
|||||||| | |||| ||| ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 145074 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 145015
Query: 211 taaacccagcttcttctaggtccagaca 238
|||||||| ||||||||| ||| ||||
Sbjct: 145014 taaacccatgttcttctagttcccgaca 144987
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
complete sequence
Length = 29737217
Score = 111 bits (56), Expect = 3e-21
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 343 acctgctcaccgcaattggggcaagagccttttagtgcgaccacattgtttgtcaacagg 402
||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| || |
Sbjct: 544796 acctgctcaccgcaatttgggcaagaaccttttagtgcaaccaaattgtttgtcagcaag 544737
Query: 403 ccttgcagtgcaccaactga 422
||||||||||||||||||||
Sbjct: 544736 ccttgcagtgcaccaactga 544717
Score = 73.8 bits (37), Expect = 7e-10
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 580 agaaatgccgaggtaccgaacaggagcagcagcgtccagatgctcgatagtgccataaac 639
||||||||||| || || |||| |||||||||| |||||||||| || |||||||| |||
Sbjct: 544435 agaaatgccgatgtgccaaacaagagcagcagcatccagatgcttgagagtgccatgaac 544376
Query: 640 atcgagtggtcctcctgccct 660
|| || | |||||||||||||
Sbjct: 544375 attgatttgtcctcctgccct 544355
Score = 67.9 bits (34), Expect = 4e-08
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 250 actttagtacggtactccaatggacactcacagacatggcattctgccttgtggggtgct 309
|||||||| |||||||||| ||| || |||||||| |||||||| | ||||| |||
Sbjct: 544985 actttagtgcggtactccagtgggcagctgcagacatgacattctgctctatggggagct 544926
Query: 310 ttaatggatttatccgtcttcacaaatgcaaatacctg 347
|| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 544925 ttgatggaattatccgtcttgacaaatgcaaagacctg 544888
Score = 58.0 bits (29), Expect = 4e-05
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 421 gatgcggatgcaaccggatagccaatcagatagcctaatccaatcaaaaccatgtggttc 480
||||| |||| || |||||| |||||||||||||| ||||| || |||||||||| ||
Sbjct: 544594 gatgcagatgaaatcggataaccaatcagatagcccaatccgattaaaaccatgtcattt 544535
Query: 481 accctggttatcccgtcaagggacttagcgccggagaagagagaccttgctccgaacgcg 540
||||| |||||| | |||| || || || || | |||||| ||||||||||||| ||
Sbjct: 544534 accctagttatcacatcaaacgattttgcaccatacaagagataccttgctccgaatgca 544475
Query: 541 tcccc 545
|||||
Sbjct: 544474 tcccc 544470
Score = 56.0 bits (28), Expect = 2e-04
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 151 tagtcttttatccatctccttttcctaggatgtccttgcttcaccatataaacacggcca 210
|||||||| | |||| ||| ||||| ||||| ||||||||||| | |||||| | ||||
Sbjct: 545276 tagtctttcaaccatttccgcttccttggatgcccttgcttcacaagataaactctgcca 545217
Query: 211 taaacccagcttcttctaggtccagaca 238
|||||||| ||||||||| ||| ||||
Sbjct: 545216 taaacccatgttcttctagttcccgaca 545189
>emb|AL929395.8 | Mouse DNA sequence from clone RP23-263P13 on chromosome 2, complete
sequence
Length = 121993
Score = 40.1 bits (20), Expect = 9.3
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 153 gtcttttatccatctccttttcct 176
||||||||||| ||||||||||||
Sbjct: 19131 gtcttttatccttctccttttcct 19108
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,784,688
Number of Sequences: 3902068
Number of extensions: 5784688
Number of successful extensions: 103353
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103063
Number of HSP's gapped (non-prelim): 287
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)