>gb|BT018433.1| Zea mays clone EL01N0369D08.d mRNA sequence
          Length = 1767

 Score =  170 bits (86), Expect = 4e-39
 Identities = 150/170 (88%), Gaps = 6/170 (3%)
 Strand = Plus / Minus

                                                                        
Query: 209  ccatgggccctcctcaccctcgacttctccacccgggttcgccggaaaacctcctggatc 268
            |||||| |||||||| | ||||||||||||||||||||||||||||| || || ||||| 
Sbjct: 1339 ccatggtccctcctcgctctcgacttctccacccgggttcgccggaagacttcttggatt 1280

                                                                        
Query: 269  tgccggtcgttctccttgagcatctcgt---cgacgttgcccgaagggcaggaggtcagc 325
            |||||||||||||| || ||||||||||   ||||| ||||||||||||   ||||||| 
Sbjct: 1279 tgccggtcgttctcttttagcatctcgtcgacgacgctgcccgaagggc---aggtcagg 1223

                                                              
Query: 326  ggccccgaatggtggatcttgttgcctttcgatccgtagccaatagctcc 375
            ||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1222 ggcccagaatggtggatcttgttgcccttggatccgtagccaatagctcc 1173



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 143  ctggagcggctggaagggaagaccggga 170
            ||||||||||||||||||||||||||||
Sbjct: 1408 ctggagcggctggaagggaagaccggga 1381



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 464  gattcagacagcctccgtccatgagcaaatgcttcagcttgag 506
            ||||| ||||||||||| ||||||| ||||||| |||||||||
Sbjct: 1090 gattccgacagcctccgcccatgagaaaatgctccagcttgag 1048

>gb|AY111071.1| Zea mays CL51477_1 mRNA sequence
          Length = 691

 Score =  155 bits (78), Expect = 2e-34
 Identities = 149/170 (87%), Gaps = 7/170 (4%)
 Strand = Plus / Plus

                                                                       
Query: 209 ccatgggccctcctcaccctcgacttctccacccgggttcgccggaaaacctcctggatc 268
           |||||| |||||||| | ||||||||||||||||||||||||||||| || || ||||| 
Sbjct: 469 ccatggtccctcctcgctctcgacttctccacccgggttcgccggaagacttcttggatt 528

                                                                       
Query: 269 tgccggtcgttctccttgagcatctcgt---cgacgttgcccgaagggcaggaggtcagc 325
           |||||||||||||| || ||||||||||   ||||| ||||||||||||   ||||||| 
Sbjct: 529 tgccggtcgttctcttttagcatctcgtcgacgacgctgcccgaagggc---aggtcagg 585

                                                             
Query: 326 ggccccgaatggtggatcttgttgcctttcgatccgtagccaatagctcc 375
           ||||| |||||| ||||||||||||| || ||||||||||||||||||||
Sbjct: 586 ggcccagaatgg-ggatcttgttgcccttggatccgtagccaatagctcc 634



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 143 ctggagcggctggaagggaagaccggga 170
           ||||||||||||||||||||||||||||
Sbjct: 400 ctggagcggctggaagggaagaccggga 427

>gb|AY112341.1| Zea mays CL51477_-2 mRNA sequence
          Length = 575

 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                       
Query: 209 ccatgggccctcctcaccctcgacttctccacccgggttcgccggaaaacctcctggatc 268
           |||||| |||||||| | |||||||||||||||||||||| |||||| || || ||||| 
Sbjct: 473 ccatggtccctcctcgctctcgacttctccacccgggttctccggaacacttcttggatt 532

                                                
Query: 269 tgccggtcgttctccttgagcatctcgtcgacgttgc 305
           ||||||||||||||||| ||||||| | |||||||||
Sbjct: 533 tgccggtcgttctccttcagcatcttggcgacgttgc 569



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 140 tagctggagcggctggaagggaagaccggga 170
           |||||||||||||||||||||||||| ||||
Sbjct: 401 tagctggagcggctggaagggaagactggga 431

>ref|NM_188289.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2106

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 241/305 (79%), Gaps = 12/305 (3%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtgcccatgggccctcctcaccctcgacttctccacccgggttcgccggaaaacctcctg 264
            |||||||||| | |||||  | || |||||||| ||||||||||| ||||| || || ||
Sbjct: 2004 gtgcccatggcctctccttgctcttgacttctcaacccgggttcggcggaagacttcttg 1945

                                                                        
Query: 265  gatctgccggtcgttctccttgagcatctcgtcgacgttgcccgaagggcaggaggtcag 324
             || || ||||| || ||||| |||||||  ||||| ||||| ||||||||     | ||
Sbjct: 1944 aatttggcggtcattttccttcagcatctgatcgacattgcctgaagggcaaa---ttag 1888

                                                                        
Query: 325  cggccccgaatggtggatcttgttgcctttcgatccgtagccaatagctcctcctccatc 384
             ||||| ||||||||||||||||| || || ||||| ||||||||||      |||||||
Sbjct: 1887 aggcccagaatggtggatcttgttaccctttgatccatagccaatag------ctccatc 1834

                                                                        
Query: 385  cacccggccggcgctcttatcatctttctggtggaatacttggtcgtacttcccgctacc 444
            ||||| ||     ||| | ||||||||||| || |||||||| || ||||| || |||| 
Sbjct: 1833 caccctgcta---ctcctgtcatctttctgctgaaatacttgatcatactttccactact 1777

                                                                        
Query: 445  actgaagtgcccgttaatagattcagacagcctccgtccatgagcaaatgcttcagcttg 504
            ||||||  || | || ||||||||||||||||||||| |||| | ||| ||||| |||||
Sbjct: 1776 actgaaacgctcatttatagattcagacagcctccgttcatgcggaaaggcttcggcttg 1717

                 
Query: 505  agtaa 509
            |||||
Sbjct: 1716 agtaa 1712



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 140  tagctggagcggctggaagggaagaccgggacagcgcccaagtc 183
            |||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 2087 tagctggagcggcttgaagggaagaccggggcagcgccaaagtc 2044

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                           
Query: 404     tcatctttctggtggaatacttggtcgtacttcccgctaccactgaagtgcccgttaata 463
               ||||||||||| || |||||||| || ||||| || |||| ||||||  || | || |||
Sbjct: 5497312 tcatctttctgctgaaatacttgatcatactttccactactactgaaacgctcatttata 5497253

                                                             
Query: 464     gattcagacagcctccgtccatgagcaaatgcttcagcttgagtaa 509
               |||||||||||||||||| |||| | ||| ||||| ||||||||||
Sbjct: 5497252 gattcagacagcctccgttcatgcggaaaggcttcggcttgagtaa 5497207



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                           
Query: 140     tagctggagcggctggaagggaagaccgggacagcgcccaagtc 183
               |||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 5497890 tagctggagcggcttgaagggaagaccggggcagcgccaaagtc 5497847



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 129/162 (79%), Gaps = 3/162 (1%)
 Strand = Plus / Minus

                                                                           
Query: 205     gtgcccatgggccctcctcaccctcgacttctccacccgggttcgccggaaaacctcctg 264
               |||||||||| | |||||  | || |||||||| ||||||||||| ||||| || || ||
Sbjct: 5497807 gtgcccatggcctctccttgctcttgacttctcaacccgggttcggcggaagacttcttg 5497748

                                                                           
Query: 265     gatctgccggtcgttctccttgagcatctcgtcgacgttgcccgaagggcaggaggtcag 324
                || || ||||| || ||||| |||||||  ||||| ||||| |||||||   |  | ||
Sbjct: 5497747 aatttggcggtcattttccttcagcatctgatcgacattgcctgaagggc---aaattag 5497691

                                                         
Query: 325     cggccccgaatggtggatcttgttgcctttcgatccgtagcc 366
                ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 5497690 aggcccagaatggtggatcttgttaccctttgatccatagcc 5497649

>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1015E06
          Length = 164583

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                         
Query: 404   tcatctttctggtggaatacttggtcgtacttcccgctaccactgaagtgcccgttaata 463
             ||||||||||| || |||||||| || ||||| || |||| ||||||  || | || |||
Sbjct: 94152 tcatctttctgctgaaatacttgatcatactttccactactactgaaacgctcatttata 94093

                                                           
Query: 464   gattcagacagcctccgtccatgagcaaatgcttcagcttgagtaa 509
             |||||||||||||||||| |||| | ||| ||||| ||||||||||
Sbjct: 94092 gattcagacagcctccgttcatgcggaaaggcttcggcttgagtaa 94047



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 140   tagctggagcggctggaagggaagaccgggacagcgcccaagtc 183
             |||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 94730 tagctggagcggcttgaagggaagaccggggcagcgccaaagtc 94687



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 129/162 (79%), Gaps = 3/162 (1%)
 Strand = Plus / Minus

                                                                         
Query: 205   gtgcccatgggccctcctcaccctcgacttctccacccgggttcgccggaaaacctcctg 264
             |||||||||| | |||||  | || |||||||| ||||||||||| ||||| || || ||
Sbjct: 94647 gtgcccatggcctctccttgctcttgacttctcaacccgggttcggcggaagacttcttg 94588

                                                                         
Query: 265   gatctgccggtcgttctccttgagcatctcgtcgacgttgcccgaagggcaggaggtcag 324
              || || ||||| || ||||| |||||||  ||||| ||||| |||||||   |  | ||
Sbjct: 94587 aatttggcggtcattttccttcagcatctgatcgacattgcctgaagggc---aaattag 94531

                                                       
Query: 325   cggccccgaatggtggatcttgttgcctttcgatccgtagcc 366
              ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 94530 aggcccagaatggtggatcttgttaccctttgatccatagcc 94489

>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 258   cctcctggatctgccggtcgttctcc 283
             |||||||||||||||||||| |||||
Sbjct: 30196 cctcctggatctgccggtcgatctcc 30221

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 258     cctcctggatctgccggtcgttctcc 283
               |||||||||||||||||||| |||||
Sbjct: 7495497 cctcctggatctgccggtcgatctcc 7495472

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 189      gcccggcctccacgccgtgcc 209
                |||||||||||||||||||||
Sbjct: 11120489 gcccggcctccacgccgtgcc 11120469

>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   gcccggcctccacgccgtgcc 209
             |||||||||||||||||||||
Sbjct: 12630 gcccggcctccacgccgtgcc 12650

>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 283    cttgagcatctcgtcgacgtt 303
              |||||||||||||||||||||
Sbjct: 120108 cttgagcatctcgtcgacgtt 120088

>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 283    cttgagcatctcgtcgacgtt 303
              |||||||||||||||||||||
Sbjct: 232511 cttgagcatctcgtcgacgtt 232491

>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 283    cttgagcatctcgtcgacgtt 303
              |||||||||||||||||||||
Sbjct: 216080 cttgagcatctcgtcgacgtt 216060

>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   gcccggcctccacgccgtgcc 209
             |||||||||||||||||||||
Sbjct: 33846 gcccggcctccacgccgtgcc 33826

>gb|AC007158.10|AC007158 Homo sapiens, clone RP11-90A1, complete sequence
          Length = 201299

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 217    cctcctcaccctcgacttctccacc 241
              |||| ||||||||||||||||||||
Sbjct: 132529 cctcatcaccctcgacttctccacc 132553

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 189      gcccggcctccacgccgtgcc 209
                |||||||||||||||||||||
Sbjct: 11117252 gcccggcctccacgccgtgcc 11117232

>gb|AC007092.4| Homo sapiens BAC clone RP11-90D1 from 2, complete sequence
          Length = 157176

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 217   cctcctcaccctcgacttctccacc 241
             |||| ||||||||||||||||||||
Sbjct: 40310 cctcatcaccctcgacttctccacc 40286

>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     cctcaccctcgacttctcca 239
               ||||||||||||||||||||
Sbjct: 1660199 cctcaccctcgacttctcca 1660218

>gb|AC087833.3| Papio anubis clone RP41-78F4, complete sequence
          Length = 154295

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   tagctcctcctccatccacc 388
             ||||||||||||||||||||
Sbjct: 96573 tagctcctcctccatccacc 96554

>ref|XM_748125.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu5g14390)
            partial mRNA
          Length = 1821

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  agcatctcgtcgacgttgcc 306
            ||||||||||||||||||||
Sbjct: 1166 agcatctcgtcgacgttgcc 1147

>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1)
              gene, complete cds
          Length = 169976

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    ctccttgagcatctcgtcga 299
              ||||||||||||||||||||
Sbjct: 133714 ctccttgagcatctcgtcga 133695

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 278     ttctccttgagcatctcgtcgacg 301
               ||||||||||||||||| ||||||
Sbjct: 3148968 ttctccttgagcatctcttcgacg 3148945

>gb|AC183492.1| Brassica oleracea Contig G, complete sequence
          Length = 236640

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 335   tggtggatcttgttgcctttcgat 358
             |||||| |||||||||||||||||
Sbjct: 11495 tggtggctcttgttgcctttcgat 11472

>ref|XM_574683.1| PREDICTED: Rattus norvegicus oligonucleotide/oligosaccharide-binding
            fold containing 1 (predicted) (Obfc1_predicted), mRNA
          Length = 1558

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 546  ctgatacagccacaggaaaa 565
            ||||||||||||||||||||
Sbjct: 1539 ctgatacagccacaggaaaa 1558

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 272     cggtcgttctccttgagcatctcg 295
               ||||||||||||| ||||||||||
Sbjct: 3055836 cggtcgttctcctggagcatctcg 3055813

>emb|BX537330.9| Zebrafish DNA sequence from clone DKEYP-104A11 in linkage group 17,
             complete sequence
          Length = 99858

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   atgttctccgtgtttgcttg 614
             ||||||||||||||||||||
Sbjct: 97243 atgttctccgtgtttgcttg 97224


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,438,584
Number of Sequences: 3902068
Number of extensions: 4438584
Number of successful extensions: 80459
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80142
Number of HSP's gapped (non-prelim): 313
length of query: 635
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 612
effective length of database: 17,143,297,704
effective search space: 10491698194848
effective search space used: 10491698194848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)