ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal16j15 |
|---|---|
| Clone Library Name | barley_pub |
>DHGB_ACICA (P13650) Quinoprotein glucose dehydrogenase-B precursor (EC| 1.1.5.2) (Glucose dehydrogenase-B [pyrroloquinoline-quinone]) (Soluble glucose dehydrogenase) (s-GDH) Length = 478 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +2 Query: 77 TIYTYDERIN-NGTKCS*LFPQCFHIVIPSAQYHFRPGKRSXM*LPNSYLLPS 232 T+YT + N N C + C+ V PS+ Y ++ GK++ N+ L+PS Sbjct: 347 TLYTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTLLVPS 399
>FAD3C_ARATH (P46310) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 446 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/64 (23%), Positives = 30/64 (46%) Frame = +3 Query: 375 FVHPFHHSVQIFWRQ*RHSLLSFGSILLRQLHTKLLTHVCHHIRTHVLHHGCKHLPHSRV 554 ++H H ++ W + + G + L+ ++ H I THV+HH +PH Sbjct: 321 YLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPH--- 377 Query: 555 FHII 566 +H++ Sbjct: 378 YHLV 381
>FAD3C_BRANA (P48618) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) (Fragment) Length = 404 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/64 (23%), Positives = 30/64 (46%) Frame = +3 Query: 375 FVHPFHHSVQIFWRQ*RHSLLSFGSILLRQLHTKLLTHVCHHIRTHVLHHGCKHLPHSRV 554 ++H H ++ W + + G + L+ ++ H I THV+HH +PH Sbjct: 279 YLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPH--- 335 Query: 555 FHII 566 +H++ Sbjct: 336 YHLV 339
>ST1S1_BRARE (Q6PH37) Cytosolic sulfotransferase 1 (EC 2.8.2.-) (SULT1 ST1)| Length = 299 Score = 30.4 bits (67), Expect = 4.0 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -3 Query: 178 KVILGGWDDNVEALWEESRTFCTIVYSF 95 K + G W D+V WE+ +T+ ++Y F Sbjct: 171 KSVFGPWYDHVNGYWEKKQTYSNLLYLF 198
>MEXB_PSEAE (P52002) Multidrug resistance protein mexB (Multidrug-efflux| transporter mexB) Length = 1046 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 289 ISMTIARIRPFLPRSQFFVFFATSTPCCALSIHFII 396 I TIA + PF+P+ V+ +TP + SIH ++ Sbjct: 306 IRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHEVV 341
>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9| Length = 736 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -1 Query: 399 QNDEMDGQSTARSRSSKEDEELAPR*ERPDPS 304 +N G + ARSR+S+ E++APR PDPS Sbjct: 584 RNSPGPGGAPARSRTSEYYEDVAPRFATPDPS 615
>FAD3C_SESIN (P48620) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 447 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/67 (23%), Positives = 31/67 (46%) Frame = +3 Query: 366 LLCFVHPFHHSVQIFWRQ*RHSLLSFGSILLRQLHTKLLTHVCHHIRTHVLHHGCKHLPH 545 L+ ++H H ++ W + + G + + ++ H I THV+HH +PH Sbjct: 322 LVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPH 381 Query: 546 SRVFHII 566 +H+I Sbjct: 382 ---YHLI 385
>VNS3_AHSV2 (Q64914) Nonstructural protein NS3 [Contains: Nonstructural protein| NS3A] Length = 218 Score = 30.4 bits (67), Expect = 4.0 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Frame = -2 Query: 530 ASMVKNMSPDVMAN-MGEQFGMK--LSKEDAAKAQQAMSSLSPEDLDRMMKWMDKAQQGV 360 AS ++ MS ++ M G L E AA A + PE + ++ K Q G+ Sbjct: 39 ASQMETMSLGILNQAMSSSAGASGALKDEKAAFGAMAEALRDPEPIRKI-----KRQVGI 93 Query: 359 EVAKKTKNWLLG--RKGLILAIVMLILAFILQRLGFIG 252 + K K L G RK LIL I+M I A + +G Sbjct: 94 QTLKALKVELSGMRRKRLILKIIMFICANVTMATSLVG 131
>VAT_THEAC (O05209) VCP-like ATPase| Length = 745 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/60 (23%), Positives = 35/60 (58%) Frame = -2 Query: 524 MVKNMSPDVMANMGEQFGMKLSKEDAAKAQQAMSSLSPEDLDRMMKWMDKAQQGVEVAKK 345 +VK + V +GE+ +++ +E A++ + +S +S ED+ + + + K ++ +E+ K Sbjct: 152 VVKTLPSKVPVEIGEETKIEIREEPASEVLEEVSRISYEDIGGLSEQLGKIREMIELPLK 211
>FAD3C_SOYBN (P48621) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 453 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/67 (22%), Positives = 31/67 (46%) Frame = +3 Query: 366 LLCFVHPFHHSVQIFWRQ*RHSLLSFGSILLRQLHTKLLTHVCHHIRTHVLHHGCKHLPH 545 L+ ++H H ++ W + + G + + ++ H I THV+HH +PH Sbjct: 326 LVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPH 385 Query: 546 SRVFHII 566 +H++ Sbjct: 386 ---YHLV 389
>VNS3_AHSV1 (Q64903) Nonstructural protein NS3 [Contains: Nonstructural protein| NS3A] Length = 218 Score = 30.0 bits (66), Expect = 5.3 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Frame = -2 Query: 530 ASMVKNMSPDVMAN-MGEQFGMK--LSKEDAAKAQQAMSSLSPEDLDRMMKWMDKAQQGV 360 AS ++ MS ++ M G L E AA A + PE + ++ K Q G+ Sbjct: 39 ASQMETMSLGILNQAMSSSAGASGALKDEKAAYGAVAEALRDPEPIRKI-----KRQVGI 93 Query: 359 EVAKKTKNWLLG--RKGLILAIVMLILAFILQRLGFIG 252 + K K L G RK LIL I+M I A + +G Sbjct: 94 QTLKTLKVELSGMRRKKLILKIIMFICANVTMATSLVG 131
>VNS3_AHSV8 (Q64905) Nonstructural protein NS3 [Contains: Nonstructural protein| NS3A] Length = 218 Score = 29.6 bits (65), Expect = 6.9 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Frame = -2 Query: 530 ASMVKNMSPDVMAN-MGEQFGMK--LSKEDAAKAQQAMSSLSPEDLDRMMKWMDKAQQGV 360 AS ++ MS ++ M G L E AA A + PE + ++ K Q G+ Sbjct: 39 ASQMETMSLGILNQAMSSSAGASGALKDEKAAFGAVAEALRDPEPIRKI-----KRQVGI 93 Query: 359 EVAKKTKNWLLG--RKGLILAIVMLILAFILQRLGFIG 252 + K K L G RK LIL I+M I A + +G Sbjct: 94 QTLKTLKVELSGMRRKKLILKIIMFICANVTMATSLVG 131
>POLC3_SYRVU (P58171) Polcalcin Syr v 3 (Calcium-binding pollen allergen Syr v| 3) Length = 81 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/53 (26%), Positives = 28/53 (52%) Frame = -2 Query: 467 KLSKEDAAKAQQAMSSLSPEDLDRMMKWMDKAQQGVEVAKKTKNWLLGRKGLI 309 K+S + + + + S++PE++ RMM +D G ++ K++ GLI Sbjct: 22 KISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGFISFEEFKDFARANSGLI 74
>FAD3E_BRANA (P48624) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 383 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/64 (21%), Positives = 29/64 (45%) Frame = +3 Query: 375 FVHPFHHSVQIFWRQ*RHSLLSFGSILLRQLHTKLLTHVCHHIRTHVLHHGCKHLPHSRV 554 ++H H ++ W + + G + + ++ H I THV+HH +PH Sbjct: 256 YLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPH--- 312 Query: 555 FHII 566 +H++ Sbjct: 313 YHLV 316
>FAD3E_ARATH (P48623) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 386 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/64 (21%), Positives = 29/64 (45%) Frame = +3 Query: 375 FVHPFHHSVQIFWRQ*RHSLLSFGSILLRQLHTKLLTHVCHHIRTHVLHHGCKHLPHSRV 554 ++H H ++ W + + G + + ++ H I THV+HH +PH Sbjct: 259 YLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPH--- 315 Query: 555 FHII 566 +H++ Sbjct: 316 YHLV 319
>MCPC_SALTY (Q02755) Methyl-accepting chemotaxis citrate transducer (Citrate| chemoreceptor protein) Length = 547 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = -2 Query: 452 DAAKAQQAMSSLSPEDLDRMMKWMDKAQQGVEVAKKTKNWLLGRKGLILAIVMLILAFI- 276 DA KAQ M + + L + + + A + + W L G+IL IV+++LAFI Sbjct: 154 DAQKAQDDMEQVYDQWLSQNAQLIKLASDQNQSSFTQMQWTL---GIILLIVLIVLAFIW 210 Query: 275 --LQRL 264 LQR+ Sbjct: 211 LGLQRV 216
>SECY_SYNY3 (P77964) Preprotein translocase secY subunit| Length = 442 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -2 Query: 419 LSPEDLDRMMKWMDKAQQGVEVAKKTKNWLLGRKGLILAIVMLILAFI 276 ++PED+ + +K M + G+ KKT+ +L G + + + L+F+ Sbjct: 341 VNPEDVSKNLKKMGSSIPGIRPGKKTEQYLEGVLNRLTFLGAIFLSFV 388
>FACD2_RAT (Q6IV68) Fanconi anemia group D2 protein homolog (Protein FACD2)| (FanCD2) Length = 1451 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +3 Query: 411 WRQ*RHSLLSFGSILLRQLHTKLLTHVCHHIRTHVLHHGCKHLP 542 +R+ R +LS L QL+T+LL H+C H + H KH+P Sbjct: 1317 FRKHRDDVLSLLQTL--QLNTRLLHHLCGHSKIHQDTRLTKHVP 1358
>PCP_STAAN (P65677) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 483 THVCHHIRTHVLHHGCKHLPHSRVFHIISHGFLHI 587 T+VC+H+ H+ + KH PH R GF+H+ Sbjct: 138 TYVCNHVLYHLGYLQDKHYPHLR------FGFIHV 166
>PCP_STAAM (P65676) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 212 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 483 THVCHHIRTHVLHHGCKHLPHSRVFHIISHGFLHI 587 T+VC+H+ H+ + KH PH R GF+H+ Sbjct: 138 TYVCNHVLYHLGYLQDKHYPHLR------FGFIHV 166 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,028,457 Number of Sequences: 219361 Number of extensions: 1832193 Number of successful extensions: 5283 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5056 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5262 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
