ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16j15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476701.1| Oryza sativa (japonica cultivar-group), mRNA 297 2e-77
2dbj|AK065877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 2e-77
3dbj|AK062039.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 2e-77
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
6gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Can... 48 0.033
7emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 i... 46 0.13
8emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in... 46 0.13
9ref|NM_203078.1| Arabidopsis thaliana unknown protein AT5G18940 ... 42 2.1
10ref|NM_121899.2| Arabidopsis thaliana unknown protein AT5G18940 ... 42 2.1
11gb|DQ232883.1| Homo sapiens tripartite motif protein 69 (TRIM69)... 42 2.1
12gb|AC165085.3| Mus musculus BAC clone RP23-222G22 from chromosom... 42 2.1
13ref|XM_523194.1| PREDICTED: Pan troglodytes similar to Ring fing... 42 2.1
14gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome ... 42 2.1
15gb|AY305385.1| Homo sapiens HSD-34 mRNA, complete cds 42 2.1
16gb|BT012002.1| Arabidopsis thaliana At5g18940 mRNA sequence 42 2.1
17ref|XM_535459.2| PREDICTED: Canis familiaris similar to ring fin... 42 2.1
18gb|BC047945.1| Homo sapiens ring finger protein 36, transcript v... 42 2.1
19gb|BC033314.1| Homo sapiens ring finger protein 36, transcript v... 42 2.1
20gb|AC087828.6| Homo sapiens chromosome 15, clone RP11-292P13, co... 42 2.1
21gb|AC132058.5| Rattus norvegicus 18 BAC CH230-229M9 (Children's ... 42 2.1
22gb|BC024199.1| Homo sapiens ring finger protein 36, mRNA (cDNA c... 42 2.1
23gb|AC157607.4| Mus musculus chromosome 1, clone RP23-401G11, com... 42 2.1
24gb|AC122108.2| Homo sapiens chromosome 15 clone CTD-2008A1 map 1... 42 2.1
25gb|AF302089.1|AF302089 Homo sapiens TRIMLESS beta (TRIMLESS) mRN... 42 2.1
26gb|AF302088.1|AF302088 Homo sapiens TRIMLESS alpha (TRIMLESS) mR... 42 2.1
27ref|NM_080745.3| Homo sapiens ring finger protein 36 (RNF36), tr... 42 2.1
28ref|NM_182985.3| Homo sapiens ring finger protein 36 (RNF36), tr... 42 2.1
29gb|AC091245.2| Homo sapiens chromosome 15 clone RP11-456H13 map ... 42 2.1
30dbj|AB168995.1| Macaca fascicularis testis cDNA, clone: QtsA-164... 42 2.1
31gb|AC018901.8| Homo sapiens chromosome 15 clone RP11-292P13 map ... 42 2.1
32emb|BX829741.1|CNS0A1YL Arabidopsis thaliana Full-length cDNA Co... 42 2.1
33emb|BX829534.1|CNS0A09C Arabidopsis thaliana Full-length cDNA Co... 42 2.1
34emb|BX831054.1|CNS09ZCF Arabidopsis thaliana Full-length cDNA Co... 42 2.1
35emb|BX833618.1|CNS09Z1H Arabidopsis thaliana Full-length cDNA Co... 42 2.1
36gb|AY088359.1| Arabidopsis thaliana clone 6139 mRNA, complete se... 42 2.1
37gb|AC068655.3|AC068655 Genomic Sequence For Arabidopsis thaliana... 42 2.1
38emb|AL360161.1|HST000218 Homo sapiens mRNA full length insert cD... 42 2.1
39gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome ... 40 8.1
40gb|AE006899.1| Sulfolobus solfataricus P2 section 258 of 272 of ... 40 8.1
41gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, comp... 40 8.1
42gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosom... 40 8.1
43gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ... 40 8.1
44gb|U80453.1| Caenorhabditis elegans cosmid C23H3, complete sequence 40 8.1
45emb|Z79640.1|CICOS2 Ciona intestinalis DNA sequence from cosmid ... 40 8.1
46gb|AF186191.6| Homo sapiens chromosome 8 clone CTC-259J15 map 8q... 40 8.1
47gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete seq... 40 8.1
48gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, comp... 40 8.1
49emb|BX470098.15| Zebrafish DNA sequence from clone DKEY-148D16 i... 40 8.1
50gb|AC155642.6| Mus musculus 10 BAC RP24-117F24 (Roswell Park Can... 40 8.1
51emb|BX005162.9| Mouse DNA sequence from clone RP23-359O2 on chro... 40 8.1
52gb|AF155238.4| Homo sapiens chromosome 8 clone GS1-180I23 map 8q... 40 8.1
53emb|BX890616.5| Zebrafish DNA sequence from clone DKEY-159A18 in... 40 8.1
54emb|AL954768.7| Zebrafish DNA sequence from clone CH211-254L23 i... 40 8.1
55gb|AC174448.2| Mus musculus BAC clone RP23-204P24 from chromosom... 40 8.1
56emb|BX005136.8| Mouse DNA sequence from clone RP23-449C14 on chr... 40 8.1
57gb|AC117775.8| Mus musculus chromosome 16, clone RP24-535F23, co... 40 8.1
58emb|AL672278.12| Mouse DNA sequence from clone RP23-465H23 on ch... 40 8.1 
>ref|XM_476701.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2254

 Score =  297 bits (150), Expect = 2e-77
 Identities = 297/346 (85%)
 Strand = Plus / Minus

                                                                        
Query: 252  accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 311
            ||||||||| |||||| |  | |||||||| |||| |||||||||||| ||||| |||| 
Sbjct: 1866 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 1807

                                                                        
Query: 312  caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 371
            ||  |||||||| ||||  ||||||||||| || ||||| ||  ||||||||||||||||
Sbjct: 1806 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 1747

                                                                        
Query: 372  tgctttgtccatccatttcatcattctgtccaaatcttctggagacaatgaagacatagc 431
            ||||  ||||||||||||||||||||| |||||| | || ||||| ||||||||||  ||
Sbjct: 1746 tgctcggtccatccatttcatcattctatccaaagcctcaggagataatgaagacaaggc 1687

                                                                        
Query: 432  ttgttgagctttggcagcatcctccttcgacagcttcataccaaactgctcacccatgtt 491
            || |||||||||||||||||||||||||| ||  ||||| ||||||||||||| |||| |
Sbjct: 1686 ttcttgagctttggcagcatcctccttcgtcattttcattccaaactgctcactcatgct 1627

                                                                        
Query: 492  tgccatcacatcaggactcatgttcttcaccatggatgcaaacatctgccgcatagcagg 551
            || |||||  || ||||| |||||||||| |||||||||| |||||| |||||| |||||
Sbjct: 1626 tgacatcatctctggactgatgttcttcatcatggatgcatacatcttccgcatcgcagg 1567

                                                          
Query: 552  gtctttcatataatttctcatggtttcttgcatatcagctgtagaa 597
             |||||||||  ||||||||||||||| ||||||||||||||||||
Sbjct: 1566 atctttcatagcatttctcatggtttcctgcatatcagctgtagaa 1521
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>dbj|AK065877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050G10, full
            insert sequence
          Length = 2254

 Score =  297 bits (150), Expect = 2e-77
 Identities = 297/346 (85%)
 Strand = Plus / Minus

                                                                        
Query: 252  accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 311
            ||||||||| |||||| |  | |||||||| |||| |||||||||||| ||||| |||| 
Sbjct: 1866 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 1807

                                                                        
Query: 312  caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 371
            ||  |||||||| ||||  ||||||||||| || ||||| ||  ||||||||||||||||
Sbjct: 1806 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 1747

                                                                        
Query: 372  tgctttgtccatccatttcatcattctgtccaaatcttctggagacaatgaagacatagc 431
            ||||  ||||||||||||||||||||| |||||| | || ||||| ||||||||||  ||
Sbjct: 1746 tgctcggtccatccatttcatcattctatccaaagcctcaggagataatgaagacaaggc 1687

                                                                        
Query: 432  ttgttgagctttggcagcatcctccttcgacagcttcataccaaactgctcacccatgtt 491
            || |||||||||||||||||||||||||| ||  ||||| ||||||||||||| |||| |
Sbjct: 1686 ttcttgagctttggcagcatcctccttcgtcattttcattccaaactgctcactcatgct 1627

                                                                        
Query: 492  tgccatcacatcaggactcatgttcttcaccatggatgcaaacatctgccgcatagcagg 551
            || |||||  || ||||| |||||||||| |||||||||| |||||| |||||| |||||
Sbjct: 1626 tgacatcatctctggactgatgttcttcatcatggatgcatacatcttccgcatcgcagg 1567

                                                          
Query: 552  gtctttcatataatttctcatggtttcttgcatatcagctgtagaa 597
             |||||||||  ||||||||||||||| ||||||||||||||||||
Sbjct: 1566 atctttcatagcatttctcatggtttcctgcatatcagctgtagaa 1521
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>dbj|AK062039.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A01, full
           insert sequence
          Length = 1183

 Score =  297 bits (150), Expect = 2e-77
 Identities = 297/346 (85%)
 Strand = Plus / Minus

                                                                       
Query: 252 accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 311
           ||||||||| |||||| |  | |||||||| |||| |||||||||||| ||||| |||| 
Sbjct: 813 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 754

                                                                       
Query: 312 caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 371
           ||  |||||||| ||||  ||||||||||| || ||||| ||  ||||||||||||||||
Sbjct: 753 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 694

                                                                       
Query: 372 tgctttgtccatccatttcatcattctgtccaaatcttctggagacaatgaagacatagc 431
           ||||  ||||||||||||||||||||| |||||| | || ||||| ||||||||||  ||
Sbjct: 693 tgctcggtccatccatttcatcattctatccaaagcctcaggagataatgaagacaaggc 634

                                                                       
Query: 432 ttgttgagctttggcagcatcctccttcgacagcttcataccaaactgctcacccatgtt 491
           || |||||||||||||||||||||||||| ||  ||||| ||||||||||||| |||| |
Sbjct: 633 ttcttgagctttggcagcatcctccttcgtcattttcattccaaactgctcactcatgct 574

                                                                       
Query: 492 tgccatcacatcaggactcatgttcttcaccatggatgcaaacatctgccgcatagcagg 551
           || |||||  || ||||| |||||||||| |||||||||| |||||| |||||| |||||
Sbjct: 573 tgacatcatctctggactgatgttcttcatcatggatgcatacatcttccgcatcgcagg 514

                                                         
Query: 552 gtctttcatataatttctcatggtttcttgcatatcagctgtagaa 597
            |||||||||  ||||||||||||||| ||||||||||||||||||
Sbjct: 513 atctttcatagcatttctcatggtttcctgcatatcagctgtagaa 468
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  125 bits (63), Expect = 2e-25
 Identities = 126/147 (85%)
 Strand = Plus / Plus

                                                                           
Query: 393     cattctgtccaaatcttctggagacaatgaagacatagcttgttgagctttggcagcatc 452
               |||||| |||||| | || ||||| ||||||||||  |||| ||||||||||||||||||
Sbjct: 3303402 cattctatccaaagcctcaggagataatgaagacaaggcttcttgagctttggcagcatc 3303461

                                                                           
Query: 453     ctccttcgacagcttcataccaaactgctcacccatgtttgccatcacatcaggactcat 512
               |||||||| ||  ||||| ||||||||||||| |||| ||| |||||  || ||||| ||
Sbjct: 3303462 ctccttcgtcattttcattccaaactgctcactcatgcttgacatcatctctggactgat 3303521

                                          
Query: 513     gttcttcaccatggatgcaaacatctg 539
               |||||||| |||||||||| |||||||
Sbjct: 3303522 gttcttcatcatggatgcatacatctg 3303548



 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Plus

                                                                           
Query: 252     accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 311
               ||||||||| |||||| |  | |||||||| |||| |||||||||||| ||||| |||| 
Sbjct: 3302932 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 3302991

                                                                           
Query: 312     caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 371
               ||  |||||||| ||||  ||||||||||| || ||||| ||  ||||||||||||||||
Sbjct: 3302992 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 3303051

                                     
Query: 372     tgctttgtccatccatttcatc 393
               ||||  ||||||||||||||||
Sbjct: 3303052 tgctcggtccatccatttcatc 3303073



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                         
Query: 540     ccgcatagcagggtctttcatataatttctcatggtttcttgcatatcagctgtagaa 597
               |||||| ||||| |||||||||  ||||||||||||||| ||||||||||||||||||
Sbjct: 3303647 ccgcatcgcaggatctttcatagcatttctcatggtttcctgcatatcagctgtagaa 3303704
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1714_H10
          Length = 191580

 Score =  125 bits (63), Expect = 2e-25
 Identities = 126/147 (85%)
 Strand = Plus / Plus

                                                                          
Query: 393    cattctgtccaaatcttctggagacaatgaagacatagcttgttgagctttggcagcatc 452
              |||||| |||||| | || ||||| ||||||||||  |||| ||||||||||||||||||
Sbjct: 113095 cattctatccaaagcctcaggagataatgaagacaaggcttcttgagctttggcagcatc 113154

                                                                          
Query: 453    ctccttcgacagcttcataccaaactgctcacccatgtttgccatcacatcaggactcat 512
              |||||||| ||  ||||| ||||||||||||| |||| ||| |||||  || ||||| ||
Sbjct: 113155 ctccttcgtcattttcattccaaactgctcactcatgcttgacatcatctctggactgat 113214

                                         
Query: 513    gttcttcaccatggatgcaaacatctg 539
              |||||||| |||||||||| |||||||
Sbjct: 113215 gttcttcatcatggatgcatacatctg 113241



 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Plus

                                                                          
Query: 252    accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 311
              ||||||||| |||||| |  | |||||||| |||| |||||||||||| ||||| |||| 
Sbjct: 112625 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 112684

                                                                          
Query: 312    caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 371
              ||  |||||||| ||||  ||||||||||| || ||||| ||  ||||||||||||||||
Sbjct: 112685 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 112744

                                    
Query: 372    tgctttgtccatccatttcatc 393
              ||||  ||||||||||||||||
Sbjct: 112745 tgctcggtccatccatttcatc 112766



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                        
Query: 540    ccgcatagcagggtctttcatataatttctcatggtttcttgcatatcagctgtagaa 597
              |||||| ||||| |||||||||  ||||||||||||||| ||||||||||||||||||
Sbjct: 113340 ccgcatcgcaggatctttcatagcatttctcatggtttcctgcatatcagctgtagaa 113397
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>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 131209

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 96     aaagaataaacaatggtacaaaat 119
              ||||||||||||||||||||||||
Sbjct: 125667 aaagaataaacaatggtacaaaat 125644
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>emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 in linkage group 20,
              complete sequence
          Length = 196432

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 379    tccatccatttcatcattctgtc 401
              |||||||||||||||||||||||
Sbjct: 135064 tccatccatttcatcattctgtc 135086
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>emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in linkage group 20,
             complete sequence
          Length = 166824

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 379   tccatccatttcatcattctgtc 401
             |||||||||||||||||||||||
Sbjct: 86345 tccatccatttcatcattctgtc 86323
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>ref|NM_203078.1| Arabidopsis thaliana unknown protein AT5G18940 transcript variant
            AT5G18940.2 mRNA, complete cds
          Length = 1413

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 562  taatttctcatggtttcttgc 582
            |||||||||||||||||||||
Sbjct: 1035 taatttctcatggtttcttgc 1015
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>ref|NM_121899.2| Arabidopsis thaliana unknown protein AT5G18940 transcript variant
            AT5G18940.1 mRNA, complete cds
          Length = 1479

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 562  taatttctcatggtttcttgc 582
            |||||||||||||||||||||
Sbjct: 1101 taatttctcatggtttcttgc 1081
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>gb|DQ232883.1| Homo sapiens tripartite motif protein 69 (TRIM69) mRNA, complete cds
          Length = 2435

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 2024 gtcttctttgctacttctact 2004
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>gb|AC165085.3| Mus musculus BAC clone RP23-222G22 from chromosome 6, complete sequence
          Length = 201337

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 398   tgtccaaatcttctggagaca 418
             |||||||||||||||||||||
Sbjct: 48289 tgtccaaatcttctggagaca 48269
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>ref|XM_523194.1| PREDICTED: Pan troglodytes similar to Ring finger protein 36, isoform
            a (LOC467799), mRNA
          Length = 1359

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 1019 gtcttctttgctacttctact 999
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>gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome 6, complete
           sequence
          Length = 218138

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 398 tgtccaaatcttctggagaca 418
           |||||||||||||||||||||
Sbjct: 182 tgtccaaatcttctggagaca 202
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>gb|AY305385.1| Homo sapiens HSD-34 mRNA, complete cds
          Length = 1544

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 1204 gtcttctttgctacttctact 1184
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>gb|BT012002.1| Arabidopsis thaliana At5g18940 mRNA sequence
          Length = 1029

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 562 taatttctcatggtttcttgc 582
           |||||||||||||||||||||
Sbjct: 912 taatttctcatggtttcttgc 892
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>ref|XM_535459.2| PREDICTED: Canis familiaris similar to ring finger protein 36
            (predicted) (LOC478285), mRNA
          Length = 1685

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 1299 gtcttctttgctacttctact 1279
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>gb|BC047945.1| Homo sapiens ring finger protein 36, transcript variant a, mRNA (cDNA
            clone MGC:50818 IMAGE:5744224), complete cds
          Length = 1765

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 1343 gtcttctttgctacttctact 1323
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>gb|BC033314.1| Homo sapiens ring finger protein 36, transcript variant b, mRNA
           (cDNA clone MGC:35082 IMAGE:5166812), complete cds
          Length = 1249

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 343 gtcttctttgctacttctact 363
           |||||||||||||||||||||
Sbjct: 825 gtcttctttgctacttctact 805
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>gb|AC087828.6| Homo sapiens chromosome 15, clone RP11-292P13, complete sequence
          Length = 185324

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 343   gtcttctttgctacttctact 363
             |||||||||||||||||||||
Sbjct: 76650 gtcttctttgctacttctact 76630
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>gb|AC132058.5| Rattus norvegicus 18 BAC CH230-229M9 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 228492

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 564    atttctcatggtttcttgcat 584
              |||||||||||||||||||||
Sbjct: 214529 atttctcatggtttcttgcat 214509
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>gb|BC024199.1| Homo sapiens ring finger protein 36, mRNA (cDNA clone IMAGE:4822946),
            partial cds
          Length = 1670

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 1324 gtcttctttgctacttctact 1304
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>gb|AC157607.4| Mus musculus chromosome 1, clone RP23-401G11, complete sequence
          Length = 200421

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   aataaacaatggtacaaaatg 120
             |||||||||||||||||||||
Sbjct: 61339 aataaacaatggtacaaaatg 61359
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>gb|AC122108.2| Homo sapiens chromosome 15 clone CTD-2008A1 map 15q21.1, complete
             sequence
          Length = 141944

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 343   gtcttctttgctacttctact 363
             |||||||||||||||||||||
Sbjct: 60329 gtcttctttgctacttctact 60309
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>gb|AF302089.1|AF302089 Homo sapiens TRIMLESS beta (TRIMLESS) mRNA, complete cds
          Length = 1231

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 343 gtcttctttgctacttctact 363
           |||||||||||||||||||||
Sbjct: 834 gtcttctttgctacttctact 814
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>gb|AF302088.1|AF302088 Homo sapiens TRIMLESS alpha (TRIMLESS) mRNA, complete cds
          Length = 1282

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 343 gtcttctttgctacttctact 363
           |||||||||||||||||||||
Sbjct: 885 gtcttctttgctacttctact 865
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>ref|NM_080745.3| Homo sapiens ring finger protein 36 (RNF36), transcript variant b,
            mRNA
          Length = 1434

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 1029 gtcttctttgctacttctact 1009
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>ref|NM_182985.3| Homo sapiens ring finger protein 36 (RNF36), transcript variant a,
            mRNA
          Length = 1911

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 1506 gtcttctttgctacttctact 1486
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>gb|AC091245.2| Homo sapiens chromosome 15 clone RP11-456H13 map 15q15, complete
             sequence
          Length = 194311

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 343   gtcttctttgctacttctact 363
             |||||||||||||||||||||
Sbjct: 32733 gtcttctttgctacttctact 32713
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>dbj|AB168995.1| Macaca fascicularis testis cDNA, clone: QtsA-16427, similar to human
            ring finger protein 36 (RNF36), transcript variant
            a,mRNA, RefSeq: NM_182985.2
          Length = 1699

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 343  gtcttctttgctacttctact 363
            |||||||||||||||||||||
Sbjct: 1177 gtcttctttgctacttctact 1157
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>gb|AC018901.8| Homo sapiens chromosome 15 clone RP11-292P13 map 15q15, complete
             sequence
          Length = 199503

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 343   gtcttctttgctacttctact 363
             |||||||||||||||||||||
Sbjct: 90803 gtcttctttgctacttctact 90783
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>emb|BX829741.1|CNS0A1YL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB32ZG12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1247

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 562  taatttctcatggtttcttgc 582
            |||||||||||||||||||||
Sbjct: 1009 taatttctcatggtttcttgc 989
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>emb|BX829534.1|CNS0A09C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB19ZE06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1405

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 562  taatttctcatggtttcttgc 582
            |||||||||||||||||||||
Sbjct: 1065 taatttctcatggtttcttgc 1045
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>emb|BX831054.1|CNS09ZCF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS53ZG04 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1375

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 562  taatttctcatggtttcttgc 582
            |||||||||||||||||||||
Sbjct: 1145 taatttctcatggtttcttgc 1125
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>emb|BX833618.1|CNS09Z1H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL66ZC02 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1334

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 562  taatttctcatggtttcttgc 582
            |||||||||||||||||||||
Sbjct: 1013 taatttctcatggtttcttgc 993
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>gb|AY088359.1| Arabidopsis thaliana clone 6139 mRNA, complete sequence
          Length = 1474

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 562  taatttctcatggtttcttgc 582
            |||||||||||||||||||||
Sbjct: 1098 taatttctcatggtttcttgc 1078
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>gb|AC068655.3|AC068655 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome
            V, complete sequence
          Length = 89453

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 562  taatttctcatggtttcttgc 582
            |||||||||||||||||||||
Sbjct: 8400 taatttctcatggtttcttgc 8420
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>emb|AL360161.1|HST000218 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1621663
          Length = 1200

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 343 gtcttctttgctacttctact 363
           |||||||||||||||||||||
Sbjct: 872 gtcttctttgctacttctact 852
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>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence
          Length = 252334

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tcagcatgacaatagctagg 309
             ||||||||||||||||||||
Sbjct: 54126 tcagcatgacaatagctagg 54145
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>gb|AE006899.1| Sulfolobus solfataricus P2 section 258 of 272 of the complete genome
          Length = 10222

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 510  catgttcttcaccatggatg 529
            ||||||||||||||||||||
Sbjct: 6393 catgttcttcaccatggatg 6374
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>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence
          Length = 274518

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  tcagcatgacaatagctagg 309
            ||||||||||||||||||||
Sbjct: 2874 tcagcatgacaatagctagg 2855
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>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence
          Length = 187246

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   tcagcatgacaatagctagg 309
             ||||||||||||||||||||
Sbjct: 12179 tcagcatgacaatagctagg 12160
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>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     cagcctagtgtccaaatgac 44
              ||||||||||||||||||||
Sbjct: 101920 cagcctagtgtccaaatgac 101939
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>gb|U80453.1| Caenorhabditis elegans cosmid C23H3, complete sequence
          Length = 39721

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tttctcatggtttcttgcat 584
             ||||||||||||||||||||
Sbjct: 16876 tttctcatggtttcttgcat 16857
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>emb|Z79640.1|CICOS2 Ciona intestinalis DNA sequence from cosmid COS2
          Length = 38546

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 126   gactcttcccacagtgcttccaca 149
             |||||||| |||||||||||||||
Sbjct: 30578 gactcttcacacagtgcttccaca 30555
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>gb|AF186191.6| Homo sapiens chromosome 8 clone CTC-259J15 map 8q24.3, complete
             sequence
          Length = 104637

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   gagacaatgaagacatagct 432
             ||||||||||||||||||||
Sbjct: 93394 gagacaatgaagacatagct 93413
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>gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete sequence
          Length = 135880

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 518    tcaccatggatgcaaacatc 537
              ||||||||||||||||||||
Sbjct: 135605 tcaccatggatgcaaacatc 135624
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>gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, complete sequence
          Length = 189207

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    gagacaatgaagacatagct 432
              ||||||||||||||||||||
Sbjct: 178602 gagacaatgaagacatagct 178583
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>emb|BX470098.15| Zebrafish DNA sequence from clone DKEY-148D16 in linkage group 12,
              complete sequence
          Length = 249826

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    caaaatgttcttgactcttc 133
              ||||||||||||||||||||
Sbjct: 165096 caaaatgttcttgactcttc 165077



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    caaaatgttcttgactcttc 133
              ||||||||||||||||||||
Sbjct: 164217 caaaatgttcttgactcttc 164198



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    caaaatgttcttgactcttc 133
              ||||||||||||||||||||
Sbjct: 163736 caaaatgttcttgactcttc 163717
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>gb|AC155642.6| Mus musculus 10 BAC RP24-117F24 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 195095

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 407   cttctggagacaatgaagacatag 430
             ||||||||||| ||||||||||||
Sbjct: 61760 cttctggagaccatgaagacatag 61783
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>emb|BX005162.9| Mouse DNA sequence from clone RP23-359O2 on chromosome X, complete
             sequence
          Length = 83075

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tttctcatggtttcttgcat 584
             ||||||||||||||||||||
Sbjct: 12004 tttctcatggtttcttgcat 11985
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>gb|AF155238.4| Homo sapiens chromosome 8 clone GS1-180I23 map 8q24.3, complete
             sequence
          Length = 104923

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   gagacaatgaagacatagct 432
             ||||||||||||||||||||
Sbjct: 52765 gagacaatgaagacatagct 52784
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>emb|BX890616.5| Zebrafish DNA sequence from clone DKEY-159A18 in linkage group 4,
             complete sequence
          Length = 74749

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    aataatctgttacaatttac 85
             ||||||||||||||||||||
Sbjct: 35606 aataatctgttacaatttac 35625
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>emb|AL954768.7| Zebrafish DNA sequence from clone CH211-254L23 in linkage group 12,
             complete sequence
          Length = 159442

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   caaaatgttcttgactcttc 133
             ||||||||||||||||||||
Sbjct: 48464 caaaatgttcttgactcttc 48483



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   caaaatgttcttgactcttc 133
             ||||||||||||||||||||
Sbjct: 48131 caaaatgttcttgactcttc 48150
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>gb|AC174448.2| Mus musculus BAC clone RP23-204P24 from chromosome 16, complete
             sequence
          Length = 198814

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   ttcttcgtcttctttgctac 356
             ||||||||||||||||||||
Sbjct: 39492 ttcttcgtcttctttgctac 39511
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>emb|BX005136.8| Mouse DNA sequence from clone RP23-449C14 on chromosome 2, complete
              sequence
          Length = 178200

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    tggagacaatgaagacatag 430
              ||||||||||||||||||||
Sbjct: 169706 tggagacaatgaagacatag 169725
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>gb|AC117775.8| Mus musculus chromosome 16, clone RP24-535F23, complete sequence
          Length = 127815

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   ttcttcgtcttctttgctac 356
             ||||||||||||||||||||
Sbjct: 71685 ttcttcgtcttctttgctac 71666
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>emb|AL672278.12| Mouse DNA sequence from clone RP23-465H23 on chromosome 16, complete
             sequence
          Length = 187418

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   ttcttcgtcttctttgctac 356
             ||||||||||||||||||||
Sbjct: 18555 ttcttcgtcttctttgctac 18536


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,319,110
Number of Sequences: 3902068
Number of extensions: 5319110
Number of successful extensions: 102745
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102593
Number of HSP's gapped (non-prelim): 152
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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