ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger prot... 104 2e-22
2Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2... 101 1e-21
3Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2... 100 3e-21
4ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing ... 100 5e-21
5ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing ... 97 3e-20
6ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing ... 96 6e-20
7ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expr... 50 6e-06
8ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expres... 47 3e-05
9ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expr... 47 3e-05
10ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog 47 3e-05
11ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B 36 0.092
12ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B 34 0.27
13ZFN2B_HUMAN (Q8WV99) AN1-type zinc finger protein 2B 32 1.3
14NORQ_PARDE (Q51664) Protein norQ 32 1.7
15UL35_HCMVA (P16766) Protein UL35 30 3.9
16SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (A... 30 3.9
17SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF 30 3.9
18HM14_CAEEL (P20271) Homeobox protein ceh-14 30 5.0
19CO9_MOUSE (P06683) Complement component C9 precursor 30 5.0
20YVDC_LACLA (Q9CE03) Hypothetical UPF0177 protein yvdC 30 6.6
21DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Digl... 30 6.6
22ALG2_CANGA (Q6FJJ9) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1... 30 6.6
23VG40_ICHV1 (Q00145) Hypothetical gene 40 protein 30 6.6
24IL17E_HUMAN (Q9H293) Interleukin-17E precursor (IL-17E) (Interle... 29 8.6
25PA2X_BUNFA (P14411) Phospholipase A2 isozyme X, basic (EC 3.1.1.... 29 8.6
26LRP4_RAT (Q9QYP1) Low-density lipoprotein receptor-related prote... 29 8.6

>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1|
           (Stress-associated protein 1) (OsISAP1)
          Length = 164

 Score =  104 bits (259), Expect = 2e-22
 Identities = 46/94 (48%), Positives = 62/94 (65%)
 Frame = -2

Query: 568 AVAQVDVKALVVQPAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCS 389
           A   V+ +A +  P  ++A           +    NRCS CRKRVGLTGF CRCG+++C 
Sbjct: 68  AAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCG 127

Query: 388 LHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKL 287
            HRYSD+H C +DY++AARDAIA+ NPVV+A K+
Sbjct: 128 EHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161



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>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger|
           protein 216)
          Length = 213

 Score =  101 bits (252), Expect = 1e-21
 Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
 Frame = -2

Query: 541 LVVQPAADVA--GTSEAVAVSPKR-KEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSD 371
           +V QP+  V+   TS++   +P+  K   NRC  CRK+VGLTGF+CRCGN++C LHRYSD
Sbjct: 123 VVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSD 182

Query: 370 KHDCQFDYRTAARDAIAKANPVVKAEKLDKI 278
           KH+C +DY+  A   I K NPVV AEK+ +I
Sbjct: 183 KHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213



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>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger|
           protein 216)
          Length = 213

 Score =  100 bits (249), Expect = 3e-21
 Identities = 49/93 (52%), Positives = 62/93 (66%), Gaps = 5/93 (5%)
 Frame = -2

Query: 541 LVVQPAADVAGTS-----EAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRY 377
           +V QP+  V+  S     E     PK K+  NRC  CRK+VGLTGF+CRCGN++C LHRY
Sbjct: 123 VVTQPSPSVSQPSSSQSEEKAPELPKPKK--NRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180

Query: 376 SDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 278
           SDKH+C +DY+  A   I K NPVV AEK+ +I
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213



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>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein|
           At1g12440
          Length = 168

 Score = 99.8 bits (247), Expect = 5e-21
 Identities = 43/78 (55%), Positives = 57/78 (73%)
 Frame = -2

Query: 511 GTSEAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAAR 332
           G S A  + P  K    RC +C K+VG+TGF CRCG+ +C  HRY + H+CQFD++  AR
Sbjct: 92  GDSAAAPLDPP-KSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAR 150

Query: 331 DAIAKANPVVKAEKLDKI 278
           +AIAKANPVVKA+K+D+I
Sbjct: 151 EAIAKANPVVKADKVDRI 168



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>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein|
           At4g12040
          Length = 175

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = -2

Query: 574 EVAVAQVDVKALVVQPAADVAGTSEAVAVSPKRKEGPN-RCSTCRKRVGLTGFNCRCGNM 398
           E+  A ++   +  +P++ V   +E     P R   PN RC +C K+VG+ GF C+CG+ 
Sbjct: 77  EIKPAHLETVVVTAEPSS-VPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGST 135

Query: 397 YCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 278
           +C  HRY +KH+C FD++   RDAIAKANP+VKA+K+ +I
Sbjct: 136 FCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175



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>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein|
           At2g36320
          Length = 161

 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 41/69 (59%), Positives = 50/69 (72%)
 Frame = -2

Query: 484 PKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPV 305
           P   + PNRC+ CRKRVGLTGF CRCG  +C  HRY + H C FD+++A R+ IAKANP+
Sbjct: 93  PSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPL 152

Query: 304 VKAEKLDKI 278
           V A KL KI
Sbjct: 153 VIAAKLQKI 161



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>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = -2

Query: 562 AQVDVKALVVQPAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLTGF---NCRCGNMYC 392
           +Q + +A  V+    +  T  +   S  +++   RC  C+ ++ L      +CRCG ++C
Sbjct: 122 SQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFC 181

Query: 391 SLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDK 281
            LHR  ++HDC FD+    R+       ++K  KLD+
Sbjct: 182 MLHRLPEQHDCTFDHMGRGRE-----EAIMKMVKLDR 213



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>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -2

Query: 478 RKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANP 308
           +++   RC  C+ ++ L      +CRCG ++C LHR  ++HDC FD+    R+       
Sbjct: 150 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EA 204

Query: 307 VVKAEKLDK 281
           ++K  KLD+
Sbjct: 205 IMKMVKLDR 213



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>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -2

Query: 478 RKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANP 308
           +++   RC  C+ ++ L      +CRCG ++C LHR  ++HDC FD+    R+       
Sbjct: 150 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EA 204

Query: 307 VVKAEKLDK 281
           ++K  KLD+
Sbjct: 205 IMKMVKLDR 213



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>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog|
          Length = 226

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = -2

Query: 487 SPKRKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAK 317
           S  +++   RC  C+ ++ L      +CRCG ++C LHR  ++HDC FD+    R+    
Sbjct: 146 SRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE---- 201

Query: 316 ANPVVKAEKLDK 281
              ++K  KLD+
Sbjct: 202 -EAIMKMVKLDR 212



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>ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 35.8 bits (81), Expect = 0.092
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 481 KRKEGPNRC--STCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 320
           KRK   N+C  S CR+R  +     RCG  +C  HR+   HDC  +    +R  +A
Sbjct: 92  KRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHDCSGEGHPTSRAGLA 147



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>ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 481 KRKEGPNRC--STCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 320
           KRK   N+C  S CR+R  +     RCG  +C  HR+   H+C  +    +R  +A
Sbjct: 92  KRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHECSGEGHQTSRAGLA 147



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>ZFN2B_HUMAN (Q8WV99) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 481 KRKEGPNRCST--CRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 320
           KRK   N+C    CR+R  +     RC   +C  HR+   HDC  +    +R  +A
Sbjct: 92  KRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGHPTSRAGLA 147



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>NORQ_PARDE (Q51664) Protein norQ|
          Length = 270

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 290 ARQDLGVL-QGRNGCNLPRFIIHLCCAILAPPFLVGCH 180
           A  DL VL +G  GC   RF+ H+   +  P + V CH
Sbjct: 32  AANDLPVLLKGPTGCGKTRFVAHMAARLGRPLYTVACH 69



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>UL35_HCMVA (P16766) Protein UL35|
          Length = 640

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 20/83 (24%), Positives = 35/83 (42%)
 Frame = +1

Query: 331 P*LQSGSRTGSHACRNSGAANSTCYRICS*IPLAQPSSCKLSTDSAPPSSWGSXXXXXXX 510
           P   + S + + +  +S + NS        +P A+ SS + +T ++  +S G+       
Sbjct: 495 PVTDAASSSSASSSSSSASPNSVS------LPSARSSSTRTTTPASTYTSAGTSSTTGLL 548

Query: 511 XXXXXXXXXXVPSRQLEQPPPQR 579
                     + S  LEQPP QR
Sbjct: 549 LSSSLSGSHGISSADLEQPPRQR 571



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>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
            helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
            (SMUBP-2) (Glial factor 1) (GF-1)
          Length = 993

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = -2

Query: 529  PAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLT--GFNCR-CGNMYCSLHRYSDKHDC 359
            PA D+    +  A+     +  N C   +   G+T  G  C+ C   YC  H   + H C
Sbjct: 873  PATDLPTEEDFEALVSAAVKADNTCGFAKCTAGVTTLGQFCQLCSRRYCLSHHLPEIHGC 932

Query: 358  QFDYRTAARDAIAK 317
                R  AR  I++
Sbjct: 933  GERARAHARQRISR 946



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>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -2

Query: 544 ALVVQPAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVG-LTGFNCRCGNMYCSLHRYSDK 368
           AL+VQP A    + E + V    + GP RCS C+  V     F  +     C+L  Y+D+
Sbjct: 405 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 464

Query: 367 ----HDCQFDYRTAARDA 326
               + C        RDA
Sbjct: 465 TPRDYQCNLGPDGRRRDA 482



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>HM14_CAEEL (P20271) Homeobox protein ceh-14|
          Length = 351

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 460 RCSTCRKRVGLTGFNCRCGNMYCSLHRY 377
           RCSTC+  +G T F  R  +MYC  H Y
Sbjct: 74  RCSTCKDELGATCF-LREDSMYCRAHFY 100



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>CO9_MOUSE (P06683) Complement component C9 precursor|
          Length = 548

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 460 RCST--CRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAK 317
           +C T  C KR  L   +  CG+       YSD++DC  D RT  RD +A+
Sbjct: 104 QCETGRCIKRRLLCNGDNDCGD-------YSDENDCDDDPRTPCRDRVAE 146



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>YVDC_LACLA (Q9CE03) Hypothetical UPF0177 protein yvdC|
          Length = 261

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
 Frame = -2

Query: 295 EKLDKI*VSYREEMVAICQGSSSIFAVPSLHLPFLLAATFPKLYGIVM--HTASWQLQEL 122
           EKL  +   YR  +V I     S  +V   HLPFL+ A    + G++   H + W +  L
Sbjct: 5   EKLQSL-AKYRWVIVIILALLFSALSVSIFHLPFLMTALVLSIVGLIFAYHKSVWLV--L 61

Query: 121 NPLSHSEWFACCV------------TLFMVVFSVSIVASH 38
             LS+    A  +             +F ++F ++I++S+
Sbjct: 62  FILSNLPMLATTIFAYQHHFTTLDTVIFFIIFLLTIISSY 101



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>DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase|
           1) (DGK 1) (DAG kinase 1)
          Length = 1020

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 460 RCSTCRKRV----GLTGFNCR-CGNMYCSLHRYSDKHDC 359
           RCS CRKR+    G+TG  CR C  M  +    S K +C
Sbjct: 269 RCSKCRKRIKAYHGITGLTCRWCHMMLHNRCASSVKKEC 307



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>ALG2_CANGA (Q6FJJ9) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)|
           (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol
           mannosyltransferase) (Asparagine-linked glycosylation
           protein 2)
          Length = 458

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 412 RCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI--*VSYREEMVAICQ 239
           +C N Y S++RY  K + +   +  A+ ++   N VV      +I   V Y +E+  +C+
Sbjct: 215 KCPNFYLSINRYERKKNIELAIQAFAKASVENTNLVVCGGYDPRIHENVQYLQELTCLCK 274



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>VG40_ICHV1 (Q00145) Hypothetical gene 40 protein|
          Length = 136

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 294 RSSTRFRCPTGKKWLQSAKVHHPSLLCHPCTSLSCWLPHFLNCTAS*CTLRRGS 133
           RS++ F C    + L   ++  PS+    CT+ SCW  H L  +++   +RR S
Sbjct: 26  RSNSWFVCKIVYRCLSPRRIISPSI----CTAFSCWANHGLRLSST-AAMRRSS 74



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>IL17E_HUMAN (Q9H293) Interleukin-17E precursor (IL-17E) (Interleukin-25)|
           (IL-25)
          Length = 177

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +1

Query: 247 LQPFLPCRTPKSCRASLPSPLG----WPWRW 327
           L+P  P R P+SCRAS   PL      PWR+
Sbjct: 62  LEPARPNRHPESCRASEDGPLNSRAISPWRY 92



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>PA2X_BUNFA (P14411) Phospholipase A2 isozyme X, basic (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 118

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = +3

Query: 129 CSCHDAVCITM---PYNLGNVAANKKGRCK 209
           C C  A  I     PYNL N   NKK  CK
Sbjct: 89  CDCDRAAAICFAAAPYNLSNFGINKKTHCK 118



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>LRP4_RAT (Q9QYP1) Low-density lipoprotein receptor-related protein 4 precursor|
            (Multiple epidermal growth factor-like domains 7)
          Length = 1905

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 523  ADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDC 359
            A+V G  + + VSP+R+ G N C           F  R  +  C+     D H C
Sbjct: 1595 ANVEGLMDIIVVSPQRQTGTNACGVNNGGCSHLCF-ARASDFVCACPDEPDSHPC 1648


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,371,636
Number of Sequences: 219361
Number of extensions: 1867980
Number of successful extensions: 5779
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5776
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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