ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16i21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF410153.1| Swinepox virus isolate 17077-99, complete genome 40 2.5
2emb|Z99281.1|CEY57G11C Caenorhabditis elegans YAC Y57G11C, compl... 40 2.5
3ref|XM_632183.1| Dictyostelium discoideum actin binding protein ... 38 9.8
4gb|AY617965.1| Sterkiella histriomuscorum clone UGC1O0006_K14_R ... 38 9.8
5gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, co... 38 9.8
6gb|AY206263.1| Arabidopsis thaliana resistance protein Cvi3 pseu... 38 9.8
7emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in ... 38 9.8
8gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 38 9.8
9gb|AC145458.3| Cicer arietinum strain FLIP84-92C clone gl1-4n10,... 38 9.8
10gb|AF057019.1|AF057019 Dictyostelium discoideum interaptin (abpD... 38 9.8
11gb|AC107768.25| Mus musculus chromosome 18, clone RP23-144B22, c... 38 9.8
12emb|AL732425.7| Mouse DNA sequence from clone RP23-364L1 on chro... 38 9.8

>gb|AF410153.1| Swinepox virus isolate 17077-99, complete genome
          Length = 146454

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ggtttatattttgaaacagt 20
             ||||||||||||||||||||
Sbjct: 85621 ggtttatattttgaaacagt 85602



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>emb|Z99281.1|CEY57G11C Caenorhabditis elegans YAC Y57G11C, complete sequence
          Length = 313573

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      gtttatattttgaaacagta 21
              ||||||||||||||||||||
Sbjct: 254513 gtttatattttgaaacagta 254532



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>ref|XM_632183.1| Dictyostelium discoideum actin binding protein (DDB0191136), partial
            mRNA
          Length = 5217

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 129  ggatcaattacatttacaa 147
            |||||||||||||||||||
Sbjct: 4395 ggatcaattacatttacaa 4413



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>gb|AY617965.1| Sterkiella histriomuscorum clone UGC1O0006_K14_R genomic sequence
          Length = 569

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 95  cccattacttaattaagct 113
           |||||||||||||||||||
Sbjct: 312 cccattacttaattaagct 294



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>gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, complete sequence
          Length = 172228

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 8     attttgaaacagtagnagagta 29
             ||||||||||||||| ||||||
Sbjct: 68322 attttgaaacagtagaagagta 68301



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>gb|AY206263.1| Arabidopsis thaliana resistance protein Cvi3 pseudogene, complete
            sequence
          Length = 7785

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 149  ggactgaccgactgagtca 167
            |||||||||||||||||||
Sbjct: 2316 ggactgaccgactgagtca 2334



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>emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in linkage group 16,
             complete sequence
          Length = 127034

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    tacatttgtagcatatata 46
             |||||||||||||||||||
Sbjct: 18889 tacatttgtagcatatata 18871



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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      ggtttatattttgaaacag 19
              |||||||||||||||||||
Sbjct: 445668 ggtttatattttgaaacag 445686



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>gb|AC145458.3| Cicer arietinum strain FLIP84-92C clone gl1-4n10, complete sequence
          Length = 28712

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    tacatttgtagcatatata 46
             |||||||||||||||||||
Sbjct: 28423 tacatttgtagcatatata 28441



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>gb|AF057019.1|AF057019 Dictyostelium discoideum interaptin (abpD) gene, complete cds
          Length = 8574

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 129  ggatcaattacatttacaa 147
            |||||||||||||||||||
Sbjct: 6672 ggatcaattacatttacaa 6690



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>gb|AC107768.25| Mus musculus chromosome 18, clone RP23-144B22, complete sequence
          Length = 217847

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    gtacatttgtagcatatat 45
             |||||||||||||||||||
Sbjct: 49666 gtacatttgtagcatatat 49684



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>emb|AL732425.7| Mouse DNA sequence from clone RP23-364L1 on chromosome X, complete
              sequence
          Length = 145042

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 5      tatattttgaaacagtagnaga 26
              |||||||||||||||||| |||
Sbjct: 102964 tatattttgaaacagtaggaga 102985


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,567,367
Number of Sequences: 3902068
Number of extensions: 1567367
Number of successful extensions: 106626
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106555
Number of HSP's gapped (non-prelim): 71
length of query: 198
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 176
effective length of database: 17,147,199,772
effective search space: 3017907159872
effective search space used: 3017907159872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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