ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal16i19 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 211 bits (537), Expect = 1e-54 Identities = 101/130 (77%), Positives = 116/130 (89%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 +N+I RH RLG ATRLAV AWGLKNCT+KEE S+TVTAV+VPP+ID SEIV+ AW+RYN Sbjct: 272 ENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYN 331 Query: 421 LSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLS 242 LSLGLGLNKVAGKVFRIGHLG++NELQLLGCL GVEM+LKD+GYPV +GSGVAAA+ YL Sbjct: 332 LSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQ 391 Query: 241 NSTPLIPSRI 212 + PLIPSRI Sbjct: 392 HHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 145 bits (365), Expect = 1e-34 Identities = 73/119 (61%), Positives = 90/119 (75%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 +NV RH LG ATR AVAAWGLK C + E SDTVTA++ P +D+++I+KHA+ RYN Sbjct: 253 ENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTVTAILAPEGVDAAKIIKHAYVRYN 312 Query: 421 LSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 245 L+LG GL++VAGKVFRIGH+G LNEL LLG + G EM L D G V GSGVAAA++YL Sbjct: 313 LALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 140 bits (352), Expect = 4e-33 Identities = 72/122 (59%), Positives = 87/122 (71%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 DNV RHTRL + R AV AWGLK C ++ + +SDTV+A++VP IDS+ I K A+ RYN Sbjct: 267 DNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRYN 326 Query: 421 LSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLS 242 S GLGLNKVAGKVFRIGHLG L+E+ + G L EM LKD G +KLGSG AAA Y S Sbjct: 327 TSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFS 386 Query: 241 NS 236 + Sbjct: 387 KN 388
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 75.5 bits (184), Expect = 1e-13 Identities = 47/119 (39%), Positives = 67/119 (56%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 +N +KRH RL ATR + A G++ KE S TVT+ P I+ S+ +YN Sbjct: 266 ENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTVTSAKYPEGIEDSKFRGILSNKYN 324 Query: 421 LSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 245 + + G +AGK+FRIGH+G E ++L L VE+ LK++G+ VK SGV A L Sbjct: 325 IVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESGVEVAKEVL 382
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 71.2 bits (173), Expect = 2e-12 Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 1/122 (0%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 +++ RH R ATR A+ A L +E S +TAV P +++ +I KR++ Sbjct: 264 ESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAVATPG-MEADKIRSLMKKRFD 321 Query: 421 LSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP-VKLGSGVAAAAAYL 245 ++L G + ++ K+FR+GHLG +++ +L C+ +E+VL ++G+ G+GVAAAA Sbjct: 322 IALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLLELGHENFNSGAGVAAAARVF 381 Query: 244 SN 239 SN Sbjct: 382 SN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 65.5 bits (158), Expect = 1e-10 Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Frame = -3 Query: 595 VIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLS 416 + +RH RL ATR A+ A L + S +TAV P +++ I KR++++ Sbjct: 266 IFQRHQRLMQATRAAMKALNLP-LYAADSCASPAITAVA-PQGVEAENIRSLMKKRFDIA 323 Query: 415 LGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP-VKLGSGVAAAAAYLSN 239 L G + + G++FRIGHLG + + +L + +E VL ++GY G+GVAAA+ LS Sbjct: 324 LAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTNFTPGAGVAAASRVLST 383 Query: 238 S 236 + Sbjct: 384 A 384
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -3 Query: 454 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 287 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 286 VK 281 VK Sbjct: 135 VK 136
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 38.1 bits (87), Expect = 0.020 Identities = 24/82 (29%), Positives = 36/82 (43%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 +N +RH + GLK + E T+T V VP + +IV + +N Sbjct: 307 ENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFN 366 Query: 421 LSLGLGLNKVAGKVFRIGHLGH 356 + + GL KV RIG LG+ Sbjct: 367 IEISGGLGPSEDKVLRIGLLGY 388
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 38.1 bits (87), Expect = 0.020 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Frame = -3 Query: 589 KRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLG 410 +RH A + A GL+ + VT V +P ID + ++ + + Sbjct: 293 ERHRHHEAALAAGIKAMGLRLFGDDSCKMP-VVTCVEIPGGIDGESVRDMLLAQFGIEIA 351 Query: 409 LGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNS 236 +AGK++RIG +G+ + +L L G+E VL ++ G + AA N+ Sbjct: 352 SSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAALDVYENA 410
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 37.7 bits (86), Expect = 0.026 Identities = 24/81 (29%), Positives = 37/81 (45%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 +N ++H + A GL+ + TVT V VP D +IV + +R+ Sbjct: 307 ENSWRKHREAAAYLHGRLQALGLRLFVKDPALRLPTVTTVAVPTGYDWRDIVSYLIERFG 366 Query: 421 LSLGLGLNKVAGKVFRIGHLG 359 + + GL GKV RIG +G Sbjct: 367 IEITGGLGPSTGKVLRIGLMG 387
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 35.8 bits (81), Expect = 0.098 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -3 Query: 496 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 359 TVT V VP D +IV + +++ + GL GKV RIG LG Sbjct: 342 TVTTVAVPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG 387
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 35.4 bits (80), Expect = 0.13 Identities = 24/81 (29%), Positives = 36/81 (44%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 +N ++H + A GL+ + TVT V VP D +IV + ++ Sbjct: 285 ENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFD 344 Query: 421 LSLGLGLNKVAGKVFRIGHLG 359 + + GL GKV RIG LG Sbjct: 345 IEIMGGLGPSTGKVLRIGLLG 365
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 33.1 bits (74), Expect = 0.64 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -3 Query: 496 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 359 TVT V+VP +IV + + + + GL A KV RIG LG Sbjct: 320 TVTTVIVPASYRWRDIVSYVMHHFGIEITGGLGPSADKVLRIGLLG 365
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.83 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +1 Query: 238 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 330 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +3 Query: 240 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 371 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 238 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 336 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = -3 Query: 595 VIKRHTRLGTATRLAVAAW-GLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNL 419 V +R L TR ++ W GL+ T S +TA +PP D++ + W R+ + Sbjct: 301 VRERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPPGTDTAGLRHGLWDRFRI 360 Query: 418 SLGLGLNKVAGKVFRI 371 + + L++ G + R+ Sbjct: 361 DVPV-LDRPDGPLLRV 375
>SPYA_MOUSE (O35423) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 413 Score = 30.0 bits (66), Expect = 5.4 Identities = 21/82 (25%), Positives = 35/82 (42%) Frame = -3 Query: 601 DNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYN 422 +N +RH + GLK + E T+T V Y + +IV + ++ Sbjct: 307 ENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTAAGY-NWRDIVSYVLDHFS 365 Query: 421 LSLGLGLNKVAGKVFRIGHLGH 356 + + GL +V RIG LG+ Sbjct: 366 IEISGGLGPTEERVLRIGLLGY 387
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 7.0 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +3 Query: 216 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 374 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136
>UCN1_HUMAN (P55089) Urocortin precursor| Length = 124 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -2 Query: 329 PRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNK 162 PRR G G G GE +R + L FH L L++ +Q++ R E+N+ Sbjct: 63 PRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRE--RAEQNR 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,146,003 Number of Sequences: 219361 Number of extensions: 1526063 Number of successful extensions: 6128 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6103 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
