>NU4M_LATCH (O03173) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 461

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = -2

Query: 220 LPTDGLPLLHYYYFPSLPTGGGREWW*PSCSWYGAQANLCAAFPTLPSTPMFVLYHWLPD 41
           L T  +PL+ + Y   L T G   WW                   L   P++ ++ WLP 
Sbjct: 172 LGTLSMPLIQHMYQMKLHTHGDMMWW------------TACLLAFLVKMPLYGVHLWLPK 219

Query: 40  LQIAXPCSSMLVL 2
             +  P +  +VL
Sbjct: 220 AHVEAPIAGSMVL 232

>NU4M_DROME (P18931) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 446

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 103 CAAFPTLPSTPMFVLYHWLPDLQIAXPCSSMLVL 2
           C     L   PMF++Y WLP   +  P S  ++L
Sbjct: 186 CLLCAFLVKMPMFLVYLWLPKAHVEAPVSGSMIL 219

>HMB1_TRIGR (P09080) Homeobox protein HB1 (TGHBOX1) (Fragment)|
          Length = 307

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 498 ASGLGKQRFRGRLTA--AGSSLYVHTTSTVSRDHLGRLFSPCK 376
           A+ LG   +RGR+ A  AG+   V   +  + +H  ++ SPCK
Sbjct: 126 AAELGDGSYRGRVNALAAGTGCLVSAAAEPNNNHCSQVMSPCK 168

>GUAC_LACAC (Q5FHY3) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate|
           oxidoreductase) (Guanosine monophosphate reductase)
          Length = 330

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495
           TG+ TGG  + A   C + AS+PL+A  G
Sbjct: 186 TGFGTGGWQLAALRMCSKVASKPLIADGG 214

>SOX3_MOUSE (P53784) Transcription factor SOX-3|
          Length = 375

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = -2

Query: 310 WPPAAYELN*ILMRQDGTSQSQHAPALSSPLPTDGLPLLHYY------YFPSLPTG 161
           W   AY L   +  Q G +Q    P++SSP P   LP +H Y      Y P +P G
Sbjct: 196 WANGAYSL---VQEQLGYAQP---PSMSSPPPPPALPQMHRYDMAGLQYSPMMPPG 245

>NU4M_ANOGA (P34852) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 447

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 106 LCAAFPTLPSTPMFVLYHWLPDLQIAXPCSSMLVL 2
           L   F  L   PMF+++ WLP   +  P S  ++L
Sbjct: 186 LSLVFAFLVKMPMFLVHLWLPKAHVEAPVSGSMIL 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,114,365
Number of Sequences: 219361
Number of extensions: 1831202
Number of successful extensions: 5251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5245
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)