ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16h24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRPV1_CANFA (Q697L1) Transient receptor potential cation channel... 30 4.8
2TRPV1_MOUSE (Q704Y3) Transient receptor potential cation channel... 30 4.8
3TRPV1_HUMAN (Q8NER1) Transient receptor potential cation channel... 30 4.8
4TRPV1_CAVPO (Q6R5A3) Transient receptor potential cation channel... 30 4.8
5TRPV1_RAT (O35433) Transient receptor potential cation channel s... 30 4.8
6TRPV1_RABIT (Q6RX08) Transient receptor potential cation channel... 30 4.8

>TRPV1_CANFA (Q697L1) Transient receptor potential cation channel subfamily V|
           member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1)
           (Vanilloid receptor 1)
          Length = 840

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 154 NSVIRIXCFTTAATXXSTDMILVEPCSQRLQCK 252
           NSV+ +  ++++ T    DM+LVEP ++ LQ K
Sbjct: 394 NSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDK 426



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>TRPV1_MOUSE (Q704Y3) Transient receptor potential cation channel subfamily V|
           member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1)
           (Vanilloid receptor 1)
          Length = 839

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 154 NSVIRIXCFTTAATXXSTDMILVEPCSQRLQCK 252
           NSV+ +  ++++ T    DM+LVEP ++ LQ K
Sbjct: 394 NSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDK 426



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>TRPV1_HUMAN (Q8NER1) Transient receptor potential cation channel subfamily V|
           member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1)
           (Vanilloid receptor 1) (Capsaicin receptor)
          Length = 839

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 154 NSVIRIXCFTTAATXXSTDMILVEPCSQRLQCK 252
           NSV+ +  ++++ T    DM+LVEP ++ LQ K
Sbjct: 394 NSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDK 426



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>TRPV1_CAVPO (Q6R5A3) Transient receptor potential cation channel subfamily V|
           member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1)
           (Vanilloid receptor 1)
          Length = 839

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 154 NSVIRIXCFTTAATXXSTDMILVEPCSQRLQCK 252
           NSV+ +  ++++ T    DM+LVEP ++ LQ K
Sbjct: 395 NSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDK 427



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>TRPV1_RAT (O35433) Transient receptor potential cation channel subfamily V|
           member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1)
           (Vanilloid receptor 1) (Vanilloid receptor type 1-like)
           (Capsaicin receptor)
          Length = 838

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 154 NSVIRIXCFTTAATXXSTDMILVEPCSQRLQCK 252
           NSV+ +  ++++ T    DM+LVEP ++ LQ K
Sbjct: 393 NSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDK 425



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>TRPV1_RABIT (Q6RX08) Transient receptor potential cation channel subfamily V|
           member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1)
           (Vanilloid receptor 1)
          Length = 842

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 154 NSVIRIXCFTTAATXXSTDMILVEPCSQRLQCK 252
           NSV+ +  ++++ T    DM+LVEP ++ LQ K
Sbjct: 396 NSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDK 428


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,295,410
Number of Sequences: 219361
Number of extensions: 1128145
Number of successful extensions: 2932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2932
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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