ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16h24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009335.1| Triticum aestivum clone wlm4.pk0009.a8:fis, full ... 190 3e-45
2ref|XM_506641.1| PREDICTED Oryza sativa (japonica cultivar-group... 60 7e-06
3ref|XM_450347.1| Oryza sativa (japonica cultivar-group), mRNA 60 7e-06
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
5dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
6dbj|AK104755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
7dbj|AK067978.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
8dbj|AK061499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
9emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, ... 52 0.002
10ref|XM_850579.1| PREDICTED: Canis familiaris similar to hematopo... 42 1.7
11ref|XM_543618.2| PREDICTED: Canis familiaris similar to hematopo... 42 1.7
12gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 40 6.8
13ref|XM_423393.1| PREDICTED: Gallus gallus similar to Transcripti... 40 6.8
14ref|XM_362521.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.8
15gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 6.8
16gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.8
17dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.8
18gb|AC024246.8| Homo sapiens BAC clone RP11-643O14 from 2, comple... 40 6.8
19gb|AE009591.1| Brucella melitensis 16M chromosome I, section 148... 40 6.8
20gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 6.8
21gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete seq... 40 6.8
22emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 6.8
23emb|CR354435.20| Zebrafish DNA sequence from clone CH211-113A14 ... 40 6.8 
>gb|BT009335.1| Triticum aestivum clone wlm4.pk0009.a8:fis, full insert mRNA sequence
          Length = 1660

 Score =  190 bits (96), Expect = 3e-45
 Identities = 240/281 (85%), Gaps = 21/281 (7%)
 Strand = Plus / Minus

                                                                        
Query: 38   ttccctgccatgagaagcatggaaacagtaacgcgcaaatggtacattacatccattagc 97
            |||||||||||||||||||||||||||||||| |||||||||||||     |||||||| 
Sbjct: 1471 ttccctgccatgagaagcatggaaacagtaactcgcaaatggtaca-----tccattaga 1417

                                                                        
Query: 98   agggttaatcatagctaaattactaccaccatcttacgacaacacgatacagactcaact 157
              ||||||||| | |||| |||||||||   |||| ||||| ||||||||||||||| ||
Sbjct: 1416 caggttaatcaaa-ctaa-ttactacca---tctt-cgacaccacgatacagactca-ct 1364

                                                                        
Query: 158  cggttattagaatcnnatgttttactactgctgctactanttnctctaccgacatgatcc 217
            ||||||||||||||  |||     ||||||||||||||   | |||||| || |||||||
Sbjct: 1363 cggttattagaatccgatg-----ctactgctgctact---tcctctactgatatgatcc 1312

                                                                        
Query: 218  tagtcgagccttgcagccagcggttacaatgcaagcaagaaccgccataaaccccagaga 277
            || |||||| ||||||||||||||||||| ||||||||||||||  ||||||||||||  
Sbjct: 1311 tactcgagctttgcagccagcggttacaacgcaagcaagaaccgttataaaccccagaat 1252

                                                     
Query: 278  aatcttctggcgtcaaataagatagcgataagcgattacct 318
            ||||||||||||||||||||||||   ||||||||||||||
Sbjct: 1251 aatcttctggcgtcaaataagata-aaataagcgattacct 1212



 Score =  188 bits (95), Expect = 1e-44
 Identities = 114/121 (94%)
 Strand = Plus / Minus

                                                                        
Query: 383  ccttcgatggtgatcctgttgaaggagcgggaaatgccgtcacctcccttgaggctgtgg 442
            |||||||||||||||||| |||||||||||||||||||||| || ||||||||| |||||
Sbjct: 1126 ccttcgatggtgatcctgctgaaggagcgggaaatgccgtcgccccccttgaggttgtgg 1067

                                                                        
Query: 443  agttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtnngcaccctc 502
            || |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 1066 agctccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggcaccctc 1007

             
Query: 503  a 503
            |
Sbjct: 1006 a 1006
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>ref|XM_506641.1| PREDICTED Oryza sativa (japonica cultivar-group), P0523B07.38-1 mRNA
          Length = 1718

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 438  tgtggagttccgactggatcgtctccatgatcttggcctcctccag 483
            ||||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct: 1214 tgtggagctccgattcgatcgtctccatgatcttggcctcttccag 1169
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>ref|XM_450347.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1718

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 438  tgtggagttccgactggatcgtctccatgatcttggcctcctccag 483
            ||||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct: 1214 tgtggagctccgattcgatcgtctccatgatcttggcctcttccag 1169
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                             
Query: 438     tgtggagttccgactggatcgtctccatgatcttggcctcctccag 483
               ||||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct: 4296000 tgtggagctccgattcgatcgtctccatgatcttggcctcttccag 4296045
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>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0523B07
          Length = 170510

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                            
Query: 438    tgtggagttccgactggatcgtctccatgatcttggcctcctccag 483
              ||||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct: 119759 tgtggagctccgattcgatcgtctccatgatcttggcctcttccag 119804
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>dbj|AK104755.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G03, full
            insert sequence
          Length = 1718

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 438  tgtggagttccgactggatcgtctccatgatcttggcctcctccag 483
            ||||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct: 1214 tgtggagctccgattcgatcgtctccatgatcttggcctcttccag 1169
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>dbj|AK067978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123M11, full
            insert sequence
          Length = 2332

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 438  tgtggagttccgactggatcgtctccatgatcttggcctcctccag 483
            ||||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct: 1708 tgtggagctccgattcgatcgtctccatgatcttggcctcttccag 1663
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>dbj|AK061499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D09, full
            insert sequence
          Length = 1718

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 438  tgtggagttccgactggatcgtctccatgatcttggcctcctccag 483
            ||||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct: 1214 tgtggagctccgattcgatcgtctccatgatcttggcctcttccag 1169
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>emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0505A02, complete
            sequence
          Length = 83989

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 454  gatcgtctccatgatcttggcctcctccag 483
            |||||||||||||||||||||||| |||||
Sbjct: 2688 gatcgtctccatgatcttggcctcttccag 2659
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>ref|XM_850579.1| PREDICTED: Canis familiaris similar to hematopoietic protein 1,
           transcript variant 2 (LOC486492), mRNA
          Length = 3714

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 92  attagcagggttaatcatagc 112
           |||||||||||||||||||||
Sbjct: 789 attagcagggttaatcatagc 769
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>ref|XM_543618.2| PREDICTED: Canis familiaris similar to hematopoietic protein 1,
           transcript variant 1 (LOC486492), mRNA
          Length = 3744

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 92  attagcagggttaatcatagc 112
           |||||||||||||||||||||
Sbjct: 789 attagcagggttaatcatagc 769
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    cgggccttcgatggtgatcc 398
              ||||||||||||||||||||
Sbjct: 377747 cgggccttcgatggtgatcc 377766
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>ref|XM_423393.1| PREDICTED: Gallus gallus similar to Transcription factor-like 1
           (LOC425660), mRNA
          Length = 1852

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 460 ctccatgatcttggcctcctccag 483
           |||| |||||||||||||||||||
Sbjct: 568 ctccgtgatcttggcctcctccag 545
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>ref|XM_362521.1| Magnaporthe grisea 70-15 hypothetical protein (MG08104.4) partial
            mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 468  tcttggcctcctccaggtcc 487
            ||||||||||||||||||||
Sbjct: 1021 tcttggcctcctccaggtcc 1002
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    gaaccgccataaaccccaga 275
              ||||||||||||||||||||
Sbjct: 152833 gaaccgccataaaccccaga 152852
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 325     gcggcgcgatctcgggcgct 344
               ||||||||||||||||||||
Sbjct: 2872645 gcggcgcgatctcgggcgct 2872664
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 459     tctccatgatcttggcctcctcca 482
               |||||||| |||||||||||||||
Sbjct: 1020484 tctccatggtcttggcctcctcca 1020507
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>gb|AC024246.8| Homo sapiens BAC clone RP11-643O14 from 2, complete sequence
          Length = 92320

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aaatggtacattacatccat 93
             ||||||||||||||||||||
Sbjct: 20223 aaatggtacattacatccat 20204
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>gb|AE009591.1| Brucella melitensis 16M chromosome I, section 148 of 195 of the
            complete sequence
          Length = 10362

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  cgggccttcgatggtgatcc 398
            ||||||||||||||||||||
Sbjct: 6109 cgggccttcgatggtgatcc 6090
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    cgggccttcgatggtgatcc 398
              ||||||||||||||||||||
Sbjct: 399502 cgggccttcgatggtgatcc 399521
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>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence
          Length = 1332022

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    gatagcgataagcgattacc 317
              ||||||||||||||||||||
Sbjct: 426630 gatagcgataagcgattacc 426649
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    cgggccttcgatggtgatcc 398
              ||||||||||||||||||||
Sbjct: 395869 cgggccttcgatggtgatcc 395888
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>emb|CR354435.20| Zebrafish DNA sequence from clone CH211-113A14 in linkage group 25,
              complete sequence
          Length = 167326

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    ttttactactgctgctacta 196
              ||||||||||||||||||||
Sbjct: 162001 ttttactactgctgctacta 161982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,179,161
Number of Sequences: 3902068
Number of extensions: 3179161
Number of successful extensions: 54856
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54691
Number of HSP's gapped (non-prelim): 163
length of query: 503
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 481
effective length of database: 17,147,199,772
effective search space: 8247803090332
effective search space used: 8247803090332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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