ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal6m22 |
|---|---|
| Clone Library Name | barley_pub |
>YJ85_YEAST (P47152) Hypothetical 19.0 kDa protein in NNF1-STE24 intergenic| region Length = 169 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Frame = -2 Query: 66 HTHTHTHQR-FIWKSLEVTIK 7 HTHTHTH +I+ +V+++ Sbjct: 21 HTHTHTHTHIYIYTGDQVSVR 41 Score = 23.5 bits (49), Expect(2) = 3.7 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 5/25 (20%) Frame = -1 Query: 106 FTNEMAAIVLLSR-----THTHTHT 47 FTN ++ S+ THTHTHT Sbjct: 2 FTNTRTILIYNSKVMNTHTHTHTHT 26
>UVRD_SALTY (Q05311) DNA helicase II (EC 3.6.1.-)| Length = 720 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 204 RPWPPLMIRWYIHSDKXGGLQ 266 + WPP WYI+S K GL+ Sbjct: 135 KQWPPRQAMWYINSQKDEGLR 155
>UVRD_ECOLI (P03018) DNA helicase II (EC 3.6.1.-)| Length = 720 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 204 RPWPPLMIRWYIHSDKXGGLQ 266 + WPP WYI+S K GL+ Sbjct: 135 KQWPPRQAMWYINSQKDEGLR 155
>CCDC3_MOUSE (Q9D6Y1) Coiled-coil domain-containing protein 3 precursor| Length = 273 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = -1 Query: 199 PLPVLLEALCVVRSPFHMYICX--KFWRSATISFTNEMAAIVLLSRT-HTHTHTPKIH 35 PLP+LL ALC+ SP C WR + E+A ++ ++ H P ++ Sbjct: 2 PLPLLLAALCLAASPAPARACQLPSEWRPLSEGCRAELAETIVYAKVLALHPEVPGLY 59
>MCH1_CANAL (Q59MJ2) Probable transporter MCH1| Length = 436 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = -3 Query: 227 DHQGRPWSYPFTCIARSPMCSS--FSIPYVHLYXILEI 120 DH+G S P TC S + + +PY H + +L++ Sbjct: 151 DHKGLAISLPITCYGLSALLGAQILKLPYFHRHDVLDL 188
>AGTR1_MELGA (P33396) Type-1 angiotensin II receptor (AT1)| Length = 359 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Frame = +3 Query: 39 IFG----VCVCVCVLLNKTIAAISLVNDMVADLQNXIQMYIW 152 IFG V V C + KT+A+I L+N +ADL I + +W Sbjct: 43 IFGNSLVVIVIYCYMKLKTVASIFLLNLALADLCFLITLPLW 84
>AGTR1_CHICK (P79785) Type-1 angiotensin II receptor (AT1)| Length = 359 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Frame = +3 Query: 39 IFG----VCVCVCVLLNKTIAAISLVNDMVADLQNXIQMYIW 152 IFG V V C + KT+A+I L+N +ADL I + +W Sbjct: 43 IFGNSLVVIVIYCYMKLKTVASIFLLNLALADLCFLITLPLW 84
>MGAT3_RAT (Q02527) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 538 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/50 (24%), Positives = 24/50 (48%) Frame = +3 Query: 45 GVCVCVCVLLNKTIAAISLVNDMVADLQNXIQMYIWNGERTTHRASSNTG 194 G+C+ + KT++ ++ ++ + N I + WN T +AS G Sbjct: 16 GLCLISFLHFFKTLSYVTFPRELASLSPNLISSFFWNNAPVTPQASPEPG 65
>MGAT3_MOUSE (Q10470) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 538 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/50 (24%), Positives = 24/50 (48%) Frame = +3 Query: 45 GVCVCVCVLLNKTIAAISLVNDMVADLQNXIQMYIWNGERTTHRASSNTG 194 G+C+ + KT++ ++ ++ + N I + WN T +AS G Sbjct: 16 GLCLISFLHFFKTLSYVTFPRELASLSPNLISSFFWNNAPVTPQASPEPG 65
>FBN1_PIG (Q9TV36) Fibrillin-1 precursor| Length = 2871 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -1 Query: 307 CCIPWSAF*SPMIYCKPPNLSECMYHRIIRGGHGRTPLPV 188 CC A+ +P C P N SE Y + GG G P P+ Sbjct: 1563 CCSLGKAWGTPCEQCPPVNTSE--YKILCPGGEGFRPNPI 1600
>FBN1_BOVIN (P98133) Fibrillin-1 precursor (MP340)| Length = 2871 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -1 Query: 307 CCIPWSAF*SPMIYCKPPNLSECMYHRIIRGGHGRTPLPV 188 CC A+ +P C P N SE Y + GG G P P+ Sbjct: 1563 CCSLGKAWGTPCELCPPVNTSE--YKILCPGGEGFRPNPI 1600
>XYLB_AMPSP (P54271) Xylulose kinase (EC 2.7.1.17) (Xylulokinase) (Fragment)| Length = 162 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = -1 Query: 226 IIRGGHGRTPLPVLLEALCVVRSPFHMYICXKFWRSAT 113 +++GGH TP P A S H Y +W AT Sbjct: 13 VVQGGHSATPRPATGPAGPAAHSGRHQYDPDAWWARAT 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,227,274 Number of Sequences: 219361 Number of extensions: 1249864 Number of successful extensions: 2748 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2664 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2739 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
