| Clone Name | rbaal6m22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009427.1| Triticum aestivum clone wlmk1.pk0030.f2:fis, full insert mRNA sequence Length = 1973 Score = 367 bits (185), Expect = 2e-98 Identities = 271/299 (90%), Gaps = 5/299 (1%) Strand = Plus / Minus Query: 77 caaaactatcgctgccatttcattggtaaatgatatggtggctgatctccaaaatttnat 136 ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| | || Sbjct: 1973 caaaactttcgctgtcatttcattggtaaatgatatggtggctgacctccaaaatatcat 1914 Query: 137 acagatgtacatatggaa---tggagaacgaactacacatagggcttcgagcaatacagg 193 ||||||||||| |||||| ||||||||| |||||||||| |||||| ||||||||||| Sbjct: 1913 acagatgtacagatggaactatggagaacgtactacacatacggcttccagcaatacagg 1854 Query: 194 taaaggggtacgaccatggcctcccctgatgatccgatggtacatacatt--cagataaa 251 ||||||| ||| |||||||||||||||| ||||| ||||||||| ||| |||||||| Sbjct: 1853 taaagggttacagccatggcctcccctgacgatccaatggtacatggattttcagataaa 1794 Query: 252 ttnggaggcttgcaatagatcatggggcttcagaaggcactccatggtatgcaacagatg 311 | |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 1793 cttggaggcttgcaatagatcatggggcttccgaaggcactccatggtatgcaacagacg 1734 Query: 312 agtggtccgaagtggatggaacagcgttgtactgaccatatccagnatatacccccaca 370 ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 1733 agtggtccgaagtagatggaacagcgttgtactgaccatatccagcatatactcccaca 1675
>gb|AY108254.1| Zea mays PCO078069 mRNA sequence Length = 1295 Score = 44.1 bits (22), Expect = 0.32 Identities = 70/86 (81%) Strand = Plus / Minus Query: 266 atagatcatggggcttcagaaggcactccatggtatgcaacagatgagtggtccgaagtg 325 |||| ||||| |||||||||||| | |||||||| ||| || ||||| || || || Sbjct: 972 atagctcatgcggcttcagaaggaatgccatggtaaccaatagtagagtgttctgagctg 913 Query: 326 gatggaacagcgttgtactgaccata 351 || |||||||| |||||||||||||| Sbjct: 912 gaaggaacagcattgtactgaccata 887
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6 through 10 and partial cds Length = 688489 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 agctttaatcgtgacttccaagctt 28 ||||||||| ||||||||||||||| Sbjct: 257974 agctttaatggtgacttccaagctt 257950
>gb|AC102431.7| Mus musculus chromosome 14, clone RP24-106J1, complete sequence Length = 157923 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 agctttaatcgtgacttccaagctt 28 ||||||||| ||||||||||||||| Sbjct: 53051 agctttaatggtgacttccaagctt 53075
>dbj|AK125860.1| Homo sapiens cDNA FLJ43872 fis, clone TESTI4008417 Length = 4078 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 109 atatggtggctgatctccaaaattt 133 ||||||| ||||||||||||||||| Sbjct: 579 atatggtagctgatctccaaaattt 555
>gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, complete sequence Length = 174888 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 atatggtggctgatctccaaaattt 133 ||||||| ||||||||||||||||| Sbjct: 65144 atatggtagctgatctccaaaattt 65168
>gb|AC009257.3|AC009257 Drosophila melanogaster, chromosome 2R, region 59D-59E, BAC clone BACR25I01, complete sequence Length = 218565 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 acaaaactatcgctgccatt 95 |||||||||||||||||||| Sbjct: 76644 acaaaactatcgctgccatt 76625
>gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68 of 73 of the complete sequence Length = 299331 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 acaaaactatcgctgccatt 95 |||||||||||||||||||| Sbjct: 264761 acaaaactatcgctgccatt 264742 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,415,867 Number of Sequences: 3902068 Number of extensions: 2415867 Number of successful extensions: 43508 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43485 Number of HSP's gapped (non-prelim): 20 length of query: 370 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 348 effective length of database: 17,147,199,772 effective search space: 5967225520656 effective search space used: 5967225520656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)