ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16h23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 8e-31
2gb|AY104267.1| Zea mays PCO085704 mRNA sequence 98 4e-17
3gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 64 6e-07
4gb|AY023245.1| Oryza sativa microsatellite MRG5570 containing (G... 50 0.009
5gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, comp... 44 0.54
6emb|AL662892.11| Mouse DNA sequence from clone RP23-408L15 on ch... 44 0.54
7gb|AC132331.3| Mus musculus BAC clone RP24-217D10 from chromosom... 42 2.1
8gb|AC124556.4| Mus musculus BAC clone RP23-246K11 from chromosom... 42 2.1
9gb|AC073591.17| Homo sapiens 12 BAC RP1-97G4 (Roswell Park Cance... 42 2.1
10gb|AC068800.28|AC068800 Homo sapiens 12 BAC RP11-557L8 (Roswell ... 42 2.1
11emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chro... 42 2.1
12emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chr... 42 2.1
13emb|AL662893.12| Mouse DNA sequence from clone RP23-202G21 on ch... 42 2.1
14emb|AL591884.11| Mouse DNA sequence from clone RP23-183N8 on chr... 42 2.1
15gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 8.4
16ref|XM_381375.1| Gibberella zeae PH-1 chromosome 1 conserved hyp... 40 8.4
17emb|CR727815.2|CNS0GOJ1 Tetraodon nigroviridis full-length cDNA 40 8.4
18gb|AF036705.2| Caenorhabditis elegans cosmid F37C4, complete seq... 40 8.4
19gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosom... 40 8.4
20emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on ch... 40 8.4
21emb|AL162413.26| Human DNA sequence from clone RP11-109M17 on ch... 40 8.4
22emb|AL162377.10| Human DNA sequence from clone RP11-327P2 on chr... 40 8.4
23emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 8.4
24gb|AC156039.4| Mus musculus BAC clone RP23-24C2 from chromosome ... 40 8.4
25gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome ... 40 8.4
26emb|AL929295.7| Zebrafish DNA sequence from clone BUSM1-71B9 in ... 40 8.4
27emb|AL929461.3| Zebrafish DNA sequence from clone BUSM1-180O5 in... 40 8.4
28emb|BX897737.7| Zebrafish DNA sequence from clone CH211-200J6 in... 40 8.4
29emb|BX510997.9| Zebrafish DNA sequence from clone CH211-253F2 in... 40 8.4
30tpg|BK005224.1| TPA: TPA_inf: Gibberella zeae glutamine:fructose... 40 8.4
31gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete... 40 8.4
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
33gb|AC019052.7| Homo sapiens BAC clone RP11-96E16 from 2, complet... 40 8.4
34dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
35emb|BX322631.8| Zebrafish DNA sequence from clone DKEY-173L11, c... 40 8.4
36dbj|AK107318.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
37gb|AC133944.4| Mus musculus BAC clone RP24-113L10 from 10, compl... 40 8.4
38gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complet... 40 8.4
39emb|CR407545.9| Zebrafish DNA sequence from clone CH211-197E20 i... 40 8.4 
>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full
           insert sequence
          Length = 1415

 Score =  143 bits (72), Expect = 8e-31
 Identities = 120/136 (88%)
 Strand = Plus / Minus

                                                                       
Query: 485 atgtcataggcgctcgaaccttctccttgatttacgcccttcatgagctcctggagctcc 544
           ||||||||||| ||||||||||||||||| ||||| || ||||| |||||||| ||||||
Sbjct: 317 atgtcataggcactcgaaccttctccttggtttacacctttcataagctcctgaagctcc 258

                                                                       
Query: 545 gccaatacatccgacaggcggccattccgaagcacgatcgaccccgtcaggcctgcgccg 604
           ||||| || || || || ||||||||||| ||||||||||| | |||||  |||||||||
Sbjct: 257 gccaacacgtcagatagccggccattccgcagcacgatcgagctcgtcaaccctgcgccg 198

                           
Query: 605 acgaggatgaggacct 620
           ||||||||||||||||
Sbjct: 197 acgaggatgaggacct 182



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 101/127 (79%)
 Strand = Plus / Minus

                                                                       
Query: 349 ttggagtcgagtgcctttacctccttggtgctctccagaaacaattcgagacccttcacc 408
           |||||||||| |||||||   |||||  ||||||||||||   |||| || |||||||| 
Sbjct: 983 ttggagtcgattgccttttgttcctttctgctctccagaacagattcaagccccttcact 924

                                                                       
Query: 409 ggcttcttttcagtttgagccaggtccaagagcttgagtttttcatccgcttcttggaaa 468
           | |||  ||||||  |||||||  ||   |||||||||||||||||  ||||| || |||
Sbjct: 923 gcctttctttcagactgagccaactctgtgagcttgagtttttcattagcttcctgaaaa 864

                  
Query: 469 aacttgg 475
           |||||||
Sbjct: 863 aacttgg 857
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>gb|AY104267.1| Zea mays PCO085704 mRNA sequence
          Length = 1009

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 97/113 (85%)
 Strand = Plus / Minus

                                                                       
Query: 508 tccttgatttacgcccttcatgagctcctggagctccgccaatacatccgacaggcggcc 567
           |||||||||||| |||||||| | ||||||||| ||  |||| ||||| || | ||||||
Sbjct: 281 tccttgatttacacccttcataatctcctggagttctcccaacacatcagataagcggcc 222

                                                                
Query: 568 attccgaagcacgatcgaccccgtcaggcctgcgccgacgaggatgaggacct 620
           |||||| |||| |||||| |||||||  ||||| |||||||||||||||||||
Sbjct: 221 attccgcagcaggatcgagcccgtcatccctgcaccgacgaggatgaggacct 169
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>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0087J09, complete sequence
          Length = 153351

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 485   atgtcataggcgctcgaaccttctccttgatttacgcccttcatgagctcct 536
             ||||||||||| ||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 51181 atgtcataggcactcgaaccttctccttggtttacacctttcataagctcct 51130



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 596   cctgcgccgacgaggatgaggacct 620
             |||||||||||||||||||||||||
Sbjct: 50519 cctgcgccgacgaggatgaggacct 50495



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 534   cctggagctccgccaatacatccgacaggcggccattccgaagcacgatcga 585
             |||| ||||||||||| || || || || ||||||||||| |||||||||||
Sbjct: 50724 cctgaagctccgccaacacgtcagatagccggccattccgcagcacgatcga 50673
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>gb|AY023245.1| Oryza sativa microsatellite MRG5570 containing (GGA)X8, closest to
           marker C67A, genomic sequence
          Length = 224

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 596 cctgcgccgacgaggatgaggacct 620
           |||||||||||||||||||||||||
Sbjct: 147 cctgcgccgacgaggatgaggacct 171
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>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence
          Length = 230236

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 345    aggcttggagtcgagtgcctttacct 370
              |||||||||||| |||||||||||||
Sbjct: 193694 aggcttggagtcaagtgcctttacct 193669
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>emb|AL662892.11| Mouse DNA sequence from clone RP23-408L15 on chromosome 11 Contains
            part of a novel gene, a novel gene, a SMT3 (supressor of
            mif two, 3) homolog 1 (S. cerevisiae) (Smt3h1) pseudogene
            and a ribosomal protein S12 (Rps12) pseudogene, complete
            sequence
          Length = 106145

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 345  aggcttggagtcgagtgcctttacct 370
            |||||||||||| |||||||||||||
Sbjct: 4106 aggcttggagtcaagtgcctttacct 4131
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>gb|AC132331.3| Mus musculus BAC clone RP24-217D10 from chromosome 12, complete
             sequence
          Length = 176940

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 345   aggcttggagtcgagtgcctttacc 369
             |||||||||||| ||||||||||||
Sbjct: 14768 aggcttggagtcaagtgcctttacc 14744
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>gb|AC124556.4| Mus musculus BAC clone RP23-246K11 from chromosome 12, complete sequence
          Length = 202214

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 345    aggcttggagtcgagtgcctttacc 369
              |||||||||||| ||||||||||||
Sbjct: 163626 aggcttggagtcaagtgcctttacc 163602
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>gb|AC073591.17| Homo sapiens 12 BAC RP1-97G4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 108030

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    gactccaaaaatacaaagaaa 91
             |||||||||||||||||||||
Sbjct: 17163 gactccaaaaatacaaagaaa 17143
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>gb|AC068800.28|AC068800 Homo sapiens 12 BAC RP11-557L8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 89183

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    gactccaaaaatacaaagaaa 91
             |||||||||||||||||||||
Sbjct: 88101 gactccaaaaatacaaagaaa 88081
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>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete
             sequence
          Length = 97756

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 77    aaaaatacaaagaaacgaatacata 101
             |||||||||||||||| ||||||||
Sbjct: 55914 aaaaatacaaagaaacaaatacata 55938
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>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete
              sequence
          Length = 223547

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 345    aggcttggagtcgagtgcctttacc 369
              |||||||||||| ||||||||||||
Sbjct: 201302 aggcttggagtcaagtgcctttacc 201278
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>emb|AL662893.12| Mouse DNA sequence from clone RP23-202G21 on chromosome 11, complete
              sequence
          Length = 205405

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 73     ctccaaaaatacaaagaaacgaata 97
              |||||||| ||||||||||||||||
Sbjct: 123960 ctccaaaactacaaagaaacgaata 123984
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>emb|AL591884.11| Mouse DNA sequence from clone RP23-183N8 on chromosome 2, complete
             sequence
          Length = 204495

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 345   aggcttggagtcgagtgcctttacc 369
             |||||||||| ||||||||||||||
Sbjct: 61439 aggcttggaggcgagtgcctttacc 61463
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 587     cccgtcaggcctgcgccgac 606
               ||||||||||||||||||||
Sbjct: 3333847 cccgtcaggcctgcgccgac 3333828
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>ref|XM_381375.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein
           (FG01199.1) partial mRNA
          Length = 2070

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 520 gcccttcatgagctcctggagctc 543
           ||||||||||| ||||||||||||
Sbjct: 981 gcccttcatgatctcctggagctc 958
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>emb|CR727815.2|CNS0GOJ1 Tetraodon nigroviridis full-length cDNA
          Length = 1170

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 301 aacgttttcgtcggtttctt 320
           ||||||||||||||||||||
Sbjct: 364 aacgttttcgtcggtttctt 345
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>gb|AF036705.2| Caenorhabditis elegans cosmid F37C4, complete sequence
          Length = 28606

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    aaaacgtgttttaattattt 21
            ||||||||||||||||||||
Sbjct: 7509 aaaacgtgttttaattattt 7528
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>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence
          Length = 228750

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   caaacaaagcaagcaagaatgcaa 191
             ||||||||||||||||||| ||||
Sbjct: 70874 caaacaaagcaagcaagaaagcaa 70897
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>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the
             gene for calcium/calmodulin-dependent protein kinase II
             (CaMKIINalpha), the gene for a novel protein (FLJ12875), a
              ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA
             gene for cytidine deaminase, the PINK1 gene for PTEN
             induced putative kinase 1, a novel gene (FLJ00387), the
             DDOST gene for dolichyl-diphosphooligosaccharide-protein
             glycosyltransferase and the 3' end of the KIF17 gene for
             kinesin family member 17, complete sequence
          Length = 195076

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 164   ctatcaaacaaagcaagcaagaatgcaa 191
             |||||||| |||||||||||||| ||||
Sbjct: 95829 ctatcaaagaaagcaagcaagaaagcaa 95856
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>emb|AL162413.26| Human DNA sequence from clone RP11-109M17 on chromosome 9 Containe the
             5' end of a pseudogene similar to part of A kinase (PRKA)
             anchor protein 8 (AKAP8), complete sequence
          Length = 114302

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    actccaaaaatacaaagaaa 91
             ||||||||||||||||||||
Sbjct: 36564 actccaaaaatacaaagaaa 36545
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>emb|AL162377.10| Human DNA sequence from clone RP11-327P2 on chromosome 13 Contains 3
             novel genes, a meningioma-expressed antigen 6/11 (MEA6)
             (MEA11) pseudogene and the 3' end of the ATP7B gene for
             ATPase, Cu++ transporting, beta polypeptide (Wilson
             disease), complete sequence
          Length = 169104

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   cagcacgaggccttctttac 247
             ||||||||||||||||||||
Sbjct: 60624 cagcacgaggccttctttac 60643
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     ttcttctatattttcctatc 168
               ||||||||||||||||||||
Sbjct: 1988686 ttcttctatattttcctatc 1988667
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>gb|AC156039.4| Mus musculus BAC clone RP23-24C2 from chromosome 10, complete sequence
          Length = 206634

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    acaaagcaagcaagaatgca 190
              ||||||||||||||||||||
Sbjct: 196494 acaaagcaagcaagaatgca 196513
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>gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome 1, complete sequence
          Length = 200598

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      tgttttaattatttattcct 27
              ||||||||||||||||||||
Sbjct: 119549 tgttttaattatttattcct 119568
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>emb|AL929295.7| Zebrafish DNA sequence from clone BUSM1-71B9 in linkage group 7
            Contains three novel genes similar to cdh1 (epithelial
            cadherin 1), complete sequence
          Length = 99338

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 366  tacctccttggtgctctccagaaa 389
            ||||||||||| ||||||||||||
Sbjct: 2150 tacctccttggcgctctccagaaa 2127
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>emb|AL929461.3| Zebrafish DNA sequence from clone BUSM1-180O5 in linkage group 7
             Contains two novel genes similar to cdh1 (E-cadherin) and
             a novel gene for a DNA polymerase, complete sequence
          Length = 58622

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 366   tacctccttggtgctctccagaaa 389
             ||||||||||| ||||||||||||
Sbjct: 16745 tacctccttggcgctctccagaaa 16722
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>emb|BX897737.7| Zebrafish DNA sequence from clone CH211-200J6 in linkage group 7,
             complete sequence
          Length = 64259

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 366   tacctccttggtgctctccagaaa 389
             ||||||||||| ||||||||||||
Sbjct: 26266 tacctccttggcgctctccagaaa 26243
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>emb|BX510997.9| Zebrafish DNA sequence from clone CH211-253F2 in linkage group 25,
             complete sequence
          Length = 104617

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 12    ttaattatttattccttnacttgttta 38
             ||||||||||||||||| |||| ||||
Sbjct: 32787 ttaattatttattccttcacttcttta 32813
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>tpg|BK005224.1| TPA: TPA_inf: Gibberella zeae glutamine:fructose-6-phosphate
            amidotransferase gene, complete cds
          Length = 2637

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 520  gcccttcatgagctcctggagctc 543
            ||||||||||| ||||||||||||
Sbjct: 1548 gcccttcatgatctcctggagctc 1525
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>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence
          Length = 150214

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     aaatgactccaaaaatacaa 86
              ||||||||||||||||||||
Sbjct: 135619 aaatgactccaaaaatacaa 135600
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 77       aaaaatacaaagaaacgaatacat 100
                ||||||||||| ||||||||||||
Sbjct: 13691862 aaaaatacaaataaacgaatacat 13691885
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>gb|AC019052.7| Homo sapiens BAC clone RP11-96E16 from 2, complete sequence
          Length = 117955

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    aatacaaagaaacgaataca 99
             ||||||||||||||||||||
Sbjct: 61420 aatacaaagaaacgaataca 61439
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>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0409D09
          Length = 150485

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    aaaaatacaaagaaacgaatacat 100
             ||||||||||| ||||||||||||
Sbjct: 42854 aaaaatacaaataaacgaatacat 42877
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>emb|BX322631.8| Zebrafish DNA sequence from clone DKEY-173L11, complete sequence
          Length = 161710

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 366    tacctccttggtgctctccagaaa 389
              ||||||||||| ||||||||||||
Sbjct: 120618 tacctccttggcgctctccagaaa 120641
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>dbj|AK107318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-E03, full
            insert sequence
          Length = 2605

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 520  gcccttcatgagctcctggagctc 543
            ||||||||||| ||||||||||||
Sbjct: 1279 gcccttcatgatctcctggagctc 1256
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>gb|AC133944.4| Mus musculus BAC clone RP24-113L10 from 10, complete sequence
          Length = 167418

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   acaaagcaagcaagaatgca 190
             ||||||||||||||||||||
Sbjct: 52586 acaaagcaagcaagaatgca 52567
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>gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complete sequence
          Length = 200104

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tgttttaattatttattcct 27
             ||||||||||||||||||||
Sbjct: 74550 tgttttaattatttattcct 74569
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>emb|CR407545.9| Zebrafish DNA sequence from clone CH211-197E20 in linkage group 25,
             complete sequence
          Length = 103187

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 12    ttaattatttattccttnacttgttta 38
             ||||||||||||||||| |||| ||||
Sbjct: 62910 ttaattatttattccttcacttcttta 62884


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,354,690
Number of Sequences: 3902068
Number of extensions: 6354690
Number of successful extensions: 128057
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127878
Number of HSP's gapped (non-prelim): 178
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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