ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal16h16 |
|---|---|
| Clone Library Name | barley_pub |
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 42.7 bits (99), Expect = 0.001 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -2 Query: 273 KESGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 ++ G+R+ C C+ GH+S+ CP+ KKER+ C C PGH C Sbjct: 364 QDRGERNNNCFNCQQPGHRSNDCPEP----KKEREPRVCYNCQQPGHNSRDC 411 Score = 42.7 bits (99), Expect = 0.001 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -2 Query: 273 KESGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 ++ G+R+ C C+ GH+S+ CP+ KKER+ C C PGH C Sbjct: 250 QDRGERNNNCFNCQQPGHRSNDCPEP----KKEREPRVCYNCQQPGHNSRDC 297 Score = 37.7 bits (86), Expect = 0.033 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = -2 Query: 246 CSICRGKGHKSSTCPD--RGDTLKKERKIATCGRCGVPGHRRTTCSKP 109 C C+G+GH+S+ CP+ RG C CG GHR C P Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----------CFNCGEQGHRSNECPNP 491
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = -2 Query: 264 GKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSK 112 G+R+ C C+ GH+SS CP+ +KER+ C C PGH C++ Sbjct: 154 GERNNNCFNCQQPGHRSSDCPEP----RKEREPRVCYNCQQPGHTSRECTE 200 Score = 37.7 bits (86), Expect = 0.033 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = -2 Query: 246 CSICRGKGHKSSTCPD--RGDTLKKERKIATCGRCGVPGHRRTTCSKP 109 C C+G+GH+S+ CP+ RG C CG GHR C P Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----------CFNCGEQGHRSNECPNP 280
>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I| Length = 218 Score = 39.7 bits (91), Expect = 0.009 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = -2 Query: 258 RSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSK 112 R +FC CR +GH CP+ D ++ C RCG H CSK Sbjct: 75 RDKFCFACRQQGHIVQDCPEAKD------NVSICFRCGSKEHSLNACSK 117
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 39.7 bits (91), Expect = 0.009 Identities = 20/50 (40%), Positives = 22/50 (44%) Frame = -2 Query: 267 SGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 SG R C C GH S CP G T +R C +CG PGH C Sbjct: 191 SGAGDRKCYKCGESGHMSRECPSAGSTGSGDR---ACYKCGKPGHISREC 237 Score = 37.0 bits (84), Expect = 0.056 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Frame = -2 Query: 276 EKESGKRSRF-----CSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSK 112 E E KR R C C +GH + CP+ K + + TC RCG GH C Sbjct: 3 ETEDVKRPRTESSTSCRNCGKEGHYARECPEADS--KGDERSTTCFRCGEEGHMSRECPN 60 Query: 111 PLLSMMAG 88 S AG Sbjct: 61 EARSGAAG 68 Score = 35.4 bits (80), Expect = 0.16 Identities = 38/142 (26%), Positives = 51/142 (35%), Gaps = 6/142 (4%) Frame = -2 Query: 525 GKSGCSMRSVKGNRS--KSKDAVSVSVHPPVSQASEGSCANGASYNSDYSEAGSRLMMNG 352 G+SG + G+R+ K DA +S P Q + Y + SR NG Sbjct: 128 GRSG-AQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNG 186 Query: 351 EQDLLAPERNK--KHGWPTTSRDKDPYEKESGKRSRFCSICRGKGHKSSTCPDRGDTLKK 178 + K K G + P +G R C C GH S CP+ G + Sbjct: 187 QGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGG 246 Query: 177 ER--KIATCGRCGVPGHRRTTC 118 R TC +CG GH C Sbjct: 247 SRGGGDRTCYKCGEAGHISRDC 268 Score = 34.7 bits (78), Expect = 0.28 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = -2 Query: 297 SRDKDPYEKESGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 +R+ + + +RS C C +GH S CP+ + TC RCG GH C Sbjct: 28 ARECPEADSKGDERSTTCFRCGEEGHMSRECPN--EARSGAAGAMTCFRCGEAGHMSRDC 85
>2A5D_YEAST (P38903) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit delta isoform (PP2A, B subunit, B' delta isoform) (Protein RTS1) (Protein SCS1) Length = 757 Score = 36.6 bits (83), Expect = 0.073 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Frame = -2 Query: 519 SGCSMRSVKGNRSKSKDAVSVSVHPPVSQASEGSCANGASYNSDYSEAGSRLMMNGEQDL 340 S S S K ++ K K+ S + AS S ++G +++S S G+Q Sbjct: 16 SSSSSSSKKKDKEKEKEKSSTTSSTSKKPASASSSSHGTTHSSASSTGSKSTTEKGKQSG 75 Query: 339 LAPERNKKHGWPTTSRDKDPYEKESGKRSRFCSICR-GKGHKSSTCPDRGDTLKKE 175 P + K H T+ S SR S+ R G T +G K+ Sbjct: 76 SVPSQGKHHSSSTSKTKTATTPSSSSSSSRSSSVSRSGSSSTKKTSSRKGQEQSKQ 131
>ZKSC1_PONPY (Q5R670) Zinc finger with KRAB and SCAN domain-containing protein 1| Length = 563 Score = 35.4 bits (80), Expect = 0.16 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 8/122 (6%) Frame = -2 Query: 489 NRSKSKDAVSVSVHPPVSQASEGSCANGAS---YNSDYSEAGSRLMMNGEQDLLAPE--- 328 NR++++++ S + + +E S ++G + + ++ E + GE+ PE Sbjct: 270 NRNENEESTSKA------ETAEDSASHGETAGRFQKEFGEKRDQEGKTGERQQKNPEEKT 323 Query: 327 -RNKKHGWPTTSRDKDPYEKESGKRSRFCSICRGKGHKSS-TCPDRGDTLKKERKIATCG 154 + K+ P T +DK E G R + + R S+ T P+ T K + CG Sbjct: 324 GKEKRDSGPATGKDKKTITGERGPREKGKGLGRSFSLSSNFTTPEEVPTGTKSHRCDECG 383 Query: 153 RC 148 +C Sbjct: 384 KC 385
>ZO71_XENLA (P18751) Oocyte zinc finger protein XLCOF7.1 (Fragment)| Length = 898 Score = 33.5 bits (75), Expect = 0.62 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = -2 Query: 324 NKKHGWPTTSRDKDPYEKESGKRSRF-CSICRGKGHKSSTCPDRGDTLKKERKIATCGRC 148 N+ H + RD ++ + F CS C GK + CPDR T KK + CG+C Sbjct: 292 NECHEYLIHKRDFGKHQMTHKREKSFSCSEC-GKCFLNQLCPDRHQTGKKPFSCSKCGKC 350
>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC| 2.7.11.1) (Transcription initiation factor TFIID 230 kDa subunit) (TAFII-230) (TAFII250) (TBP-associated factor 230 kDa) (p230) Length = 2129 Score = 32.7 bits (73), Expect = 1.1 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Frame = -2 Query: 369 RLMMNGEQDLLAP----ERNKKHGWPTTSRDKDPYEKESGKRSRFCSICRGKGHKSSTCP 202 R+ N E++ LA ++ + G PT+ D S K R G+K + Sbjct: 1282 RIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKE-------RDSGYKEVSPS 1334 Query: 201 DRGDTLKKERKIATCGRCGVPGHRRTTCSKPLLSMM 94 + LK + K+ CG CG GH RT + PL S M Sbjct: 1335 RKKFKLKPDLKLK-CGACGQVGHMRTNKACPLYSGM 1369
>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7| Length = 542 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = -2 Query: 267 SGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSKPL 106 S ++ C C +GH S CP RK+ C C GH +C PL Sbjct: 235 SANKNIICRNCDKRGHLSKNCP-------LPRKVRRCFLCSRRGHLLYSCPAPL 281
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -2 Query: 246 CSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSK 112 C C GH S CP+ T + + +C +CG P H C K Sbjct: 67 CFNCNQTGHISRECPEPKKTSRFSK--VSCYKCGGPNHMAKDCMK 109 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -2 Query: 252 RFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCS 115 R C C GH + C T+ + + C CG GH R+ C+ Sbjct: 23 RLCYNCNKPGHVQTDC-----TMPRTVEFKQCYNCGETGHVRSECT 63
>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 510 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -2 Query: 273 KESGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 ++ G+R+ C C +GH + C K + C +CG PGH+ C Sbjct: 384 QQQGRRTVKCWNCGKEGHTAKQC--------KAPRRQGCWKCGKPGHQMAKC 427
>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1A) Length = 1707 Score = 32.3 bits (72), Expect = 1.4 Identities = 27/106 (25%), Positives = 42/106 (39%) Frame = -2 Query: 570 QQVSNNGVSGANLLDGKSGCSMRSVKGNRSKSKDAVSVSVHPPVSQASEGSCANGASYNS 391 Q V G + + G SG + + + R S D + P + G+ NG + Sbjct: 191 QTVPTGGKALSEKFQG-SGAATETAESRRRSSSDTAAY----PAGTTAVGTPGNGTPCSQ 245 Query: 390 DYSEAGSRLMMNGEQDLLAPERNKKHGWPTTSRDKDPYEKESGKRS 253 D S + SR P+ ++ G P TSR PY ++S S Sbjct: 246 DTSFSSSRQDTPSSFGQFTPQSSQ--GTPYTSRGSTPYSQDSAYSS 289
>PPRB_HUMAN (Q15648) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) (p53 regulator Length = 1581 Score = 32.3 bits (72), Expect = 1.4 Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 15/160 (9%) Frame = -2 Query: 546 SGANLLDGKSGCSMRSVKGNRSKSKDAVSVSVHPPVSQASEGSCANGASYNSDYSEAGSR 367 SG + + G S S G +S S S S+ +S A+ +S++S S S Sbjct: 1229 SGGSHMSGTSSSS-----GMKSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSS 1283 Query: 366 LMMNGEQDLLAPERNK-----------KHGWPTTS-RDKDPYEKESGKRSRFCSICRGKG 223 +G +P RNK KHG T+ +DP + + G + S Sbjct: 1284 QNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPLDGQMGVSTNSSSHPMSSK 1343 Query: 222 HKSSTCPDRGDTLKKER---KIATCGRCGVPGHRRTTCSK 112 H S +G K ++ K++T G V ++T+ SK Sbjct: 1344 HNMSGGEFQGKREKSDKDKSKVSTSG-SSVDSSKKTSESK 1382
>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) Length = 1575 Score = 32.3 bits (72), Expect = 1.4 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 12/128 (9%) Frame = -2 Query: 558 NNGVSGANLLDGKSGCSMRSVKGNRSKSKDAVSVSVHPPVSQASEGSCANGASYNSDYSE 379 ++G SG+++ SG S S G +S S A S SV AS + +S++S S Sbjct: 1228 SSGSSGSHV----SGTSSSS--GMKSSSGSASSGSVSQKTPPASNSCTPSSSSFSSSGSS 1281 Query: 378 AGSRLMMNGEQDLLAPERNK-----------KHGWPTTS-RDKDPYEKESGKRSRFCSIC 235 S +G +P RNK KHG T+ +DP + + G + + Sbjct: 1282 MSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPIDSQMGASTNSSNHP 1341 Query: 234 RGKGHKSS 211 H +S Sbjct: 1342 MSSKHNTS 1349
>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 32.0 bits (71), Expect = 1.8 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 234 RGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 +G G C G ++ R++ C +CG PGH C Sbjct: 371 KGSGPVCFNCKKPGHLARQCREVKKCNKCGKPGHLAAKC 409
>TOP3A_MOUSE (O70157) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase| III alpha) Length = 1003 Score = 32.0 bits (71), Expect = 1.8 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = -2 Query: 201 DRGDTLKKERKIATCGRCGVPGHRRTTC 118 D G T+KK RK C C PGH RT C Sbjct: 975 DAGSTVKKPRK---CSLCHQPGHTRTFC 999
>TNR21_MOUSE (Q9EPU5) Tumor necrosis factor receptor superfamily member 21| precursor (TNFR-related death receptor 6) (Death receptor 6) Length = 655 Score = 32.0 bits (71), Expect = 1.8 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = -3 Query: 620 PGVSRSVLQKTGSVLLSSKCPTMEYLGRTCSMASLVV 510 PG R V + TG VL KCP Y+ C+ SL V Sbjct: 51 PGTYRHVDRTTGQVLTCDKCPAGTYVSEHCTNMSLRV 87
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/62 (25%), Positives = 22/62 (35%) Frame = -2 Query: 297 SRDKDPYEKESGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 +R++D G+ C C GH + CP + K C C GH C Sbjct: 492 NRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKK---RKSGNSRERCQLCNGMGHNAKQC 548 Query: 117 SK 112 K Sbjct: 549 RK 550 Score = 29.6 bits (65), Expect = 9.0 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = -2 Query: 312 GWPTTSRDKDPYEKESGKRSRFCSICRGKGHKSSTCPDR 196 G P + + P +++SG C +C G GH + C R Sbjct: 513 GSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKR 551
>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable| element R1DM (ORF 1) Length = 471 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/51 (31%), Positives = 21/51 (41%) Frame = -2 Query: 258 RSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSKPL 106 R+ C C G HK S C +K + C +CG GH C P+ Sbjct: 395 RTYACHRCVGFDHKVSEC---------RQKESVCRQCGQQGHTAAKCQNPV 436
>DHOM_CORGL (P08499) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 445 Score = 31.2 bits (69), Expect = 3.1 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 14/76 (18%) Frame = -2 Query: 495 KGNRSKSKDAVSVSVHPPVSQASEGSCANGASYNSDY--SEAGSRLMMNGE--------- 349 K + K A+S VHP + S + S+N+ + +EA RLM G Sbjct: 268 KFTNKEGKSAISARVHPTLLPVSHPLASVNKSFNAIFVEAEAAGRLMFYGNGAGGAPTAS 327 Query: 348 ---QDLLAPERNKKHG 310 D++ RNK HG Sbjct: 328 AVLGDVVGAARNKVHG 343
>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 31.2 bits (69), Expect = 3.1 Identities = 12/39 (30%), Positives = 17/39 (43%) Frame = -2 Query: 234 RGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 +G G C G ++ R + C +CG PGH C Sbjct: 371 KGSGPVCFNCKKPGHLARQCRDVKKCNKCGKPGHLAAKC 409
>BOC_MOUSE (Q6AZB0) Brother of CDO precursor (Protein BOC)| Length = 1110 Score = 31.2 bits (69), Expect = 3.1 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = -1 Query: 232 GQGAQIKHMP*SR*HPEKREEDC-YLRK--VWCARAPEDNVQQAPPLDDGWCPLYTLGSR 62 G GA + +P H + +DC +L+K V + ++P L+ W P Y G R Sbjct: 992 GVGAFLYTLPDDSTHQLLQPQDCCHLQKQPVTTCQTAVRRTSESPGLESSWDPPYHSGPR 1051 Query: 61 CC 56 CC Sbjct: 1052 CC 1053
>ADCY1_HUMAN (Q08828) Adenylate cyclase type 1 (EC 4.6.1.1) (Adenylate cyclase| type I) (ATP pyrophosphate-lyase 1) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1119 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 189 TLKKERKIATCGRCGVPGHRRTTCSKPLLSMMAGVP 82 +L +RK+ GR G+ G R C P +S+ AG+P Sbjct: 1067 SLGLDRKMCPFGRAGLQGRRPPVCPMPGVSVRAGLP 1102
>AF9_HUMAN (P42568) Protein AF-9 (ALL1 fused gene from chromosome 9 protein)| (Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein) Length = 568 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/90 (25%), Positives = 40/90 (44%) Frame = -2 Query: 519 SGCSMRSVKGNRSKSKDAVSVSVHPPVSQASEGSCANGASYNSDYSEAGSRLMMNGEQDL 340 S S S + S S + S S S +S S ++ +S ++ +S+ +LM ++ Sbjct: 149 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKP-HKLMKEHKEKP 207 Query: 339 LAPERNKKHGWPTTSRDKDPYEKESGKRSR 250 R K + SRD + KES K+ + Sbjct: 208 SKDSREHKSAFKEPSRDHNKSSKESSKKPK 237
>ZCH12_HUMAN (Q6PEW1) Zinc finger CCHC domain-containing protein 12| Length = 402 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -2 Query: 258 RSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 R++F S G G+K++ P +K + C CG GH + TC Sbjct: 315 RAQFPSTSGGSGYKNNG-PGEMRRARKRKHTIRCSYCGEEGHSKETC 360
>COAT_SOCMV (P15627) Coat protein| Length = 441 Score = 30.8 bits (68), Expect = 4.0 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Frame = -2 Query: 330 ERNKKHGWPTTSRDKDPYEKE----SGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKI 166 +R KK T R K P+ K+ +GK+ C +C +GH ++ CP + + + K+ Sbjct: 356 QRKKK-----TFRKKRPFRKQQTCPTGKKKCQCWLCHEEGHYANECPKKDNKKAQTLKL 409
>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = -2 Query: 282 PYEKESGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 P+ +R+ C C +GH + C + + C +CG PGH T C Sbjct: 378 PFAAAQQRRTIKCWNCGKEGHSARQC--------RAPRRQGCWKCGKPGHIMTNC 424
>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/39 (30%), Positives = 17/39 (43%) Frame = -2 Query: 234 RGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 +G G C G ++ R + C +CG PGH C Sbjct: 371 KGPGPVCFNCKRPGHLARQCRDVKKCNKCGKPGHLAAKC 409
>SOL2_YEAST (P37262) Probable 6-phosphogluconolactonase 2 (EC 3.1.1.31) (6PGL)| (Suppressor of LOS1) Length = 315 Score = 30.4 bits (67), Expect = 5.2 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = -2 Query: 393 SDYSEAGSRLMMNGEQDLLAPERNKKHGWPTTSRDKDPYEKESGKRSRFCSICRGKGHKS 214 SD +EA + +++ + LAP+ +KH P S + +E+ +S S GK S Sbjct: 15 SDVAEAVADHVVHAQDGALAPKNERKHSVPNISMNALDMTREASCKST-ASAAEGKSGSS 73 Query: 213 STCPDRGDTLKKER-KIATCG 154 + K++R KIA G Sbjct: 74 GSGSGSSKPKKEKRFKIALSG 94
>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = -2 Query: 282 PYEKESGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTC 118 P+ +R+ C C +GH + C + + C +CG PGH T C Sbjct: 378 PFAAAQQRRTIKCWNCGKEGHSARQC--------RAPRRQGCWKCGKPGHIMTNC 424
>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2| Length = 4912 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 171 KIATCGRCGVPGHRRTTCSKPLLSMMAGVPS 79 K+A CGRCG P + T + L+S+ AG P+ Sbjct: 3599 KLAVCGRCGPPSTSQ-TIADTLISLGAGTPA 3628
>SYI_FERPE (Q9XDB4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 912 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/56 (30%), Positives = 20/56 (35%) Frame = +2 Query: 416 HDPSDAWLTGGCTDTETASLDFERFPFTLLIEQPDLPSSKFAPDTPLLDTCCSTTP 583 HD D W+ GC+ ERFP L +E D F L T P Sbjct: 518 HDTLDVWMDSGCSWEAVIRSKGERFPVDLYLEGDDQHRGWFQSSIFLSTAKAGTAP 573
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -2 Query: 264 GKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSKP 109 G ++R + + S+T + + +RKI C CG GH C P Sbjct: 356 GHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHTARNCRAP 407
>PININ_PONPY (Q5R5X0) Pinin| Length = 719 Score = 30.0 bits (66), Expect = 6.9 Identities = 29/119 (24%), Positives = 45/119 (37%) Frame = -2 Query: 528 DGKSGCSMRSVKGNRSKSKDAVSVSVHPPVSQASEGSCANGASYNSDYSEAGSRLMMNGE 349 + KS RS R+++K + S S S +S S ++ + +S + SR + Sbjct: 553 ESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSS 612 Query: 348 QDLLAPERNKKHGWPTTSRDKDPYEKESGKRSRFCSICRGKGHKSSTCPDRGDTLKKER 172 ++S ES RSR R + H+ S RGDT ER Sbjct: 613 SSTSGSSSRDSSSSTSSS-------SESRSRSRGRGHNRDRKHRRSVDRKRGDTSGLER 664
>YNH7_YEAST (P53940) Hypothetical 58.9 kDa protein in TPM1-MKS1 intergenic| region Length = 528 Score = 30.0 bits (66), Expect = 6.9 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 15/110 (13%) Frame = -2 Query: 420 SCANGASYNSDYSEAGSRLMMNGEQDLLAPERNKKHGWPTTSRDKDPYEKESGK----RS 253 S NG+ N+ YS + ++ N E L + KH T K+ Y ++ K R+ Sbjct: 147 SFVNGSGVNNLYSSS-AKYNSNDEDHHLDRGPDIKHNLKCTL--KELYMGKTAKLGLNRT 203 Query: 252 RFCSICRGKGH-KSSTCPD-RGDTLKKERK---------IATCGRCGVPG 136 R CS+C G G K TC +G ++ + + TC CG G Sbjct: 204 RICSVCDGHGGLKKCTCKTCKGQGIQTQTRRMGPLVQSWSQTCADCGGAG 253
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -2 Query: 264 GKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSKP 109 G ++R + + S+T + + +RKI C CG GH C P Sbjct: 356 GHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHTARNCRAP 407
>TCFL5_HUMAN (Q9UL49) Transcription factor-like 5 protein (Cha transcription| factor) (HPV-16 E2-binding protein 1) (E2BP-1) Length = 452 Score = 29.6 bits (65), Expect = 9.0 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 23/162 (14%) Frame = -2 Query: 525 GKSGCSMRSVKGNRSKSKDA---VSVSVHPPVSQASEGSCAN-GASYNSDYSEAGSRLMM 358 G++ +++K NRS+ + V + EG+ A GA +S+ S+A Sbjct: 283 GEAALCKQALKRNRSRMRQLDTNVERRALGEIQNVGEGATATQGAWQSSESSQANL---- 338 Query: 357 NGEQDLLAPERNKKHGWPTTSRDKDPYEKESGKRSRFCS--------ICRGKGHKSSTCP 202 GEQ P+ + +R E++ +R R C C + K++T Sbjct: 339 -GEQAQSGPQGGRSQRRERHNR----MERDRRRRIRICCDELNLLVPFCNAETDKATTLQ 393 Query: 201 -----------DRGDTLKKERKIATCGRCGVPGHRRTTCSKP 109 GD+LKKE + CG+ G RR ++P Sbjct: 394 WTTAFLKYIQERHGDSLKKEFESVFCGKTG----RRLKLTRP 431
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -2 Query: 264 GKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSKP 109 G ++R + + S+T + + +RKI C CG GH C P Sbjct: 356 GHKARVLAEAMSQVTNSTTIMMQRGNFRNQRKIVKCFNCGKEGHIARNCKAP 407
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 29.6 bits (65), Expect = 9.0 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 15/74 (20%) Frame = -2 Query: 288 KDPYEKESGKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCG--------------- 154 KDP + R + C C GH + C DR +KE+K +CG Sbjct: 81 KDPKRE----RRQHCYTCGRLGHLARDC-DR----QKEQKCYSCGKLGHIQKDCAQVKCY 131 Query: 153 RCGVPGHRRTTCSK 112 RCG GH CSK Sbjct: 132 RCGEIGHVAINCSK 145
>ZN533_MOUSE (Q8BXJ8) Zinc finger protein 533| Length = 482 Score = 29.6 bits (65), Expect = 9.0 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 18/134 (13%) Frame = -2 Query: 579 VVEQQVSNNGVSGANLLDGKSGCSMRSVKGNRSK-----SKDAV----SVSVHPPVSQAS 427 V + + +++ + A+ K +++++ ++K SKD+ S S+ P +S Sbjct: 173 VCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVPSKDSAKANPSCSIRPGTGDSS 232 Query: 426 EGSCANG-----ASYNSDYSEAGSRLMMNGEQDL----LAPERNKKHGWPTTSRDKDPYE 274 + S G +S SE GS L+ +G L +A +G P + + E Sbjct: 233 DKSEDKGKIKATSSSQPSGSEGGSFLLKSGTTPLPLGAIASPSKSTNGAPGSVAES---E 289 Query: 273 KESGKRSRFCSICR 232 +E K+ +CS+C+ Sbjct: 290 EEKAKKLLYCSLCK 303
>DNAJ_METMA (P35515) Chaperone protein dnaJ| Length = 389 Score = 29.6 bits (65), Expect = 9.0 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = -2 Query: 258 RSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCS 115 R+ CS C G G K T P R C CG G RTT S Sbjct: 140 RTERCSTCSGTGAKPGTSPKR------------CPNCGGTGQVRTTRS 175
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -2 Query: 264 GKRSRFCSICRGKGHKSSTCPDRGDTLKKERKIATCGRCGVPGHRRTTCSKP 109 G ++R + + S+T + + +RKI C CG GH C P Sbjct: 356 GHKARVLAEAMSQVTNSTTIMMQRGNFRNQRKIVKCFNCGKEGHIARNCKAP 407 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,653,358 Number of Sequences: 219361 Number of extensions: 2373039 Number of successful extensions: 8369 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 7629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8336 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
