>ref|XM_550166.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2506

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                        
Query: 215  tatgataaaatgagatcattgtcgccaagatgcngnggcctcatgcaaacctgaacttca 274
            ||||||||||  ||||| || || ||||| ||  | ||||||||||||||||| ||||||
Sbjct: 2063 tatgataaaagaagatcgttttcaccaaggtgtgggggcctcatgcaaacctggacttca 2004

                                                                        
Query: 275  tgctcctccggcccgacacngtgcttcgggaccatgatctncancccagtaccggtctcg 334
            ||||| || || || || | |||||| ||||||||||| | ||  ||||| || ||||||
Sbjct: 2003 tgctcttcgggtccaactcggtgcttggggaccatgatttccagtccagtgccagtctcg 1944

                            
Query: 335  tcgtaatacgcctcga 350
            || |||||||| ||||
Sbjct: 1943 tcataatacgcttcga 1928

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                           
Query: 215     tatgataaaatgagatcattgtcgccaagatgcngnggcctcatgcaaacctgaacttca 274
               ||||||||||  ||||| || || ||||| ||  | ||||||||||||||||| ||||||
Sbjct: 2767159 tatgataaaagaagatcgttttcaccaaggtgtgggggcctcatgcaaacctggacttca 2767100

                                                                           
Query: 275     tgctcctccggcccgacacngtgcttcgggaccatgatctncancccagtaccggtctcg 334
               ||||| || || || || | |||||| ||||||||||| | ||  ||||| || ||||||
Sbjct: 2767099 tgctcttcgggtccaactcggtgcttggggaccatgatttccagtccagtgccagtctcg 2767040

                               
Query: 335     tcgtaatacgcctcga 350
               || |||||||| ||||
Sbjct: 2767039 tcataatacgcttcga 2767024

>gb|AY772090.1| Oryza sativa (japonica cultivar-group) sodium-lithium tolerant 2
            (SLT2) mRNA, complete cds
          Length = 1993

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                        
Query: 215  tatgataaaatgagatcattgtcgccaagatgcngnggcctcatgcaaacctgaacttca 274
            ||||||||||  ||||| || || ||||| ||  | ||||||||||||||||| ||||||
Sbjct: 1856 tatgataaaagaagatcgttttcaccaaggtgtgggggcctcatgcaaacctggacttca 1797

                                                                        
Query: 275  tgctcctccggcccgacacngtgcttcgggaccatgatctncancccagtaccggtctcg 334
            ||||| || || || || | |||||| ||||||||||| | ||  ||||| || ||||||
Sbjct: 1796 tgctcttcgggtccaactcggtgcttggggaccatgatttccagtccagtgccagtctcg 1737

                            
Query: 335  tcgtaatacgcctcga 350
            || |||||||| ||||
Sbjct: 1736 tcataatacgcttcga 1721

>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0009G03
          Length = 163526

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                         
Query: 215   tatgataaaatgagatcattgtcgccaagatgcngnggcctcatgcaaacctgaacttca 274
             ||||||||||  ||||| || || ||||| ||  | ||||||||||||||||| ||||||
Sbjct: 72836 tatgataaaagaagatcgttttcaccaaggtgtgggggcctcatgcaaacctggacttca 72777

                                                                         
Query: 275   tgctcctccggcccgacacngtgcttcgggaccatgatctncancccagtaccggtctcg 334
             ||||| || || || || | |||||| ||||||||||| | ||  ||||| || ||||||
Sbjct: 72776 tgctcttcgggtccaactcggtgcttggggaccatgatttccagtccagtgccagtctcg 72717

                             
Query: 335   tcgtaatacgcctcga 350
             || |||||||| ||||
Sbjct: 72716 tcataatacgcttcga 72701

>dbj|AK120777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009J05, full
            insert sequence
          Length = 2507

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                        
Query: 215  tatgataaaatgagatcattgtcgccaagatgcngnggcctcatgcaaacctgaacttca 274
            ||||||||||  ||||| || || ||||| ||  | ||||||||||||||||| ||||||
Sbjct: 2063 tatgataaaagaagatcgttttcaccaaggtgtgggggcctcatgcaaacctggacttca 2004

                                                                        
Query: 275  tgctcctccggcccgacacngtgcttcgggaccatgatctncancccagtaccggtctcg 334
            ||||| || || || || | |||||| ||||||||||| | ||  ||||| || ||||||
Sbjct: 2003 tgctcttcgggtccaactcggtgcttggggaccatgatttccagtccagtgccagtctcg 1944

                            
Query: 335  tcgtaatacgcctcga 350
            || |||||||| ||||
Sbjct: 1943 tcataatacgcttcga 1928

>dbj|AK038364.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130098P13 product:CDNA FLJ10678 FIS,
            CLONE NT2RP2006472 homolog [Homo sapiens], full insert
            sequence
          Length = 4233

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 186  aagctaaattgctttctttcct 207
            ||||||||||||||||||||||
Sbjct: 2229 aagctaaattgctttctttcct 2208

>emb|AL683878.9| Mouse DNA sequence from clone RP23-201G13 on chromosome 2, complete
              sequence
          Length = 195221

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 186    aagctaaattgctttctttcct 207
              ||||||||||||||||||||||
Sbjct: 182686 aagctaaattgctttctttcct 182707

>gb|AC159411.1| Trypanosoma brucei chromosome 3 clone RPCI93-1J15, complete sequence
          Length = 157158

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   tcatgcaaacctgaacttcat 275
             |||||||||||||||||||||
Sbjct: 21618 tcatgcaaacctgaacttcat 21638

>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 255    tcatgcaaacctgaacttcat 275
              |||||||||||||||||||||
Sbjct: 400258 tcatgcaaacctgaacttcat 400238

>ref|XM_818660.1| Trypanosoma brucei TREU927 clone RPCI93-1J15 hypothetical protein
            (Tb927.3.1530) partial mRNA
          Length = 1284

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 255  tcatgcaaacctgaacttcat 275
            |||||||||||||||||||||
Sbjct: 984  tcatgcaaacctgaacttcat 1004

>emb|BX927225.7| Zebrafish DNA sequence from clone CH211-106F9 in linkage group 6,
              complete sequence
          Length = 161068

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 190    taaattgctttctttcctgtt 210
              |||||||||||||||||||||
Sbjct: 103916 taaattgctttctttcctgtt 103896

>gb|AC129975.21| Mus musculus chromosome 14, clone RP23-447I12, complete sequence
          Length = 168905

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 243    gatgcngnggcctcatgcaaacctgaa 269
              ||||| | |||||||||||||||||||
Sbjct: 108607 gatgctgaggcctcatgcaaacctgaa 108581

>gb|AC152978.1| Mus musculus  BAC RP23-111A15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 180393

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     aaagaaagtacagaggggaa 71
              ||||||||||||||||||||
Sbjct: 156852 aaagaaagtacagaggggaa 156871

>gb|AC159318.4| Mus musculus BAC clone RP23-76M13 from chromosome 12, complete sequence
          Length = 269200

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 199   ttctttcctgttctattatgataaaatg 226
             |||||| ||| |||||||||||||||||
Sbjct: 54260 ttctttactgatctattatgataaaatg 54233

>emb|AL160408.24| Human DNA sequence from clone RP4-781K5 on chromosome 1q42.1-43,
             complete sequence
          Length = 132887

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   ttgctttctttcctgttcta 213
             ||||||||||||||||||||
Sbjct: 55666 ttgctttctttcctgttcta 55685

>emb|AL138898.19| Human DNA sequence from clone RP11-401F24 on chromosome 10 Contains
             gene FLJ20909, the gene for a novel protein (MGC35403), a
             novel gene (LOC219731), the 3' end of the UPF2 gene for
             UPF2 regulator of nonsense transcripts homolog (yeast)
             (FLJ38872) and four CpG islands, complete sequence
          Length = 206587

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   aagaagctaaattgctttct 202
             ||||||||||||||||||||
Sbjct: 33180 aagaagctaaattgctttct 33199

>gb|BC032040.1| Homo sapiens cDNA clone IMAGE:4825891
          Length = 1387

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 ttgctttctttcctgttcta 213
           ||||||||||||||||||||
Sbjct: 907 ttgctttctttcctgttcta 926

>gb|AC008919.9| Homo sapiens chromosome 5 clone CTD-2276O24, complete sequence
          Length = 106689

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   tgctttctttcctgttctat 214
             ||||||||||||||||||||
Sbjct: 27511 tgctttctttcctgttctat 27530

>emb|BX649642.7| Zebrafish DNA sequence from clone CH211-136J9 in linkage group 18,
             complete sequence
          Length = 160427

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   tcatgcaaacctgaacttca 274
             ||||||||||||||||||||
Sbjct: 44861 tcatgcaaacctgaacttca 44880

>dbj|AK032063.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330568D16
           product:unclassifiable, full insert sequence
          Length = 3090

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 199 ttctttcctgttctattatgataaaatg 226
           |||||| ||| |||||||||||||||||
Sbjct: 559 ttctttactgatctattatgataaaatg 586

>gb|AC112187.2| Homo sapiens chromosome 5 clone RP11-269M20, complete sequence
          Length = 186165

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    tgctttctttcctgttctat 214
              ||||||||||||||||||||
Sbjct: 181220 tgctttctttcctgttctat 181239

>gb|AC157819.5| Mus musculus chromosome 3, clone RP24-273H20, complete sequence
          Length = 151601

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 189   ctaaattgctttctttcctgttct 212
             ||||||||||||||||||| ||||
Sbjct: 77090 ctaaattgctttctttcctcttct 77113

>emb|BX649566.3| Zebrafish DNA sequence from clone CH211-15I6 in linkage group 18,
             complete sequence
          Length = 171626

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   tcatgcaaacctgaacttca 274
             ||||||||||||||||||||
Sbjct: 95849 tcatgcaaacctgaacttca 95868

>emb|BX469898.9| Zebrafish DNA sequence from clone DKEY-180H12 in linkage group 18,
             complete sequence
          Length = 185729

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ctgttctattatgataaaat 225
             ||||||||||||||||||||
Sbjct: 68216 ctgttctattatgataaaat 68197

>gb|AC126685.5| Mus musculus BAC clone RP23-103I23 from chromosome 12, complete sequence
          Length = 193708

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 199    ttctttcctgttctattatgataaaatg 226
              |||||| ||| |||||||||||||||||
Sbjct: 160035 ttctttactgatctattatgataaaatg 160008

>gb|AC096784.17| Mus musculus strain C57BL/6J chromosome 10 clone rp23-232l11, complete
             sequence
          Length = 202124

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    aaagaaagtacagaggggaa 71
             ||||||||||||||||||||
Sbjct: 66989 aaagaaagtacagaggggaa 67008

>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence
          Length = 179805

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 189    ctaaattgctttctttcctgttct 212
              ||||||||||||||||||| ||||
Sbjct: 150347 ctaaattgctttctttcctcttct 150370

>emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, complete sequence
          Length = 174143

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   tcatgcaaacctgaacttca 274
             ||||||||||||||||||||
Sbjct: 10474 tcatgcaaacctgaacttca 10493

>emb|AL831770.3| Human DNA sequence from clone RP13-297M11 on chromosome 1, complete
             sequence
          Length = 151857

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   tgctttctttcctgttctat 214
             ||||||||||||||||||||
Sbjct: 76843 tgctttctttcctgttctat 76824

>emb|AL590996.12| Mouse DNA sequence from clone RP23-328K2 on chromosome 11, complete
             sequence
          Length = 139242

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   ctaaattgctttctttcctg 208
             ||||||||||||||||||||
Sbjct: 66192 ctaaattgctttctttcctg 66211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,072,956
Number of Sequences: 3902068
Number of extensions: 2072956
Number of successful extensions: 36927
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36869
Number of HSP's gapped (non-prelim): 58
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)