ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7b21 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 175 bits (443), Expect = 1e-43 Identities = 91/124 (73%), Positives = 100/124 (80%) Frame = -3 Query: 641 LVEFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSNATEPTVLDKLCAAL 462 LVEFSS+DGEIE+ILKDISERAQGKG+FSYSRFFAVGLFRLLEL+NATEPT+LDKLCAAL Sbjct: 164 LVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAAL 223 Query: 461 NINKKSVDRDLDVYRNLLSKLVQAXXXXXXXXXXXXXXXXXXXETPKPNEAVAKFDGSTY 282 NINK+SVDRDLDVYRN+LSKLVQA ETPK NEAV KFDGS Sbjct: 224 NINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTKFDGSLN 283 Query: 281 PLKH 270 ++H Sbjct: 284 SMRH 287
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 140 bits (354), Expect = 2e-33 Identities = 74/119 (62%), Positives = 89/119 (74%) Frame = -3 Query: 641 LVEFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSNATEPTVLDKLCAAL 462 LV+FSS++G+IE++LKDI+ RA K FSYSRFFAVGLFRLLEL++AT+PTVLDKLCA+L Sbjct: 170 LVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASL 229 Query: 461 NINKKSVDRDLDVYRNLLSKLVQAXXXXXXXXXXXXXXXXXXXETPKPNEAVAKFDGST 285 NINKKSVDRDLDVYRNLLSKLVQA ++ K NE ++K G T Sbjct: 230 NINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDT 288
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 133 bits (334), Expect = 5e-31 Identities = 65/84 (77%), Positives = 76/84 (90%) Frame = -3 Query: 641 LVEFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSNATEPTVLDKLCAAL 462 LV+FSS++GEIE+I KDI++RA K F YSR FAVGLFRLLEL+N T+PT+L+KLCAAL Sbjct: 171 LVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAAL 230 Query: 461 NINKKSVDRDLDVYRNLLSKLVQA 390 N+NKKSVDRDLDVYRNLLSKLVQA Sbjct: 231 NVNKKSVDRDLDVYRNLLSKLVQA 254
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 50.4 bits (119), Expect = 4e-06 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%) Frame = -3 Query: 623 RDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSN-------ATEPTVLDKLCAA 465 +D ++++ L+ I+ + NF YSR FA+GLF LLE SN L + A Sbjct: 122 QDADLQAQLQAIANNS----NFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAG 177 Query: 464 LNINKKSVDRDLDVYRNLLSKLVQA 390 L+++ +DL++YR+ L K+ QA Sbjct: 178 LHLSDDKFSKDLELYRSNLDKMTQA 202
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 50.1 bits (118), Expect = 6e-06 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%) Frame = -3 Query: 623 RDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSN-------ATEPTVLDKLCAA 465 +D ++++ L+ I+ NF YSR FA+GLF LLE SN L + A Sbjct: 122 QDADLQAQLQAIASNP----NFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAG 177 Query: 464 LNINKKSVDRDLDVYRNLLSKLVQA 390 L+++ + +DL++YR+ L K+ QA Sbjct: 178 LHLSDDKLSKDLELYRSNLDKMTQA 202
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%) Frame = -3 Query: 617 GEIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----N 459 G +++ + G+ F YSR FA+GLF LLE + +P L A+ + Sbjct: 121 GNAPELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFH 180 Query: 458 INKKSVDRDLDVYRNLLSKLVQA 390 + + +DLD+YR+ L K+ QA Sbjct: 181 LPSDKLQKDLDLYRSNLEKMEQA 203
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%) Frame = -3 Query: 617 GEIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----N 459 G +++ + G+ F YSR FA+GLF LLE + +P L A+ + Sbjct: 121 GNAPELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFH 180 Query: 458 INKKSVDRDLDVYRNLLSKLVQA 390 + + +DLD+YR+ L K+ QA Sbjct: 181 LPSDKLQKDLDLYRSNLEKMEQA 203
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 7/83 (8%) Frame = -3 Query: 617 GEIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSNATEPT-------VLDKLCAALN 459 G E++ K + A G F YSR AVGL LL + E + + +L ++ Sbjct: 120 GAPEALAKALRNTA-GSTTFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVG 178 Query: 458 INKKSVDRDLDVYRNLLSKLVQA 390 +K V++DL++Y++ L K+ QA Sbjct: 179 FSKARVEKDLNLYKSNLEKMAQA 201
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 38.5 bits (88), Expect = 0.017 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Frame = -3 Query: 635 EFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLL-----ELSNATE--PTVLDK 477 E +S D + + L I +R + F YSR FA+GL+ LL E+ + E L + Sbjct: 117 EQASGDNLLLNTLTGIHQRHK----FKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTR 172 Query: 476 LCAALNINKKSVDRDLDVYRNLLSKLVQ 393 L L+++ V +DLD+YR+ L K+ Q Sbjct: 173 LSELLDLSLDKVVKDLDLYRSNLEKVDQ 200
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 37.0 bits (84), Expect = 0.050 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Frame = -3 Query: 599 LKDISERAQGKGN---FSYSRFFAVGLFRLLE-------LSNATEPTVLDKLCAALNINK 450 LK + + G N F YSR F++GL +LE +S L ++C L ++ Sbjct: 125 LKAMGDTLAGIANAERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDY 184 Query: 449 KSVDRDLDVYRNLLSKL 399 V RDLD + ++L ++ Sbjct: 185 NRVKRDLDFFHSVLERI 201
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 36.6 bits (83), Expect = 0.065 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%) Frame = -3 Query: 554 YSRFFAVGLFRLLELSNATEPTV-----LDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 390 YSR AVGL+ L+ A E T+ LD+L + + + V RDL++YR+ L K+ QA Sbjct: 131 YSRLHAVGLYAFLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRSNLDKINQA 189
>THF1_PROMA (Q7VC23) Protein thf1| Length = 214 Score = 34.3 bits (77), Expect = 0.32 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Frame = -3 Query: 614 EIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSN-----ATEPTVLDKLCAALNINK 450 EI+ + I+ Q + YSR A+G++ L+ N + ++ + AL +K Sbjct: 117 EIKKSVGGIALSNQSGKDKYYSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSK 176 Query: 449 KSVDRDLDVYRNLLSKL 399 V++D++ Y+N + K+ Sbjct: 177 DRVEKDINQYKNSMEKI 193
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 33.1 bits (74), Expect = 0.72 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Frame = -3 Query: 599 LKDISERAQGKGNFSYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKS 444 LK I ER + ++YSR AVGL+ E+ S EP L+ + + L + + Sbjct: 126 LKAILERMT-QPPYAYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTER 184 Query: 443 VDRDLDVYRNLLSKLVQA 390 V +DL++YR+ L ++ QA Sbjct: 185 VRKDLELYRSSLDRMKQA 202
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 31.2 bits (69), Expect = 2.7 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Frame = -3 Query: 560 FSYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLS 405 ++YSR AVGL+ E S EP L+ + L + + V +DL++YR+ L Sbjct: 138 YAYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLD 197 Query: 404 KLVQA 390 +L QA Sbjct: 198 RLKQA 202
>HMCS1_RAT (P17425) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -3 Query: 629 SSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPTVLDKLCAALN 459 SS G + S+L S ++ GK G FSY A L+ L +AT + LDK+ A+L Sbjct: 347 SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLC 406 Query: 458 INKKSVD 438 K +D Sbjct: 407 DLKSRLD 413
>HMCS1_PONPY (Q5R7Z9) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -3 Query: 629 SSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPTVLDKLCAALN 459 SS G + S+L S ++ GK G FSY A L+ L +AT + LDK+ A+L Sbjct: 347 SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLC 406 Query: 458 INKKSVD 438 K +D Sbjct: 407 DLKSRLD 413
>HMCS1_MOUSE (Q8JZK9) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -3 Query: 629 SSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPTVLDKLCAALN 459 SS G + S+L S ++ GK G FSY A L+ L +AT + LDK+ A+L Sbjct: 347 SSVYGSLASVLAQYSPQQLAGKRVGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLC 406 Query: 458 INKKSVD 438 K +D Sbjct: 407 DLKSRLD 413
>HMCS1_HUMAN (Q01581) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -3 Query: 629 SSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPTVLDKLCAALN 459 SS G + S+L S ++ GK G FSY A L+ L +AT + LDK+ A+L Sbjct: 347 SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLC 406 Query: 458 INKKSVD 438 K +D Sbjct: 407 DLKSRLD 413
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 30.4 bits (67), Expect = 4.7 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Frame = -3 Query: 629 SSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLLE--LSNATEPTVLD------KL 474 +++ ++++ ++ + G+G+ YSR A+G+ RL E +A +P D +L Sbjct: 101 AAKTESVDAMDSHLAGQKLGEGSH-YSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKEL 159 Query: 473 CAALNINKKSVDRDLDVY 420 ALN + V++DL ++ Sbjct: 160 STALNFPAERVEKDLSLF 177
>GFAP_HUMAN (P14136) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 432 Score = 30.4 bits (67), Expect = 4.7 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -2 Query: 501 DGANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESREIGD 328 D A R + LR +KH+ +R +L LT ++ S +GT+ + R+ +E+E R + + Sbjct: 266 DAAARNAELLRQAKHEANDYRR-----QLQSLTCDLESLRGTNESLERQMREQEERHVRE 320 Query: 327 A 325 A Sbjct: 321 A 321
>HMCS1_CRIGR (P13704) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 30.0 bits (66), Expect = 6.1 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -3 Query: 629 SSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPTVLDKLCAALN 459 SS G + S+L S ++ GK G FSY A L+ L +AT + LDK+ A+L Sbjct: 347 SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKVTASLC 406 Query: 458 INKKSVD 438 K +D Sbjct: 407 DLKSRLD 413
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.1 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -3 Query: 230 QILTVIH-LDSVENYRGHLWLLLAWCSTR 147 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.1 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -3 Query: 230 QILTVIH-LDSVENYRGHLWLLLAWCSTR 147 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.1 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -3 Query: 230 QILTVIH-LDSVENYRGHLWLLLAWCSTR 147 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,628,102 Number of Sequences: 219361 Number of extensions: 1600687 Number of successful extensions: 4240 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4230 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
