>VSR1_ARATH (P93026) Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal|
           growth factor receptor-like protein 1) (AtELP1) (AtELP)
           (BP80-like protein b) (AtBP80b) (Spot 3 protein)
          Length = 623

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 34/64 (53%), Positives = 45/64 (70%)
 Frame = -1

Query: 439 KQXASSVGWSFMWVIXFGLVFAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDSQEGANQ 260
           K   + + WSF+W++  G+  AG+  YAVYKYR+RSYMD+EIR IMAQYMPL+SQ     
Sbjct: 558 KVGTTKLSWSFLWILIIGVGVAGLSGYAVYKYRIRSYMDAEIRGIMAQYMPLESQPPNTS 617

Query: 259 QQHV 248
             H+
Sbjct: 618 GHHM 621

>VSR2_ARATH (O22925) Vacuolar sorting receptor 2 precursor (AtVSR2) (Epidermal|
           growth factor receptor-like protein 4) (AtELP4)
           (BP80-like protein c) (AtBP80c)
          Length = 625

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 34/57 (59%), Positives = 42/57 (73%)
 Frame = -1

Query: 448 CISKQXASSVGWSFMWVIXFGLVFAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDS 278
           CI++       W  +W+I  GL  A +GAY VYKYR+R+YMDSEIRAIMAQYMPLD+
Sbjct: 557 CINRDARGDFSWGVIWIIIMGLGAAALGAYTVYKYRIRTYMDSEIRAIMAQYMPLDN 613

>VSR3_ARATH (O80977) Vacuolar sorting receptor 3 precursor (AtVSR3) (Epidermal|
           growth factor receptor-like protein 2a) (AtELP2a)
           (BP80-like protein a') (AtBP80a')
          Length = 628

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 39/59 (66%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = -1

Query: 448 CISKQXAS-SVGWSFMWVIXFGLVFAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDSQ 275
           CISK  A     W+ +W+I   L  A  GAY VYKYRLR YMDSEIRAIMAQYMPLDSQ
Sbjct: 558 CISKTGAQVRSAWAAVWLIMLSLGLAAAGAYLVYKYRLRQYMDSEIRAIMAQYMPLDSQ 616

>VSR4_ARATH (Q56ZQ3) Vacuolar sorting receptor 4 precursor (AtVSR4) (Epidermal|
           growth factor receptor-like protein 2b) (AtELP2b)
           (BP80-like protein a) (AtBP80a)
          Length = 628

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 38/59 (64%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = -1

Query: 448 CISKQXAS-SVGWSFMWVIXFGLVFAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDSQ 275
           CISK  +     W+ +W+I   L  A  GAY VYKYRLR YMDSEIRAIMAQYMPLDSQ
Sbjct: 558 CISKTGSQVKSAWAAVWLIMLSLGLAAAGAYLVYKYRLRQYMDSEIRAIMAQYMPLDSQ 616

>VSR1_PEA (P93484) Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa|
           proaleurein-binding protein)
          Length = 623

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 38/68 (55%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
 Frame = -1

Query: 448 CISKQXASSVG-WSFMWVIXFGLVFAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDSQ- 275
           CISK  + +   W+  WV+   L     G + VYKYR+R YMDSEIRAIMAQYMPLDSQ 
Sbjct: 553 CISKTASQAKSTWAAFWVVLIALAMIAGGGFLVYKYRIRQYMDSEIRAIMAQYMPLDSQE 612

Query: 274 EGANQQQH 251
           EG N   H
Sbjct: 613 EGPNHVNH 620

>VSR6_ARATH (Q9FYH7) Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal|
           growth factor receptor-like protein 6) (AtELP6)
           (BP80-like protein d) (AtBP80d)
          Length = 622

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 33/58 (56%), Positives = 39/58 (67%)
 Frame = -1

Query: 448 CISKQXASSVGWSFMWVIXFGLVFAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDSQ 275
           CI +   S +GW   +VI   +    VG Y  YKYRLRSYMDSEI AIM+QYMPL+SQ
Sbjct: 545 CIERS-GSRIGWFPTFVILAAVASICVGGYVFYKYRLRSYMDSEIMAIMSQYMPLESQ 601

>VSR7_ARATH (Q8L7E3) Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal|
           growth factor receptor-like protein 3) (AtELP3)
           (BP80-like protein f) (AtBP80f)
          Length = 625

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 29/58 (50%), Positives = 36/58 (62%)
 Frame = -1

Query: 448 CISKQXASSVGWSFMWVIXFGLVFAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDSQ 275
           CI +   S   W   ++I   +  AG+  Y  YKYR RSYMDSEI  IM+QYMPL+SQ
Sbjct: 555 CIERY-GSKTAWWLTFLILAIVAVAGLAGYIFYKYRFRSYMDSEIMTIMSQYMPLESQ 611

>VSR5_ARATH (O64758) Vacuolar sorting receptor 5 precursor (AtVSR5) (Epidermal|
           growth factor receptor-like protein 5) (AtELP5)
           (BP80-like protein e) (AtBP80e)
          Length = 618

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 28/58 (48%), Positives = 37/58 (63%)
 Frame = -1

Query: 448 CISKQXASSVGWSFMWVIXFGLVFAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDSQ 275
           CI ++  S     F  V+   +    +GAY  YKY L+SYMDSEI +IM+QY+PLDSQ
Sbjct: 553 CIERRSGSRSRGLFTIVVLTAIAGISLGAYIFYKYHLQSYMDSEIVSIMSQYIPLDSQ 610

>ZN546_HUMAN (Q86UE3) Zinc finger protein 546|
          Length = 836

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 443 QQAXCLXSRVELHVGYFXWTCICRGRSICSIQIQATELHGFGDPRHHGSVHAFGQPRRCK 264
           +Q   L   + +H G   + C+  G++ C +          GD R H ++HA  +P  CK
Sbjct: 227 RQQSYLIQHLRIHTGERPYKCMECGKAFCRV----------GDLRVHHTIHAGERPYECK 276

>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 306  SWLSTCLWTAKKVQTSNSMWRMLVISETR 220
            +W   CLW+ K V TSNS + +L + +T+
Sbjct: 1982 TWCLRCLWSTKPVDTSNS-FEVLAVEDTQ 2009

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 306  SWLSTCLWTAKKVQTSNSMWRMLVISETR 220
            +W   CLW+ K V TSNS + +L + +T+
Sbjct: 1984 TWCLRCLWSTKPVDTSNS-FEVLAVEDTQ 2011

>BPHA_PSEPS (Q52028) Biphenyl dioxygenase alpha subunit (EC 1.14.12.18)|
           (Biphenyl 2,3-dioxygenase)
          Length = 458

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 316 IRAIMAQYMPLDSQEGANQQQ--HVAHAGDI*DQMAHEACSIFYHGWRRLYS 167
           +R   A+  PL++Q G  + Q  H    G++    A EA    YH W R+ S
Sbjct: 398 LRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMS 449

>BPHA_BURCE (P37333) Biphenyl dioxygenase alpha subunit (EC 1.14.12.18)|
           (Biphenyl 2,3-dioxygenase)
          Length = 458

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 316 IRAIMAQYMPLDSQEGANQQQ--HVAHAGDI*DQMAHEACSIFYHGWRRLYS 167
           +R   A+  PL++Q G  + Q  H    G++    A EA    YH W R+ S
Sbjct: 398 LRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMS 449

>THB2_RAT (P37826) Thyroid hormone receptor beta-2|
          Length = 514

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 280 CPKACTEP*WRGSPNPCSSVACIC 351
           CP  CT P  RG  + C    CIC
Sbjct: 7   CPSICTAPGSRGLASACMERVCIC 30

>Y2597_MYCBO (P59974) Hypothetical protein Mb2597|
          Length = 884

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 345 TGYGATWIRRSAPSWLSTCLWTAKKVQTSNSMWRMLVISETRWHTKR 205
           TG G TW   S+P  LS   W  +  + + +M R+L+++  R+H  R
Sbjct: 529 TGAG-TWAV-SSPRVLSDLFWMGRYGERAENMARLLIVTRERYHVFR 573

>Y2567_MYCTU (Q50654) Hypothetical protein Rv2567/MT2643|
          Length = 884

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 345 TGYGATWIRRSAPSWLSTCLWTAKKVQTSNSMWRMLVISETRWHTKR 205
           TG G TW   S+P  LS   W  +  + + +M R+L+++  R+H  R
Sbjct: 529 TGAG-TWAV-SSPRVLSDLFWMGRYGERAENMARLLIVTRERYHVFR 573

>DNA2_SCHPO (Q9URU2) DNA replication ATP-dependent helicase dna2 (EC 3.6.1.-)|
          Length = 1398

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 152 CTRGDLMYDSRSYTVVHLH--FVRHDEQH-RRYCPPLSALDXLH 30
           CT G+L   S  YTV+ +H  F+ H+  H R+    L A D LH
Sbjct: 349 CTPGELCEFSSEYTVLEVHEDFIFHEGNHFRQLKLILEANDILH 392

>HAM_DROME (Q8I7Z8) Transcription factor hamlet|
          Length = 990

 Score = 25.4 bits (54), Expect(2) = 9.5
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +1

Query: 145 RVQIVSLRCKADATHGKICCTLRVPSGLRYHQHAPHAVAGLHLLGCPKACTE 300
           R   V  RC      GK   T    SGL+ HQH   +V       C KA T+
Sbjct: 300 RAYHVGARCHPCPECGK---TFGTSSGLKQHQHIHSSVKPFACEVCSKAYTQ 348



 Score = 21.2 bits (43), Expect(2) = 9.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 353 YCICSDPGKYKSKXNNPHEAPP 418
           +C  + PG Y+++  N H   P
Sbjct: 387 FCDSTGPGPYRNQHVNRHHQHP 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,666,265
Number of Sequences: 219361
Number of extensions: 1533378
Number of successful extensions: 3846
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3842
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)