>NU5M_PICCA (Q37024) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3)|
          Length = 644

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
 Frame = +2

Query: 398 YGSIDWICLRLNAPMINKLARSFHILCILYIPAFFMSIHH--IWENWSILNTSCQAV--- 562
           Y +ID I   LNA  INK+   F I+ ++Y+   + S+++  I+   S +N     +   
Sbjct: 154 YNNIDNIKSSLNALFINKIGDIFFIIALIYLIYIYKSLNYSLIFSLVSYINIDINNIIIL 213

Query: 563 -----QTISNAQFGFH 595
                 +  +AQFG H
Sbjct: 214 CLVIAASAKSAQFGLH 229

>Y1184_SYNP6 (P08442) Hypothetical protein syc1184_c|
          Length = 417

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/84 (21%), Positives = 40/84 (47%)
 Frame = -3

Query: 649 QLKKSSFRQLQDAVSQLDVKTKLCIRDGLYRLARSVQNRPVFPNVMNRHEESWDVKDTQN 470
           ++ ++  RQ+Q+A++ L  + +   RDG+          P    +  R EE W +++ ++
Sbjct: 180 EIGRAEIRQMQEAIALLQGERRGDYRDGVAIGREIFSQLPANNRLRRREEERWALENQRD 239

Query: 469 METSGKFVDHRSIETQTNPIDRSI 398
              +  +V  + I+  T  + R I
Sbjct: 240 ECFADMYVHPQEIDYNTETLRRWI 263

>U360_SCHJA (Q5DHJ5) UPF0360 protein|
          Length = 330

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 407 IDWICLRLNAPMINKLARSFHILCILYIPAFFMSIHHIWENWSIL 541
           +D IC  L+ P+ N    S H+L  LY+   F +  H  +N S++
Sbjct: 287 VDIICALLDIPVYNNRIHSLHLLFSLYLE--FKNSQHFRQNESVI 329

>CHER_LISIN (Q92DX0) Chemotaxis protein methyltransferase (EC 2.1.1.80)|
          Length = 262

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +3

Query: 153 GTYHTISGKHLHSRRR*LQYINKGDSIKVVLESSQAISNNFHNINQPSFSRGLVVLVMR 329
           G Y +   + L+ + R   +I KGD+ +++ E  +AI    H++    + +G  ++V R
Sbjct: 149 GEYQSRQMEELNEQERRSAFIEKGDTYQILPEYRKAIRFRRHDLLTDYYEKGFDLIVCR 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,495,408
Number of Sequences: 219361
Number of extensions: 1978757
Number of successful extensions: 4393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4393
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)