>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)|
          Length = 1159

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 446 PETKQDKSIPAEQKHRSSTTESDKENG 366
           P  KQ+KS      H+S T   DKENG
Sbjct: 228 PSAKQNKSFSGNDSHKSLTDIRDKENG 254

>MURD_DEIRA (Q9RRJ4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 457

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 300 PVPGLKPGGHPANLHASLLAGGAV 371
           PV  L PG HPAN  A+LLA  A+
Sbjct: 256 PVADLPPGVHPANAAAALLAAEAL 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,963,190
Number of Sequences: 219361
Number of extensions: 1104761
Number of successful extensions: 2603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2603
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)