ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region 27 7.3
2GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 m... 29 8.4

>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region|
          Length = 153

 Score = 26.6 bits (57), Expect(2) = 7.3
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +3

Query: 54  QSSDLRIMVP-PHSLQHPLLPRSNADSIARQHTQTPLPH 167
           Q SD+ I  P PH   HP  P          HT TP PH
Sbjct: 13  QYSDIYIHTPHPHPHPHPHTPTHT-----HPHTPTPTPH 46



 Score = 21.6 bits (44), Expect(2) = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 154 HHCHTSHTVL 183
           HH HT HT L
Sbjct: 63  HHTHTPHTTL 72



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>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A|
           precursor
          Length = 928

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 454 DAFHGDKAHGGVHDGTEVVLWKWCEG 377
           ++FH D AHG ++ G EVVLWK   G
Sbjct: 460 NSFHFD-AHGDLNTGYEVVLWKETNG 484


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,680,181
Number of Sequences: 219361
Number of extensions: 1073966
Number of successful extensions: 3925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3924
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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