ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal15p09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D06, full insert sequence Length = 1373 Score = 188 bits (95), Expect = 1e-44 Identities = 184/216 (85%) Strand = Plus / Minus Query: 211 gagaaaatgttcatcanagtgncgagcgcctcggggtanaatttccgtgcgaataggtag 270 |||||||||||||||| | || |||| |||||||| || ||||||||||| ||||||||| Sbjct: 1154 gagaaaatgttcatcagattgtcgagtgcctcgggatagaatttccgtgcaaataggtag 1095 Query: 271 caaggcctcttcatgccggtccacatgcacggtcttcnctgcattncatgctttgcgntg 330 ||||||||||||||||| |||| | ||||||||||| | || | |||||||| || Sbjct: 1094 caaggcctcttcatgccattccataggcacggtcttctcatcacttggtgctttgcattg 1035 Query: 331 ctggtcacgtgaatgctctcatcaatggacgctatacttttaagcaggtnaaagcttgtg 390 || || || ||||| |||||||||||||||| ||| | |||||||| | |||||||||| Sbjct: 1034 cttgtaacatgaatactctcatcaatggacgaaatattcttaagcagttcaaagcttgtg 975 Query: 391 tcaacagccctataaactttaggatgccattttcct 426 ||||||||||| ||| |||||||||||||||||||| Sbjct: 974 tcaacagccctgtaagctttaggatgccattttcct 939
>dbj|AK072266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006H21, full insert sequence Length = 1574 Score = 188 bits (95), Expect = 1e-44 Identities = 184/216 (85%) Strand = Plus / Minus Query: 211 gagaaaatgttcatcanagtgncgagcgcctcggggtanaatttccgtgcgaataggtag 270 |||||||||||||||| | || |||| |||||||| || ||||||||||| ||||||||| Sbjct: 1372 gagaaaatgttcatcagattgtcgagtgcctcgggatagaatttccgtgcaaataggtag 1313 Query: 271 caaggcctcttcatgccggtccacatgcacggtcttcnctgcattncatgctttgcgntg 330 ||||||||||||||||| |||| | ||||||||||| | || | |||||||| || Sbjct: 1312 caaggcctcttcatgccattccataggcacggtcttctcatcacttggtgctttgcattg 1253 Query: 331 ctggtcacgtgaatgctctcatcaatggacgctatacttttaagcaggtnaaagcttgtg 390 || || || ||||| |||||||||||||||| ||| | |||||||| | |||||||||| Sbjct: 1252 cttgtaacatgaatactctcatcaatggacgaaatattcttaagcagttcaaagcttgtg 1193 Query: 391 tcaacagccctataaactttaggatgccattttcct 426 ||||||||||| ||| |||||||||||||||||||| Sbjct: 1192 tcaacagccctgtaagctttaggatgccattttcct 1157
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 111 bits (56), Expect = 2e-21 Identities = 86/97 (88%) Strand = Plus / Plus Query: 211 gagaaaatgttcatcanagtgncgagcgcctcggggtanaatttccgtgcgaataggtag 270 |||||||||||||||| | || |||| |||||||| || ||||||||||| ||||||||| Sbjct: 28946861 gagaaaatgttcatcagattgtcgagtgcctcgggatagaatttccgtgcaaataggtag 28946920 Query: 271 caaggcctcttcatgccggtccacatgcacggtcttc 307 ||||||||||||||||| |||| | ||||||||||| Sbjct: 28946921 caaggcctcttcatgccattccataggcacggtcttc 28946957 Score = 83.8 bits (42), Expect = 4e-13 Identities = 53/57 (92%) Strand = Plus / Plus Query: 370 ttaagcaggtnaaagcttgtgtcaacagccctataaactttaggatgccattttcct 426 |||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct: 28947409 ttaagcagttcaaagcttgtgtcaacagccctgtaagctttaggatgccattttcct 28947465
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 111 bits (56), Expect = 2e-21 Identities = 86/97 (88%) Strand = Plus / Plus Query: 211 gagaaaatgttcatcanagtgncgagcgcctcggggtanaatttccgtgcgaataggtag 270 |||||||||||||||| | || |||| |||||||| || ||||||||||| ||||||||| Sbjct: 96905 gagaaaatgttcatcagattgtcgagtgcctcgggatagaatttccgtgcaaataggtag 96964 Query: 271 caaggcctcttcatgccggtccacatgcacggtcttc 307 ||||||||||||||||| |||| | ||||||||||| Sbjct: 96965 caaggcctcttcatgccattccataggcacggtcttc 97001 Score = 83.8 bits (42), Expect = 4e-13 Identities = 53/57 (92%) Strand = Plus / Plus Query: 370 ttaagcaggtnaaagcttgtgtcaacagccctataaactttaggatgccattttcct 426 |||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct: 97453 ttaagcagttcaaagcttgtgtcaacagccctgtaagctttaggatgccattttcct 97509
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acgtgaatgctctcatcaat 356 |||||||||||||||||||| Sbjct: 22922527 acgtgaatgctctcatcaat 22922508
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acgtgaatgctctcatcaat 356 |||||||||||||||||||| Sbjct: 115794 acgtgaatgctctcatcaat 115775 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,790,312 Number of Sequences: 3902068 Number of extensions: 1790312 Number of successful extensions: 29911 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29871 Number of HSP's gapped (non-prelim): 38 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
