ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT3_CARPA (Q96386) Metallothionein-like protein type 3 (MT-3) 61 2e-09
2MT3_MUSAC (Q40256) Metallothionein-like protein type 3 (MT-3) (M... 60 3e-09
3MT3_MALDO (O24059) Metallothionein-like protein type 3 (MT-3) 56 7e-08
4MT3_ACTCH (P43389) Metallothionein-like protein type 3 PKIWI503 55 9e-08
5MT3_PRUAV (O48951) Metallothionein-like protein 1 (MT-1) 49 6e-06
6MT3_PICGL (Q40854) Metallothionein-like protein EMB30 44 3e-04
7GLYA_BRUSU (Q8G1F1) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.0
8GLYA_BRUME (Q8YGG7) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.0
9GLYA_BRUAB (Q57DY5) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.0
10GLYA_BRUA2 (Q2YN95) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.0

>MT3_CARPA (Q96386) Metallothionein-like protein type 3 (MT-3)|
          Length = 65

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 29/47 (61%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
 Frame = -1

Query: 511 MADKCGNCDCADKTQCVKKGDSYGIVMVDTEKSHLEV---HETAEND 380
           M+D CGNCDCADKTQCVKKG SY   +++TEKS + V      AEND
Sbjct: 1   MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMTVVMDAPAAEND 47



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>MT3_MUSAC (Q40256) Metallothionein-like protein type 3 (MT-3) (MWMT3)|
          Length = 65

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 27/44 (61%), Positives = 35/44 (79%), Gaps = 4/44 (9%)
 Frame = -1

Query: 499 CGNCDCADKTQCVKKGDSYGIVMVDTEKSHLE----VHETAEND 380
           CGNCDC DK+QCVKKG+SYGI +V+TEKS+++      E AE+D
Sbjct: 4   CGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHD 47



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>MT3_MALDO (O24059) Metallothionein-like protein type 3 (MT-3)|
          Length = 66

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = -1

Query: 511 MADKCGNCDCADKTQCVKKGDSYGIVMVDTEKSHLE 404
           M+ KC NCDCAD TQCVKKG+SY +V+V+TE   ++
Sbjct: 1   MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMD 36



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>MT3_ACTCH (P43389) Metallothionein-like protein type 3 PKIWI503|
          Length = 63

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 24/36 (66%), Positives = 32/36 (88%)
 Frame = -1

Query: 511 MADKCGNCDCADKTQCVKKGDSYGIVMVDTEKSHLE 404
           M+DKCGNCDCAD +QCVKKG+S  I +V+T+KS++E
Sbjct: 1   MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIE 34



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>MT3_PRUAV (O48951) Metallothionein-like protein 1 (MT-1)|
          Length = 64

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 18/36 (50%), Positives = 27/36 (75%)
 Frame = -1

Query: 511 MADKCGNCDCADKTQCVKKGDSYGIVMVDTEKSHLE 404
           M+ KC NCDC+D +QC KKG S+ +V+V+TE   ++
Sbjct: 1   MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMD 36



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>MT3_PICGL (Q40854) Metallothionein-like protein EMB30|
          Length = 60

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 20/35 (57%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 511 MADKCGNCDCADKTQCVKKGDSY-GIVMVDTEKSH 410
           M+  CGNCDCADK+QC KKG    GIV    E  H
Sbjct: 1   MSSDCGNCDCADKSQCTKKGFQIDGIVETSYEMGH 35



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>GLYA_BRUSU (Q8G1F1) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 58  EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 207
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUME (Q8YGG7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 58  EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 207
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUAB (Q57DY5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 58  EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 207
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUA2 (Q2YN95) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 58  EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 207
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,502,351
Number of Sequences: 219361
Number of extensions: 967321
Number of successful extensions: 2518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2518
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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