ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15p01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EDN1_RAT (P22388) Endothelin-1 precursor (ET-1) (Preproendotheli... 30 3.6
2EDN1_FELCA (Q5NRQ1) Endothelin-1 precursor (ET-1) (Preproendothe... 30 3.6
3CSN12_ASHGO (Q75BU2) COP9 signalosome complex subunit 12 30 3.6
4PE2R4_RABIT (Q28691) Prostaglandin E2 receptor, EP4 subtype (Pro... 30 3.6
5EDN1_CANFA (P13206) Endothelin-1 precursor (ET-1) (Preproendothe... 30 6.1
6YGHB_SALTY (P0A1F4) Inner membrane protein yghB 30 6.1
7YGHB_SALTI (P0A1F5) Inner membrane protein yghB 30 6.1
8PYRD_AQUAE (O66461) Dihydroorotate dehydrogenase (EC 1.3.3.1) (D... 29 8.0

>EDN1_RAT (P22388) Endothelin-1 precursor (ET-1) (Preproendothelin-1) (PPET1)|
          Length = 202

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 270 SVSLRPRRKKMCVCVSICKYVLSEECCLFC 181
           S S RPRR K C C S+    + +EC  FC
Sbjct: 42  STSWRPRRSKRCSCSSL----MDKECVYFC 67



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>EDN1_FELCA (Q5NRQ1) Endothelin-1 precursor (ET-1) (Preproendothelin-1) (PPET1)|
          Length = 202

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 276 ATSVSLRPRRKKMCVCVSICKYVLSEECCLFC 181
           A S   RPRR K C C S+    L +EC  FC
Sbjct: 40  APSAPWRPRRSKRCSCSSL----LDKECVYFC 67



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>CSN12_ASHGO (Q75BU2) COP9 signalosome complex subunit 12|
          Length = 412

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +3

Query: 270 RWL*HALLCCIYQVYHLSSGQLIIIILVTVEARARRSQPQRHLL 401
           RWL  ALL C     H    QLI+  LV V   ARR  P+ H++
Sbjct: 227 RWLNTALLTCHRD--HTRHHQLILTYLVPVAFLARRWYPKHHVI 268



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>PE2R4_RABIT (Q28691) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4|
           receptor) (PGE receptor, subtype EP4)
          Length = 488

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 191 QHSSDS--TYLQIDTHTHIFFRRGLRLTEVALTCFALLYLPSIS 316
           QH SDS  T   + TH+  F  R L+  E++ T   LLYLP +S
Sbjct: 364 QHCSDSRRTSSAMSTHSRSFLSRELK--EISSTSQTLLYLPELS 405



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>EDN1_CANFA (P13206) Endothelin-1 precursor (ET-1) (Preproendothelin-1) (PPET1)|
          Length = 202

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 276 ATSVSLRPRRKKMCVCVSICKYVLSEECCLFC 181
           A S   RPRR K C C S+    + +EC  FC
Sbjct: 40  APSAPWRPRRSKRCSCSSL----MDKECVYFC 67



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>YGHB_SALTY (P0A1F4) Inner membrane protein yghB|
          Length = 219

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 493 FAAYFLEVGDLSATFPPGESLLL 561
           FA  FLE G L A+F PG+SLLL
Sbjct: 33  FATLFLENGLLPASFLPGDSLLL 55



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>YGHB_SALTI (P0A1F5) Inner membrane protein yghB|
          Length = 219

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 493 FAAYFLEVGDLSATFPPGESLLL 561
           FA  FLE G L A+F PG+SLLL
Sbjct: 33  FATLFLENGLLPASFLPGDSLLL 55



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>PYRD_AQUAE (O66461) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 306

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 522 VTDFQKVCCKSAALPFVSIQALRGP*AKKKHW-RLADIVSKSGDAAGVATALLLLR 358
           VT+F KVC ++ A   V I  L G   K   W R  D+ +K+G  +G A   + +R
Sbjct: 172 VTEFAKVCIENGADGLVLINTLMG--MKINIWKRKPDLATKTGGLSGPAILPIAVR 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,883,003
Number of Sequences: 219361
Number of extensions: 1737897
Number of successful extensions: 3878
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3871
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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