>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2|
          Length = 365

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 240 RRYAGNHRAGIDRRQDGPAFQPGRRQRLRYTQRSQH 133
           RRY  ++R G D R+D  A++PGR    RY  R ++
Sbjct: 193 RRYRDDYRRGGDYRRD--AYRPGRDDERRYAPRGEY 226

>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 118 SQSWIM---LASLRVPQTLSSARLKCWTILPPVNACTMVTSITSIKDATAISAXTVVVPR 288
           SQ WI    LA L+   T +     C  I  PV+    +TS+T+   A A     V++P+
Sbjct: 141 SQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAEAAIPSRVLIPK 200

Query: 289 M 291
           M
Sbjct: 201 M 201

>PECA1_RAT (Q3SWT0) Platelet endothelial cell adhesion molecule precursor|
           (PECAM-1) (CD31 antigen)
          Length = 678

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 45  HH*LFYKDSXAVCN---KLNTAQVVLLQSIMDHAGFFACT 155
           H  LFYKD   V N     +T   V+ QS + HAG + CT
Sbjct: 61  HQVLFYKDDALVYNVSSSEHTESFVIPQSRVFHAGKYKCT 100

>EF2_NEUCR (Q96X45) Elongation factor 2 (EF-2) (Colonial temperature-sensitive|
           3)
          Length = 844

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 246 FDRRYAGNHRAGIDRRQDGPAFQPGRRQRL 157
           F R +AG  R+G+  R  GP + PG+++ L
Sbjct: 398 FGRVFAGTVRSGLKVRIQGPNYTPGKKEDL 427

>CRLS1_HUMAN (Q9UJA2) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase)|
           (CLS) (Protein GCD10 homolog)
          Length = 301

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 154 PQTLSSARLKCWTILPPVNAC 216
           P T  S R  CW +LPPV  C
Sbjct: 21  PGTRPSKRRACWALLPPVPCC 41

>KCNK4_HUMAN (Q9NYG8) Potassium channel subfamily K member 4 (TWIK-related|
           arachidonic acid-stimulated potassium channel protein)
           (TRAAK) (Two pore K(+) channel KT4.1)
          Length = 393

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 228 GNHRAGIDRRQDGPAFQP 175
           G++ AG D RQD PA+QP
Sbjct: 216 GDYVAGADPRQDSPAYQP 233

>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
           heavy chain)
          Length = 3110

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 138 GFFACTSNVVVCPAEMLDHPASCQCLHDGYQHNVDQRCHG 257
           G   C  +   CP +   + + C+C H+    + DQ C G
Sbjct: 285 GMCICYGHARACPLDPATNKSRCECEHNTCGDSCDQCCPG 324

>PUNC_HUMAN (Q8IVU1) Putative neuronal cell adhesion molecule precursor|
          Length = 814

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
 Frame = +3

Query: 90  LNTAQVVLLQSIMDHAGFFACTSN--------------VVVCPAEMLDHPAS 203
           L T  +++    + H+G + C +N              VV  PAE + HP S
Sbjct: 287 LGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQHPQS 338

>CLK2_HUMAN (P49760) Dual specificity protein kinase CLK2 (EC 2.7.12.1)|
           (CDC-like kinase 2)
          Length = 499

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
 Frame = -2

Query: 339 RRSRAQSWLXRGFLDQHPRHNNSX----------RGYRRGIFDRRYAGNHRAGIDRRQDG 190
           +R R++SW       +  R  +S           R   R ++DRRY G++R     R  G
Sbjct: 28  KRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYDDRSSDRRVYDRRYCGSYRRNDYSRDRG 87

Query: 189 PAF 181
            A+
Sbjct: 88  DAY 90

>PUNC_MOUSE (Q8BQC3) Putative neuronal cell adhesion molecule precursor|
          Length = 813

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
 Frame = +3

Query: 90  LNTAQVVLLQSIMDHAGFFACTSN--------------VVVCPAEMLDHPAS 203
           L T  +++    + H+G + C +N              VV  PAE + HP S
Sbjct: 299 LGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQHPQS 350

>TIMD4_HUMAN (Q96H15) T-cell immunoglobulin and mucin domain-containing protein|
           4 precursor (TIMD-4) (T-cell membrane protein 4) (TIM-4)
          Length = 378

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 153 TSNVVVCPAEMLDHPASCQCLHDGYQHNVDQRCHG 257
           TS  VV   E+L H  +  CL+  + HN +  C G
Sbjct: 23  TSETVV--TEVLGHRVTLPCLYSSWSHNSNSMCWG 55

>CU129_HUMAN (Q96M42) Protein C21orf129|
          Length = 142

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 109 CCFSQSWIMLASLRVPQTLSSARLK 183
           CC+ Q+WI+  S  + Q L+S+ L+
Sbjct: 65  CCYPQAWILACSAALLQALASSDLQ 89

>KIFC1_HUMAN (Q9BW19) Kinesin-like protein KIFC1 (Kinesin-like protein 2)|
           (Kinesin-related protein HSET)
          Length = 673

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 216 AGIDRRQDGPAFQPGRRQRLRYTQ 145
           AG +R   G A  PG R+RLR TQ
Sbjct: 567 AGSERLDPGLALGPGERERLRETQ 590

>RDRP_TNVA (P22958) RNA-directed RNA polymerase (EC 2.7.7.48) [Contains: 23|
           kDa protein]
          Length = 723

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 282 HNNSXRGYRRGIFDRRYAGNHRAGIDRRQDGP-----AFQPGRRQRLRYTQRSQHDP*LT 118
           HNNS    RRG+ +R +   +  G +  QD P     AF+   + R  YT+ S     +T
Sbjct: 252 HNNSLSNLRRGLMERVF---YVEGPNGLQDAPKPVKGAFRTLDKFRDLYTKNSWRHTPVT 308

Query: 117 EATLLVQY 94
               L+ Y
Sbjct: 309 SEQFLMNY 316

>GLGX_MYCTU (P0A4Y4) Glycogen operon protein glgX homolog (EC 3.2.1.-)|
          Length = 721

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 12  IVNRPXILILNHH*LFYKDSXAVCNKLNTAQVVLLQSIMDHAGFFACTSNV 164
           I N     +++H   FYKD     N LN      LQ IMD   ++    +V
Sbjct: 306 IDNTAYYRLMDHDLRFYKDFTGTGNSLNARHPHTLQLIMDSLRYWVIEMHV 356

>GLGX_MYCBO (P0A4Y5) Glycogen operon protein glgX homolog (EC 3.2.1.-)|
          Length = 721

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 12  IVNRPXILILNHH*LFYKDSXAVCNKLNTAQVVLLQSIMDHAGFFACTSNV 164
           I N     +++H   FYKD     N LN      LQ IMD   ++    +V
Sbjct: 306 IDNTAYYRLMDHDLRFYKDFTGTGNSLNARHPHTLQLIMDSLRYWVIEMHV 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,245,200
Number of Sequences: 219361
Number of extensions: 870263
Number of successful extensions: 1980
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1977
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)